Wall clock time and date at job start Mon Mar 30 2020 04:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30173 * 126.80577 * 2 1 4 4 O 1.20915 * 111.60753 * 180.02562 * 3 2 1 5 5 C 1.34039 * 111.56880 * 359.76483 * 4 3 2 6 6 C 1.50697 * 126.78054 * 180.28737 * 5 4 3 7 7 C 1.35451 * 106.44315 * 0.37949 * 5 4 3 8 8 C 1.50699 * 128.00657 * 179.91188 * 7 5 4 9 9 C 1.53002 * 109.47389 * 269.67960 * 8 7 5 10 10 N 1.46500 * 109.47317 * 180.02562 * 9 8 7 11 11 C 1.34773 * 119.99996 * 179.97438 * 10 9 8 12 12 O 1.21277 * 120.00100 * 0.02562 * 11 10 9 13 13 C 1.50699 * 120.00068 * 179.97438 * 11 10 9 14 14 H 1.09002 * 109.46959 * 60.00140 * 13 11 10 15 15 C 1.53000 * 109.47083 * 299.99925 * 13 11 10 16 16 C 1.50703 * 109.47227 * 180.02562 * 13 11 10 17 17 H 1.08003 * 119.99742 * 0.02562 * 16 13 11 18 18 C 1.37873 * 119.99873 * 180.02562 * 16 13 11 19 19 N 1.31509 * 120.00433 * 359.97438 * 18 16 13 20 20 Si 1.86803 * 119.99975 * 179.97438 * 18 16 13 21 21 H 1.48507 * 109.47197 * 89.99842 * 20 18 16 22 22 H 1.48495 * 109.47693 * 210.00055 * 20 18 16 23 23 H 1.48508 * 109.46868 * 330.00146 * 20 18 16 24 24 H 1.09000 * 109.46794 * 269.97389 * 1 2 3 25 25 H 1.09001 * 109.47204 * 29.96842 * 1 2 3 26 26 H 1.08997 * 109.47715 * 149.97165 * 1 2 3 27 27 H 1.08997 * 109.47183 * 270.10956 * 6 5 4 28 28 H 1.08999 * 109.47394 * 30.11584 * 6 5 4 29 29 H 1.09002 * 109.47346 * 150.11102 * 6 5 4 30 30 H 1.09002 * 109.47485 * 149.67922 * 8 7 5 31 31 H 1.09001 * 109.47358 * 29.68421 * 8 7 5 32 32 H 1.09002 * 109.47097 * 60.00051 * 9 8 7 33 33 H 1.09004 * 109.47006 * 300.00069 * 9 8 7 34 34 H 0.96998 * 120.00098 * 359.97438 * 10 9 8 35 35 H 1.09004 * 109.46724 * 60.00424 * 15 13 11 36 36 H 1.09001 * 109.47194 * 179.97438 * 15 13 11 37 37 H 1.08992 * 109.47399 * 299.99938 * 15 13 11 38 38 H 0.97001 * 120.00323 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4537 0.7253 -0.0005 5 6 3.6024 -0.6068 0.0042 6 6 4.9021 -1.3696 0.0112 7 6 2.3539 -1.1320 -0.0007 8 6 1.9590 -2.5864 -0.0002 9 6 1.8241 -3.0787 -1.4426 10 7 1.4396 -4.4924 -1.4421 11 6 1.2614 -5.1426 -2.6091 12 8 1.4198 -4.5576 -3.6596 13 6 0.8664 -6.5969 -2.6086 14 1 -0.0870 -6.7143 -2.0935 15 6 1.9393 -7.4166 -1.8889 16 6 0.7335 -7.0818 -4.0293 17 1 0.9171 -6.4046 -4.8504 18 6 0.3775 -8.3898 -4.2808 19 7 0.1544 -9.2145 -3.2810 20 14 0.2119 -8.9907 -6.0418 21 1 1.5191 -9.5173 -6.5101 22 1 -0.8069 -10.0693 -6.1032 23 1 -0.2079 -7.8630 -6.9122 24 1 -0.3633 -0.0005 1.0277 25 1 -0.3634 0.8903 -0.5133 26 1 -0.3634 -0.8897 -0.5142 27 1 5.2201 -1.5551 -1.0147 28 1 5.6636 -0.7853 0.5277 29 1 4.7626 -2.3203 0.5258 30 1 1.0053 -2.7038 0.5144 31 1 2.7230 -3.1702 0.5131 32 1 2.7778 -2.9614 -1.9572 33 1 1.0600 -2.4949 -1.9558 34 1 1.3133 -4.9604 -0.6020 35 1 2.0359 -7.0660 -0.8613 36 1 1.6535 -8.4684 -1.8882 37 1 2.8927 -7.2992 -2.4040 38 1 -0.0964 -10.1347 -3.4580 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597169135.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:16 Heat of formation + Delta-G solvation = -0.161147 kcal Electronic energy + Delta-G solvation = -19847.802866 eV Core-core repulsion = 16692.977766 eV Total energy + Delta-G solvation = -3154.825100 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -45.05012 -38.84770 -36.30766 -34.26434 -33.72719 -33.53311 -30.88750 -29.69803 -28.79636 -27.49536 -25.13743 -24.20172 -22.13188 -21.37150 -20.28660 -19.31544 -17.80279 -17.01704 -16.33910 -15.94844 -15.30671 -15.25278 -14.39490 -14.35091 -13.93735 -13.64410 -13.37026 -13.30528 -13.03082 -12.86655 -12.72059 -12.43873 -12.36367 -12.06782 -11.65176 -11.38904 -11.02166 -10.97005 -10.71724 -10.66394 -10.26028 -9.98626 -9.93447 -9.28159 -8.97377 -8.61743 -8.46581 -8.32239 -6.03171 -4.06133 1.31162 2.04087 2.95504 3.33917 3.39657 3.46699 3.73853 3.84888 4.09162 4.28590 4.47789 4.61045 4.88110 5.01759 5.07637 5.18230 5.21456 5.30189 5.31352 5.38843 5.47344 5.51678 5.59237 5.78844 5.91604 6.03665 6.05578 6.31836 6.60988 6.81868 6.92110 7.05831 7.47308 7.75506 7.98989 8.14725 8.14946 8.44857 9.03145 9.24266 9.59629 11.04461 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.035504 B = 0.003567 C = 0.003493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.460998 B = 7846.768310 C = 8014.998144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.026 3.974 3 N -0.370 5.370 4 O 0.094 5.906 5 C -0.027 4.027 6 C -0.075 4.075 7 C -0.195 4.195 8 C -0.052 4.052 9 C 0.126 3.874 10 N -0.748 5.748 11 C 0.519 3.481 12 O -0.546 6.546 13 C 0.028 3.972 14 H 0.052 0.948 15 C -0.131 4.131 16 C -0.500 4.500 17 H 0.074 0.926 18 C 0.058 3.942 19 N -0.897 5.897 20 Si 0.899 3.101 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.273 1.273 24 H 0.080 0.920 25 H 0.076 0.924 26 H 0.085 0.915 27 H 0.090 0.910 28 H 0.082 0.918 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.396 0.604 35 H 0.012 0.988 36 H 0.093 0.907 37 H 0.031 0.969 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.368 13.275 11.684 18.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.133 4.133 3 N -0.076 5.076 4 O 0.030 5.970 5 C -0.091 4.091 6 C -0.133 4.133 7 C -0.199 4.199 8 C -0.090 4.090 9 C 0.002 3.998 10 N -0.403 5.403 11 C 0.309 3.691 12 O -0.422 6.422 13 C 0.007 3.993 14 H 0.070 0.930 15 C -0.190 4.190 16 C -0.539 4.539 17 H 0.092 0.908 18 C -0.142 4.142 19 N -0.537 5.537 20 Si 0.727 3.273 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.197 1.197 24 H 0.098 0.902 25 H 0.095 0.905 26 H 0.103 0.897 27 H 0.109 0.891 28 H 0.101 0.899 29 H 0.111 0.889 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.230 0.770 35 H 0.031 0.969 36 H 0.111 0.889 37 H 0.050 0.950 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.217 14.844 10.912 19.148 hybrid contribution -0.236 -1.294 -0.442 1.388 sum 4.982 13.550 10.470 17.833 Atomic orbital electron populations 1.20199 0.85916 1.04124 1.03324 1.23476 0.98979 0.88446 1.02377 1.73824 0.89298 1.23976 1.20524 1.84785 1.21650 1.22542 1.68013 1.24284 0.98303 0.83772 1.02711 1.20373 0.89893 0.98551 1.04442 1.20776 0.91645 0.97185 1.10287 1.20082 1.02845 0.88452 0.97597 1.21090 1.00680 0.83292 0.94744 1.46284 1.73686 1.10555 1.09778 1.21981 0.74314 0.90853 0.81989 1.90536 1.50398 1.69469 1.31757 1.18880 0.96392 0.84820 0.99167 0.92984 1.21737 0.97810 1.04567 0.94840 1.21153 1.45740 0.95797 0.91200 0.90818 1.24943 0.95201 0.96645 0.97447 1.69865 1.47903 1.05501 1.30421 0.86463 0.77754 0.78324 0.84740 1.20673 1.21299 1.19747 0.90171 0.90519 0.89668 0.89118 0.89901 0.88885 0.89823 0.89879 0.92144 0.92161 0.77036 0.96924 0.88877 0.95030 0.92981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.74 10.39 36.00 0.37 -0.36 16 2 C 0.03 0.32 7.33 -82.10 -0.60 -0.28 16 3 N -0.37 -4.99 12.07 33.42 0.40 -4.59 16 4 O 0.09 1.17 11.20 17.18 0.19 1.36 16 5 C -0.03 -0.29 7.49 -35.30 -0.26 -0.55 16 6 C -0.08 -0.52 10.30 36.00 0.37 -0.15 16 7 C -0.19 -2.18 5.58 -104.42 -0.58 -2.76 16 8 C -0.05 -0.52 5.66 -27.88 -0.16 -0.68 16 9 C 0.13 1.78 5.66 -4.04 -0.02 1.76 16 10 N -0.75 -12.26 5.45 -60.29 -0.33 -12.59 16 11 C 0.52 11.61 7.15 -10.99 -0.08 11.53 16 12 O -0.55 -14.24 15.46 5.56 0.09 -14.16 16 13 C 0.03 0.70 2.64 -92.92 -0.25 0.45 16 14 H 0.05 1.31 8.14 -51.93 -0.42 0.89 16 15 C -0.13 -2.94 8.86 37.16 0.33 -2.61 16 16 C -0.50 -14.14 8.37 -34.44 -0.29 -14.43 16 17 H 0.07 2.21 6.75 -52.48 -0.35 1.86 16 18 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 19 N -0.90 -24.97 11.32 55.43 0.63 -24.35 16 20 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 24 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 25 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.09 0.54 7.44 -51.93 -0.39 0.16 16 30 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.08 0.71 7.44 -51.93 -0.39 0.32 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.40 5.40 7.89 -40.82 -0.32 5.08 16 35 H 0.01 0.22 7.56 -51.93 -0.39 -0.17 16 36 H 0.09 2.31 6.07 -51.93 -0.32 1.99 16 37 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.26 6.92 8.31 -40.82 -0.34 6.59 16 LS Contribution 323.96 15.07 4.88 4.88 Total: -1.00 -32.96 323.96 -5.94 -38.90 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -5.52 Total: 0.40 kcal Atomic # 6 Polarization: -5.32 SS G_CDS: -1.26 Total: -6.58 kcal Atomic # 7 Polarization: -42.23 SS G_CDS: 0.70 Total: -41.53 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: 0.28 Total: -12.79 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.96 -5.94 -38.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597169135.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.737 kcal (2) G-P(sol) polarization free energy of solvation -32.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds