Wall clock time and date at job start Mon Mar 30 2020 04:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86798 * 119.99680 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99880 * 3 2 1 5 5 H 1.48503 * 109.47261 * 150.00060 * 3 2 1 6 6 H 1.48500 * 109.47454 * 30.00053 * 3 2 1 7 7 C 1.38942 * 120.00191 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00129 * 359.97438 * 7 2 1 9 9 N 1.37097 * 119.99991 * 179.97438 * 7 2 1 10 10 C 1.34779 * 120.00203 * 179.97438 * 9 7 2 11 11 O 1.21298 * 120.00061 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00366 * 180.02562 * 10 9 7 13 13 N 1.46503 * 109.47189 * 180.02562 * 12 10 9 14 14 C 1.34781 * 119.99672 * 180.02562 * 13 12 10 15 15 O 1.21272 * 120.00143 * 359.97438 * 14 13 12 16 16 C 1.50700 * 119.99569 * 179.97438 * 14 13 12 17 17 H 1.09003 * 109.26058 * 60.00107 * 16 14 13 18 18 C 1.52868 * 109.27214 * 300.49630 * 16 14 13 19 19 C 1.53293 * 108.59410 * 184.84592 * 18 16 14 20 20 C 1.52878 * 108.58474 * 74.43846 * 19 18 16 21 21 C 1.52710 * 110.15359 * 305.48493 * 20 19 18 22 22 H 1.09002 * 115.38884 * 231.20975 * 21 20 19 23 23 C 1.53652 * 116.03164 * 90.19526 * 21 20 19 24 24 C 1.52021 * 120.51157 * 21.49088 * 21 20 19 25 25 H 1.08998 * 115.89215 * 209.95505 * 24 21 20 26 26 H 0.96996 * 120.00390 * 359.97438 * 1 2 3 27 27 H 0.96998 * 120.00598 * 0.02562 * 9 7 2 28 28 H 1.09004 * 109.46928 * 300.00314 * 12 10 9 29 29 H 1.09002 * 109.47231 * 60.00083 * 12 10 9 30 30 H 0.96997 * 119.99891 * 359.97438 * 13 12 10 31 31 H 1.09007 * 109.61691 * 304.58003 * 18 16 14 32 32 H 1.09000 * 109.61640 * 65.10827 * 18 16 14 33 33 H 1.09002 * 109.62300 * 194.16969 * 19 18 16 34 34 H 1.08999 * 109.61902 * 314.71289 * 19 18 16 35 35 H 1.09004 * 109.35498 * 65.68898 * 20 19 18 36 36 H 1.08992 * 109.35937 * 185.26760 * 20 19 18 37 37 H 1.08996 * 117.54143 * 355.69245 * 23 21 20 38 38 H 1.09003 * 117.53222 * 140.93784 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 3.5456 1.4403 0.7000 6 1 1.4454 2.6527 0.7000 7 6 2.0088 -1.2033 -0.0005 8 1 1.4689 -2.1386 -0.0005 9 7 3.3798 -1.2032 -0.0011 10 6 4.0538 -2.3704 -0.0011 11 8 3.4474 -3.4209 -0.0011 12 6 5.5608 -2.3704 -0.0011 13 7 6.0491 -3.7516 -0.0017 14 6 7.3743 -3.9978 -0.0013 15 8 8.1623 -3.0760 -0.0009 16 6 7.8766 -5.4186 -0.0013 17 1 7.5117 -5.9290 -0.8927 18 6 7.3539 -6.1386 1.2418 19 6 7.9708 -7.5411 1.2899 20 6 9.4337 -7.4156 1.7156 21 6 10.1686 -6.4451 0.7936 22 1 11.0987 -6.8201 0.3662 23 6 10.1640 -4.9705 1.2251 24 6 9.3973 -5.4132 -0.0134 25 1 9.8432 -5.1226 -0.9646 26 1 -0.4850 0.8400 0.0004 27 1 3.8649 -0.3632 -0.0007 28 1 5.9241 -1.8565 -0.8911 29 1 5.9241 -1.8565 0.8889 30 1 5.4188 -4.4889 -0.0016 31 1 7.6400 -5.5821 2.1344 32 1 6.2681 -6.2179 1.1893 33 1 7.4309 -8.1539 2.0118 34 1 7.9151 -7.9995 0.3025 35 1 9.4814 -7.0467 2.7402 36 1 9.9104 -8.3944 1.6638 37 1 9.5836 -4.7058 2.1089 38 1 11.0793 -4.3983 1.0738 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597650838.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:43 Heat of formation + Delta-G solvation = -61.864243 kcal Electronic energy + Delta-G solvation = -19985.409644 eV Core-core repulsion = 16827.908897 eV Total energy + Delta-G solvation = -3157.500747 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.55497 -38.87194 -37.93326 -34.56451 -33.87127 -33.11148 -31.83144 -31.38327 -27.82698 -25.38579 -24.25172 -22.72508 -21.73945 -20.17392 -19.66305 -18.85348 -18.35541 -17.09420 -16.53060 -15.72043 -15.36312 -15.31556 -14.82199 -14.46319 -14.09013 -13.93017 -13.51797 -13.48015 -13.18916 -12.85160 -12.47220 -12.35847 -12.17910 -11.99355 -11.51862 -11.29306 -11.24912 -11.01409 -10.65613 -10.52399 -10.22517 -10.07775 -9.86095 -9.71214 -9.47225 -8.85555 -8.78366 -8.31903 -6.42168 -3.94809 2.79682 2.98479 3.03123 3.10915 3.20100 3.55011 3.77965 4.02323 4.37160 4.51749 4.57351 4.61739 4.79578 4.94988 5.01969 5.05635 5.12762 5.26178 5.32202 5.44225 5.47651 5.68474 5.72413 5.78139 5.78471 5.80524 5.85996 5.94128 5.98098 6.08796 6.13517 6.17871 6.59411 7.42813 7.76882 7.99082 8.38743 8.46561 8.80263 9.28447 9.62065 10.70033 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.041649 B = 0.003683 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.124264 B = 7601.620887 C = 8073.472532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.045 3.955 3 Si 0.879 3.121 4 H -0.269 1.269 5 H -0.267 1.267 6 H -0.275 1.275 7 C -0.311 4.311 8 H 0.122 0.878 9 N -0.576 5.576 10 C 0.438 3.562 11 O -0.579 6.579 12 C 0.106 3.894 13 N -0.709 5.709 14 C 0.515 3.485 15 O -0.543 6.543 16 C -0.072 4.072 17 H 0.101 0.899 18 C -0.117 4.117 19 C -0.117 4.117 20 C -0.090 4.090 21 C -0.151 4.151 22 H 0.101 0.899 23 C -0.165 4.165 24 C -0.116 4.116 25 H 0.101 0.899 26 H 0.276 0.724 27 H 0.374 0.626 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.411 0.589 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.092 0.908 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.278 -10.635 1.796 21.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.159 4.159 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.192 1.192 6 H -0.200 1.200 7 C -0.439 4.439 8 H 0.139 0.861 9 N -0.214 5.214 10 C 0.224 3.776 11 O -0.463 6.463 12 C -0.022 4.022 13 N -0.364 5.364 14 C 0.301 3.699 15 O -0.420 6.420 16 C -0.093 4.093 17 H 0.119 0.881 18 C -0.154 4.154 19 C -0.154 4.154 20 C -0.127 4.127 21 C -0.170 4.170 22 H 0.119 0.881 23 C -0.202 4.202 24 C -0.134 4.134 25 H 0.119 0.881 26 H 0.086 0.914 27 H 0.207 0.793 28 H 0.102 0.898 29 H 0.101 0.899 30 H 0.249 0.751 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.110 0.890 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 18.190 -10.523 1.798 21.091 hybrid contribution 0.213 1.251 -0.073 1.271 sum 18.402 -9.271 1.725 20.678 Atomic orbital electron populations 1.69613 1.05715 1.27832 1.48163 1.25061 0.95529 0.98166 0.97121 0.86673 0.79909 0.83772 0.79149 1.19382 1.19245 1.19960 1.19443 0.78973 0.96804 1.48683 0.86077 1.42130 1.07701 1.06152 1.65417 1.19662 0.88098 0.84874 0.84985 1.90537 1.69234 1.30894 1.55676 1.20958 0.93676 0.84327 1.03204 1.45745 1.07144 1.08959 1.74501 1.20557 0.81914 0.91311 0.76120 1.90671 1.55411 1.46204 1.49758 1.20604 0.94631 0.93154 1.00957 0.88074 1.21644 1.00778 0.96096 0.96915 1.21566 0.95447 0.96337 1.02080 1.21058 0.95080 0.98362 0.98229 1.22300 1.00894 0.91245 1.02512 0.88076 1.22979 1.02095 0.96251 0.98828 1.21324 0.92065 1.02885 0.97157 0.88110 0.91369 0.79253 0.89832 0.89860 0.75062 0.91208 0.90575 0.91368 0.91332 0.91661 0.91611 0.88986 0.89063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.93 13.96 55.50 0.77 -24.16 16 2 C 0.05 1.22 5.50 -17.47 -0.10 1.12 16 3 Si 0.88 18.99 27.74 -169.99 -4.71 14.28 16 4 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 5 H -0.27 -5.30 6.52 56.52 0.37 -4.93 16 6 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 7 C -0.31 -8.55 10.16 -14.94 -0.15 -8.70 16 8 H 0.12 3.79 7.39 -52.48 -0.39 3.40 16 9 N -0.58 -13.39 5.09 -10.96 -0.06 -13.45 16 10 C 0.44 9.60 7.85 -10.99 -0.09 9.51 16 11 O -0.58 -14.52 15.24 5.54 0.08 -14.44 16 12 C 0.11 1.84 6.15 -5.19 -0.03 1.81 16 13 N -0.71 -11.16 5.42 -61.47 -0.33 -11.50 16 14 C 0.52 7.67 7.11 -10.98 -0.08 7.60 16 15 O -0.54 -9.66 15.66 5.56 0.09 -9.57 16 16 C -0.07 -0.81 2.58 -92.31 -0.24 -1.05 16 17 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 18 C -0.12 -1.17 4.82 -26.65 -0.13 -1.30 16 19 C -0.12 -0.95 5.93 -26.64 -0.16 -1.11 16 20 C -0.09 -0.71 5.83 -26.94 -0.16 -0.87 16 21 C -0.15 -1.36 6.19 -90.93 -0.56 -1.92 16 22 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 23 C -0.16 -1.78 9.17 -26.78 -0.25 -2.02 16 24 C -0.12 -1.26 4.68 -91.98 -0.43 -1.69 16 25 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 26 H 0.28 7.24 8.31 -40.82 -0.34 6.91 16 27 H 0.37 7.69 5.76 -40.82 -0.24 7.46 16 28 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 29 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 30 H 0.41 6.38 6.91 -40.82 -0.28 6.09 16 31 H 0.07 0.75 7.11 -51.92 -0.37 0.39 16 32 H 0.08 0.76 7.67 -51.93 -0.40 0.36 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.53 8.04 -51.93 -0.42 0.11 16 35 H 0.06 0.52 8.06 -51.93 -0.42 0.11 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.09 1.06 7.26 -51.93 -0.38 0.69 16 38 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 311.46 15.07 4.69 4.69 Total: -1.00 -31.59 311.46 -7.26 -38.86 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: -5.44 Total: 13.92 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: -2.36 Total: 1.37 kcal Atomic # 7 Polarization: -49.49 SS G_CDS: 0.39 Total: -49.11 kcal Atomic # 8 Polarization: -24.18 SS G_CDS: 0.17 Total: -24.01 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -4.71 Total: 14.28 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.59 -7.26 -38.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597650838.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.009 kcal (2) G-P(sol) polarization free energy of solvation -31.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds