Wall clock time and date at job start Mon Mar 30 2020 05:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30256 * 125.61628 * 2 1 4 4 C 1.34483 * 108.69649 * 180.19060 * 3 2 1 5 5 C 1.50699 * 126.16570 * 179.82347 * 4 3 2 6 6 N 1.46902 * 109.47241 * 269.69060 * 5 4 3 7 7 C 1.48562 * 111.00054 * 69.87025 * 6 5 4 8 8 C 1.54379 * 104.59317 * 159.04003 * 7 6 5 9 9 C 1.54255 * 105.06343 * 336.14891 * 8 7 6 10 10 O 1.42902 * 110.32273 * 118.89181 * 9 8 7 11 11 C 1.50698 * 110.32818 * 241.10358 * 9 8 7 12 12 H 1.08000 * 119.99422 * 24.93001 * 11 9 8 13 13 C 1.37869 * 120.00141 * 204.93485 * 11 9 8 14 14 N 1.31514 * 120.00031 * 173.94639 * 13 11 9 15 15 Si 1.86795 * 120.00159 * 353.94846 * 13 11 9 16 16 H 1.48504 * 109.47447 * 87.09795 * 15 13 11 17 17 H 1.48504 * 109.47218 * 207.09610 * 15 13 11 18 18 H 1.48499 * 109.47378 * 327.10000 * 15 13 11 19 19 C 1.48557 * 111.00227 * 185.29005 * 6 5 4 20 20 C 1.34333 * 107.67003 * 359.55966 * 4 3 2 21 21 C 1.50695 * 126.44494 * 180.28076 * 20 4 3 22 22 O 1.33964 * 125.61859 * 179.70552 * 2 1 3 23 23 H 1.09000 * 109.46924 * 180.31796 * 1 2 3 24 24 H 1.09000 * 109.47382 * 300.31718 * 1 2 3 25 25 H 1.09000 * 109.47369 * 60.31753 * 1 2 3 26 26 H 1.08998 * 109.47105 * 149.69134 * 5 4 3 27 27 H 1.08998 * 109.46858 * 29.68698 * 5 4 3 28 28 H 1.09002 * 110.40830 * 40.26621 * 7 6 5 29 29 H 1.09000 * 110.41218 * 277.82281 * 7 6 5 30 30 H 1.09003 * 110.32032 * 95.04591 * 8 7 6 31 31 H 1.08998 * 110.32286 * 217.14580 * 8 7 6 32 32 H 0.96696 * 113.99853 * 56.19493 * 10 9 8 33 33 H 0.97005 * 120.00429 * 180.02562 * 14 13 11 34 34 H 1.09004 * 110.40776 * 82.18027 * 19 6 5 35 35 H 1.08999 * 110.40975 * 319.74584 * 19 6 5 36 36 H 1.09003 * 109.46579 * 90.00530 * 21 20 4 37 37 H 1.09000 * 109.47563 * 209.99757 * 21 20 4 38 38 H 1.08994 * 109.47187 * 330.00585 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5522 0.6675 -0.0042 5 6 4.7570 1.5726 -0.0095 6 7 5.1481 1.8594 -1.3962 7 6 4.1478 2.7333 -2.0616 8 6 4.9121 3.3709 -3.2417 9 6 6.3988 3.3131 -2.8344 10 8 7.1389 2.5240 -3.7680 11 6 6.9733 4.7038 -2.7516 12 1 6.3238 5.5460 -2.5635 13 6 8.3279 4.9011 -2.9160 14 7 8.8137 6.1223 -2.9628 15 14 9.4732 3.4337 -3.0725 16 1 9.5508 3.0158 -4.4953 17 1 10.8274 3.8093 -2.5924 18 1 8.9520 2.3095 -2.2541 19 6 6.4077 2.6455 -1.4424 20 6 3.5698 -0.6757 0.0029 21 6 4.7937 -1.5549 0.0076 22 8 2.2872 -1.0890 0.0056 23 1 -0.3633 -1.0277 0.0057 24 1 -0.3634 0.5187 0.8871 25 1 -0.3634 0.5089 -0.8928 26 1 5.5823 1.0821 0.5066 27 1 4.5131 2.5052 0.4994 28 1 3.7990 3.5038 -1.3739 29 1 3.3090 2.1410 -2.4274 30 1 4.7468 2.7973 -4.1537 31 1 4.5965 4.4045 -3.3829 32 1 7.0649 2.8258 -4.6837 33 1 9.7667 6.2611 -3.0788 34 1 7.2706 1.9871 -1.3421 35 1 6.4126 3.4022 -0.6579 36 1 5.0887 -1.7614 1.0364 37 1 4.5695 -2.4925 -0.5012 38 1 5.6080 -1.0468 -0.5089 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595559451.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:38 Heat of formation + Delta-G solvation = -50.048975 kcal Electronic energy + Delta-G solvation = -20769.065787 eV Core-core repulsion = 17612.077388 eV Total energy + Delta-G solvation = -3156.988399 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -44.31980 -40.32361 -37.33035 -35.70627 -34.44227 -34.33862 -31.94004 -30.93220 -29.89483 -28.25716 -26.11776 -25.10459 -22.80476 -22.44207 -21.50739 -20.98032 -19.51736 -17.95012 -17.56992 -17.23813 -17.01025 -15.98485 -15.83412 -15.64264 -15.32236 -14.81992 -14.71786 -14.39866 -14.23595 -13.89689 -13.79065 -13.50575 -13.34614 -13.25191 -13.03007 -12.94894 -12.72638 -12.41225 -12.23976 -12.03013 -11.98681 -11.74324 -11.45383 -11.14644 -10.65250 -10.30255 -9.59191 -9.39241 -8.33730 -6.47402 0.47056 1.50473 1.52475 1.58865 1.75187 1.75478 2.46869 2.95964 3.02625 3.27243 3.54613 3.72671 3.84217 3.95422 4.09625 4.26866 4.36435 4.40205 4.48690 4.58172 4.64774 4.65392 4.66603 4.78248 4.80733 4.92332 4.96799 5.03935 5.10592 5.15336 5.22009 5.37614 5.39032 5.42226 5.86043 6.01308 6.08275 6.60220 6.78522 7.02479 7.32888 8.79480 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.033898 B = 0.005047 C = 0.004702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.818106 B = 5546.876936 C = 5953.776178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 C 0.179 3.821 3 N -0.510 5.510 4 C -0.026 4.026 5 C 0.126 3.874 6 N -0.504 5.504 7 C 0.059 3.941 8 C -0.137 4.137 9 C 0.223 3.777 10 O -0.562 6.562 11 C -0.553 4.553 12 H 0.038 0.962 13 C 0.024 3.976 14 N -0.940 5.940 15 Si 1.009 2.991 16 H -0.282 1.282 17 H -0.337 1.337 18 H -0.258 1.258 19 C 0.051 3.949 20 C -0.034 4.034 21 C -0.065 4.065 22 O -0.210 6.210 23 H 0.109 0.891 24 H 0.108 0.892 25 H 0.104 0.896 26 H 0.105 0.895 27 H 0.040 0.960 28 H 0.031 0.969 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.060 0.940 32 H 0.379 0.621 33 H 0.267 0.733 34 H 0.078 0.922 35 H 0.044 0.956 36 H 0.102 0.898 37 H 0.091 0.909 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.442 -16.939 5.867 22.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.028 4.028 3 N -0.241 5.241 4 C -0.145 4.145 5 C -0.003 4.003 6 N -0.229 5.229 7 C -0.069 4.069 8 C -0.175 4.175 9 C 0.183 3.817 10 O -0.370 6.370 11 C -0.591 4.591 12 H 0.056 0.944 13 C -0.176 4.176 14 N -0.578 5.578 15 Si 0.843 3.157 16 H -0.208 1.208 17 H -0.269 1.269 18 H -0.183 1.183 19 C -0.076 4.076 20 C -0.087 4.087 21 C -0.122 4.122 22 O -0.099 6.099 23 H 0.127 0.873 24 H 0.126 0.874 25 H 0.123 0.877 26 H 0.124 0.876 27 H 0.058 0.942 28 H 0.050 0.950 29 H 0.090 0.910 30 H 0.097 0.903 31 H 0.078 0.922 32 H 0.228 0.772 33 H 0.075 0.925 34 H 0.096 0.904 35 H 0.062 0.938 36 H 0.120 0.880 37 H 0.109 0.891 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -13.376 -17.087 6.140 22.552 hybrid contribution 0.706 0.797 -0.141 1.074 sum -12.671 -16.290 5.999 21.492 Atomic orbital electron populations 1.20473 0.78123 1.06290 1.05936 1.27154 0.97883 0.78015 0.99783 1.70281 1.02329 1.31770 1.19692 1.21248 0.92524 0.92723 1.07957 1.20454 0.92756 0.96656 0.90421 1.65462 1.02901 1.40088 1.14421 1.22780 0.94676 0.94047 0.95419 1.22960 0.96048 1.00084 0.98427 1.19714 0.88198 0.87298 0.86488 1.86082 1.71854 1.58276 1.20832 1.21642 0.93543 0.92683 1.51184 0.94399 1.25919 1.00181 0.98785 0.92690 1.70098 1.14279 1.23307 1.50102 0.84712 0.73485 0.78536 0.79014 1.20843 1.26920 1.18302 1.23280 0.92319 0.95077 0.96953 1.23676 0.84457 0.95025 1.05577 1.20429 0.88774 0.98091 1.04883 1.84380 1.16794 1.38051 1.70646 0.87275 0.87370 0.87749 0.87642 0.94172 0.95045 0.91017 0.90329 0.92169 0.77192 0.92471 0.90351 0.93803 0.87977 0.89053 0.88827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.67 10.51 71.24 0.75 0.08 16 2 C 0.18 4.40 8.34 88.34 0.74 5.14 16 3 N -0.51 -15.87 11.29 -291.98 -3.30 -19.17 16 4 C -0.03 -0.79 6.10 41.26 0.25 -0.54 16 5 C 0.13 4.04 4.98 85.56 0.43 4.47 16 6 N -0.50 -18.60 5.36 -886.04 -4.75 -23.35 16 7 C 0.06 2.20 5.98 86.45 0.52 2.72 16 8 C -0.14 -5.48 6.40 31.49 0.20 -5.28 16 9 C 0.22 10.17 0.90 -10.65 -0.01 10.16 16 10 O -0.56 -24.35 8.38 -148.98 -1.25 -25.60 16 11 C -0.55 -30.74 8.58 25.60 0.22 -30.53 16 12 H 0.04 2.35 7.85 -2.91 -0.02 2.33 16 13 C 0.02 1.35 5.46 84.65 0.46 1.82 16 14 N -0.94 -58.15 13.96 21.44 0.30 -57.85 16 15 Si 1.01 48.88 24.86 68.60 1.71 50.59 16 16 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 17 H -0.34 -16.71 7.11 99.48 0.71 -16.00 16 18 H -0.26 -11.96 5.24 99.48 0.52 -11.44 16 19 C 0.05 2.17 5.29 86.45 0.46 2.63 16 20 C -0.03 -0.89 7.39 24.79 0.18 -0.71 16 21 C -0.07 -1.23 10.04 71.23 0.72 -0.51 16 22 O -0.21 -5.41 10.78 -3.72 -0.04 -5.45 16 23 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 24 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.10 1.19 8.14 -2.39 -0.02 1.18 16 26 H 0.11 2.92 7.78 -2.39 -0.02 2.91 16 27 H 0.04 1.38 7.88 -2.39 -0.02 1.36 16 28 H 0.03 1.23 7.82 -2.39 -0.02 1.21 16 29 H 0.07 2.59 8.12 -2.39 -0.02 2.57 16 30 H 0.08 2.84 7.98 -2.39 -0.02 2.82 16 31 H 0.06 2.52 7.57 -2.39 -0.02 2.50 16 32 H 0.38 14.40 8.99 -74.06 -0.67 13.74 16 33 H 0.27 15.56 8.31 -92.70 -0.77 14.79 16 34 H 0.08 3.34 6.48 -2.38 -0.02 3.32 16 35 H 0.04 1.95 7.71 -2.39 -0.02 1.93 16 36 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.09 1.92 7.79 -2.39 -0.02 1.90 16 Total: -1.00 -71.58 309.05 -2.21 -73.79 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: 0.21 Total: 17.59 kcal Atomic # 6 Polarization: -15.45 SS G_CDS: 4.91 Total: -10.54 kcal Atomic # 7 Polarization: -92.62 SS G_CDS: -7.75 Total: -100.37 kcal Atomic # 8 Polarization: -29.76 SS G_CDS: -1.29 Total: -31.05 kcal Atomic # 14 Polarization: 48.88 SS G_CDS: 1.71 Total: 50.59 kcal Total: -71.58 -2.21 -73.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595559451.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.739 kcal (2) G-P(sol) polarization free energy of solvation -71.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds