Wall clock time and date at job start Mon Mar 30 2020 04:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30173 * 126.80577 * 2 1 4 4 O 1.20915 * 111.60753 * 180.02562 * 3 2 1 5 5 C 1.34039 * 111.56880 * 359.76483 * 4 3 2 6 6 C 1.50697 * 126.78054 * 180.28737 * 5 4 3 7 7 C 1.35451 * 106.44315 * 0.37949 * 5 4 3 8 8 C 1.50699 * 128.00657 * 179.91188 * 7 5 4 9 9 C 1.53002 * 109.47389 * 269.67960 * 8 7 5 10 10 N 1.46500 * 109.47317 * 180.02562 * 9 8 7 11 11 C 1.34773 * 119.99996 * 179.97438 * 10 9 8 12 12 O 1.21277 * 120.00100 * 0.02562 * 11 10 9 13 13 C 1.50699 * 120.00068 * 179.97438 * 11 10 9 14 14 H 1.09002 * 109.46959 * 60.00140 * 13 11 10 15 15 C 1.53000 * 109.47083 * 299.99925 * 13 11 10 16 16 C 1.50703 * 109.47227 * 180.02562 * 13 11 10 17 17 H 1.08003 * 119.99742 * 0.02562 * 16 13 11 18 18 C 1.37873 * 119.99873 * 180.02562 * 16 13 11 19 19 N 1.31509 * 120.00433 * 359.97438 * 18 16 13 20 20 Si 1.86803 * 119.99975 * 179.97438 * 18 16 13 21 21 H 1.48507 * 109.47197 * 89.99842 * 20 18 16 22 22 H 1.48495 * 109.47693 * 210.00055 * 20 18 16 23 23 H 1.48508 * 109.46868 * 330.00146 * 20 18 16 24 24 H 1.09000 * 109.46794 * 269.97389 * 1 2 3 25 25 H 1.09001 * 109.47204 * 29.96842 * 1 2 3 26 26 H 1.08997 * 109.47715 * 149.97165 * 1 2 3 27 27 H 1.08997 * 109.47183 * 270.10956 * 6 5 4 28 28 H 1.08999 * 109.47394 * 30.11584 * 6 5 4 29 29 H 1.09002 * 109.47346 * 150.11102 * 6 5 4 30 30 H 1.09002 * 109.47485 * 149.67922 * 8 7 5 31 31 H 1.09001 * 109.47358 * 29.68421 * 8 7 5 32 32 H 1.09002 * 109.47097 * 60.00051 * 9 8 7 33 33 H 1.09004 * 109.47006 * 300.00069 * 9 8 7 34 34 H 0.96998 * 120.00098 * 359.97438 * 10 9 8 35 35 H 1.09004 * 109.46724 * 60.00424 * 15 13 11 36 36 H 1.09001 * 109.47194 * 179.97438 * 15 13 11 37 37 H 1.08992 * 109.47399 * 299.99938 * 15 13 11 38 38 H 0.97001 * 120.00323 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4537 0.7253 -0.0005 5 6 3.6024 -0.6068 0.0042 6 6 4.9021 -1.3696 0.0112 7 6 2.3539 -1.1320 -0.0007 8 6 1.9590 -2.5864 -0.0002 9 6 1.8241 -3.0787 -1.4426 10 7 1.4396 -4.4924 -1.4421 11 6 1.2614 -5.1426 -2.6091 12 8 1.4198 -4.5576 -3.6596 13 6 0.8664 -6.5969 -2.6086 14 1 -0.0870 -6.7143 -2.0935 15 6 1.9393 -7.4166 -1.8889 16 6 0.7335 -7.0818 -4.0293 17 1 0.9171 -6.4046 -4.8504 18 6 0.3775 -8.3898 -4.2808 19 7 0.1544 -9.2145 -3.2810 20 14 0.2119 -8.9907 -6.0418 21 1 1.5191 -9.5173 -6.5101 22 1 -0.8069 -10.0693 -6.1032 23 1 -0.2079 -7.8630 -6.9122 24 1 -0.3633 -0.0005 1.0277 25 1 -0.3634 0.8903 -0.5133 26 1 -0.3634 -0.8897 -0.5142 27 1 5.2201 -1.5551 -1.0147 28 1 5.6636 -0.7853 0.5277 29 1 4.7626 -2.3203 0.5258 30 1 1.0053 -2.7038 0.5144 31 1 2.7230 -3.1702 0.5131 32 1 2.7778 -2.9614 -1.9572 33 1 1.0600 -2.4949 -1.9558 34 1 1.3133 -4.9604 -0.6020 35 1 2.0359 -7.0660 -0.8613 36 1 1.6535 -8.4684 -1.8882 37 1 2.8927 -7.2992 -2.4040 38 1 -0.0964 -10.1347 -3.4580 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597169135.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:15 Heat of formation + Delta-G solvation = -21.834155 kcal Electronic energy + Delta-G solvation = -19848.742678 eV Core-core repulsion = 16692.977766 eV Total energy + Delta-G solvation = -3155.764912 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -45.93093 -40.53791 -37.36324 -35.74577 -35.41285 -34.49253 -32.64691 -30.91221 -29.60997 -28.29519 -27.16308 -25.47589 -23.74324 -22.34654 -21.23306 -20.85625 -18.72051 -18.32661 -17.96843 -17.62085 -16.83369 -16.45158 -16.22983 -15.43771 -15.09502 -14.77687 -14.45432 -14.31538 -14.13090 -13.92854 -13.83297 -13.46796 -13.43598 -13.16740 -12.98688 -12.94683 -12.67085 -12.54941 -12.47131 -12.15399 -12.00233 -11.81270 -11.00923 -10.83568 -10.59164 -10.31705 -10.07019 -9.94962 -8.13279 -6.23103 0.47769 1.16451 1.41529 1.42615 1.54154 1.96938 2.17109 2.39428 2.57981 3.16461 3.24055 3.52105 3.81463 4.03628 4.08118 4.30801 4.39836 4.42220 4.51887 4.63456 4.69828 4.71839 4.80480 4.82101 4.90122 4.98207 5.01223 5.07563 5.10037 5.16177 5.32581 5.54440 5.61373 5.78619 5.98659 6.25876 6.78198 6.90190 7.29327 7.42696 7.58986 8.92275 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.035504 B = 0.003567 C = 0.003493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.460998 B = 7846.768310 C = 8014.998144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.017 3.983 3 N -0.401 5.401 4 O 0.080 5.920 5 C -0.021 4.021 6 C -0.077 4.077 7 C -0.211 4.211 8 C -0.036 4.036 9 C 0.129 3.871 10 N -0.722 5.722 11 C 0.521 3.479 12 O -0.591 6.591 13 C 0.022 3.978 14 H 0.044 0.956 15 C -0.119 4.119 16 C -0.530 4.530 17 H 0.046 0.954 18 C 0.021 3.979 19 N -0.910 5.910 20 Si 0.952 3.048 21 H -0.274 1.274 22 H -0.275 1.275 23 H -0.280 1.280 24 H 0.098 0.902 25 H 0.075 0.925 26 H 0.088 0.912 27 H 0.094 0.906 28 H 0.100 0.900 29 H 0.110 0.890 30 H 0.100 0.900 31 H 0.108 0.892 32 H 0.051 0.949 33 H 0.044 0.956 34 H 0.414 0.586 35 H 0.057 0.943 36 H 0.069 0.931 37 H 0.022 0.978 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.905 12.871 13.145 19.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.142 4.142 3 N -0.110 5.110 4 O 0.019 5.981 5 C -0.084 4.084 6 C -0.134 4.134 7 C -0.216 4.216 8 C -0.074 4.074 9 C 0.005 3.995 10 N -0.376 5.376 11 C 0.310 3.690 12 O -0.471 6.471 13 C 0.001 3.999 14 H 0.061 0.939 15 C -0.177 4.177 16 C -0.568 4.568 17 H 0.064 0.936 18 C -0.178 4.178 19 N -0.549 5.549 20 Si 0.778 3.222 21 H -0.200 1.200 22 H -0.200 1.200 23 H -0.206 1.206 24 H 0.116 0.884 25 H 0.094 0.906 26 H 0.107 0.893 27 H 0.112 0.888 28 H 0.119 0.881 29 H 0.128 0.872 30 H 0.118 0.882 31 H 0.127 0.873 32 H 0.070 0.930 33 H 0.062 0.938 34 H 0.250 0.750 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.041 0.959 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.772 14.438 12.441 19.913 hybrid contribution -0.392 -1.132 -0.861 1.475 sum 5.380 13.306 11.580 18.441 Atomic orbital electron populations 1.20297 0.84522 1.04257 1.04519 1.23979 1.00143 0.88616 1.01466 1.73818 0.89861 1.25050 1.22319 1.84749 1.21399 1.23636 1.68339 1.24966 0.99618 0.83182 1.00644 1.20594 0.88621 0.99059 1.05123 1.20913 0.91797 0.97391 1.11460 1.19984 1.04701 0.87917 0.94802 1.21173 0.99534 0.81254 0.97533 1.45921 1.71481 1.11497 1.08697 1.21551 0.74345 0.90256 0.82888 1.90516 1.52772 1.70085 1.33753 1.18829 0.96773 0.86860 0.97411 0.93858 1.21551 0.96299 1.02749 0.97082 1.21304 1.46912 0.96028 0.92563 0.93585 1.25547 0.94796 0.96626 1.00829 1.69935 1.47656 1.05699 1.31632 0.85651 0.78151 0.77724 0.80684 1.19978 1.19973 1.20563 0.88376 0.90603 0.89293 0.88789 0.88100 0.87163 0.88187 0.87330 0.93020 0.93754 0.74950 0.92417 0.91266 0.95890 0.92617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.39 10.39 71.23 0.74 -0.65 16 2 C 0.02 0.39 7.33 43.58 0.32 0.71 16 3 N -0.40 -10.69 12.07 -49.57 -0.60 -11.29 16 4 O 0.08 1.94 11.20 71.65 0.80 2.74 16 5 C -0.02 -0.40 7.49 25.04 0.19 -0.21 16 6 C -0.08 -0.86 10.30 71.23 0.73 -0.13 16 7 C -0.21 -4.31 5.58 -19.74 -0.11 -4.42 16 8 C -0.04 -0.62 5.66 29.85 0.17 -0.45 16 9 C 0.13 3.40 5.66 86.38 0.49 3.89 16 10 N -0.72 -22.17 5.45 -463.06 -2.52 -24.69 16 11 C 0.52 23.07 7.15 87.66 0.63 23.70 16 12 O -0.59 -31.38 15.46 -3.02 -0.05 -31.42 16 13 C 0.02 1.10 2.64 -12.29 -0.03 1.06 16 14 H 0.04 2.18 8.14 -2.39 -0.02 2.16 16 15 C -0.12 -5.14 8.86 71.98 0.64 -4.51 16 16 C -0.53 -30.41 8.37 25.60 0.21 -30.20 16 17 H 0.05 2.85 6.75 -2.91 -0.02 2.83 16 18 C 0.02 1.17 5.30 84.65 0.45 1.62 16 19 N -0.91 -50.28 11.32 21.44 0.24 -50.03 16 20 Si 0.95 44.62 29.54 68.60 2.03 46.65 16 21 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 22 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 23 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 24 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.11 0.87 7.44 -2.39 -0.02 0.86 16 30 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.11 1.36 7.44 -2.39 -0.02 1.34 16 32 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.04 1.34 8.14 -2.38 -0.02 1.32 16 34 H 0.41 9.85 7.89 -92.71 -0.73 9.12 16 35 H 0.06 1.92 7.56 -2.39 -0.02 1.90 16 36 H 0.07 3.36 6.07 -2.39 -0.01 3.35 16 37 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.26 13.85 8.31 -92.71 -0.77 13.08 16 Total: -1.00 -72.61 323.96 4.66 -67.94 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: 0.34 Total: 9.69 kcal Atomic # 6 Polarization: -14.01 SS G_CDS: 4.42 Total: -9.59 kcal Atomic # 7 Polarization: -83.13 SS G_CDS: -2.88 Total: -86.01 kcal Atomic # 8 Polarization: -29.44 SS G_CDS: 0.76 Total: -28.68 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -72.61 4.66 -67.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597169135.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.108 kcal (2) G-P(sol) polarization free energy of solvation -72.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds