Wall clock time and date at job start Mon Mar 30 2020 04:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86798 * 119.99680 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99880 * 3 2 1 5 5 H 1.48503 * 109.47261 * 150.00060 * 3 2 1 6 6 H 1.48500 * 109.47454 * 30.00053 * 3 2 1 7 7 C 1.38942 * 120.00191 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00129 * 359.97438 * 7 2 1 9 9 N 1.37097 * 119.99991 * 179.97438 * 7 2 1 10 10 C 1.34779 * 120.00203 * 179.97438 * 9 7 2 11 11 O 1.21298 * 120.00061 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00366 * 180.02562 * 10 9 7 13 13 N 1.46503 * 109.47189 * 180.02562 * 12 10 9 14 14 C 1.34781 * 119.99672 * 180.02562 * 13 12 10 15 15 O 1.21272 * 120.00143 * 359.97438 * 14 13 12 16 16 C 1.50700 * 119.99569 * 179.97438 * 14 13 12 17 17 H 1.09003 * 109.26058 * 60.00107 * 16 14 13 18 18 C 1.52868 * 109.27214 * 300.49630 * 16 14 13 19 19 C 1.53293 * 108.59410 * 184.84592 * 18 16 14 20 20 C 1.52878 * 108.58474 * 74.43846 * 19 18 16 21 21 C 1.52710 * 110.15359 * 305.48493 * 20 19 18 22 22 H 1.09002 * 115.38884 * 231.20975 * 21 20 19 23 23 C 1.53652 * 116.03164 * 90.19526 * 21 20 19 24 24 C 1.52021 * 120.51157 * 21.49088 * 21 20 19 25 25 H 1.08998 * 115.89215 * 209.95505 * 24 21 20 26 26 H 0.96996 * 120.00390 * 359.97438 * 1 2 3 27 27 H 0.96998 * 120.00598 * 0.02562 * 9 7 2 28 28 H 1.09004 * 109.46928 * 300.00314 * 12 10 9 29 29 H 1.09002 * 109.47231 * 60.00083 * 12 10 9 30 30 H 0.96997 * 119.99891 * 359.97438 * 13 12 10 31 31 H 1.09007 * 109.61691 * 304.58003 * 18 16 14 32 32 H 1.09000 * 109.61640 * 65.10827 * 18 16 14 33 33 H 1.09002 * 109.62300 * 194.16969 * 19 18 16 34 34 H 1.08999 * 109.61902 * 314.71289 * 19 18 16 35 35 H 1.09004 * 109.35498 * 65.68898 * 20 19 18 36 36 H 1.08992 * 109.35937 * 185.26760 * 20 19 18 37 37 H 1.08996 * 117.54143 * 355.69245 * 23 21 20 38 38 H 1.09003 * 117.53222 * 140.93784 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 3.5456 1.4403 0.7000 6 1 1.4454 2.6527 0.7000 7 6 2.0088 -1.2033 -0.0005 8 1 1.4689 -2.1386 -0.0005 9 7 3.3798 -1.2032 -0.0011 10 6 4.0538 -2.3704 -0.0011 11 8 3.4474 -3.4209 -0.0011 12 6 5.5608 -2.3704 -0.0011 13 7 6.0491 -3.7516 -0.0017 14 6 7.3743 -3.9978 -0.0013 15 8 8.1623 -3.0760 -0.0009 16 6 7.8766 -5.4186 -0.0013 17 1 7.5117 -5.9290 -0.8927 18 6 7.3539 -6.1386 1.2418 19 6 7.9708 -7.5411 1.2899 20 6 9.4337 -7.4156 1.7156 21 6 10.1686 -6.4451 0.7936 22 1 11.0987 -6.8201 0.3662 23 6 10.1640 -4.9705 1.2251 24 6 9.3973 -5.4132 -0.0134 25 1 9.8432 -5.1226 -0.9646 26 1 -0.4850 0.8400 0.0004 27 1 3.8649 -0.3632 -0.0007 28 1 5.9241 -1.8565 -0.8911 29 1 5.9241 -1.8565 0.8889 30 1 5.4188 -4.4889 -0.0016 31 1 7.6400 -5.5821 2.1344 32 1 6.2681 -6.2179 1.1893 33 1 7.4309 -8.1539 2.0118 34 1 7.9151 -7.9995 0.3025 35 1 9.4814 -7.0467 2.7402 36 1 9.9104 -8.3944 1.6638 37 1 9.5836 -4.7058 2.1089 38 1 11.0793 -4.3983 1.0738 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597650838.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:42 Heat of formation + Delta-G solvation = -84.124383 kcal Electronic energy + Delta-G solvation = -19986.374916 eV Core-core repulsion = 16827.908897 eV Total energy + Delta-G solvation = -3158.466019 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.59635 -40.43818 -39.20337 -36.30311 -35.38758 -34.00268 -33.82002 -32.25738 -29.33124 -26.58965 -25.76038 -23.50360 -22.67503 -21.48817 -21.25636 -20.55181 -19.40416 -18.39644 -17.55940 -17.18003 -16.84907 -16.73276 -16.44849 -15.67214 -15.38695 -14.88975 -14.78865 -14.63130 -14.34247 -14.26273 -14.01751 -13.74413 -13.53355 -13.03833 -12.95249 -12.46235 -12.29007 -12.05296 -12.01722 -11.78690 -11.59603 -11.30088 -11.10296 -10.68402 -10.62164 -10.50559 -10.34736 -10.15012 -8.46938 -6.08988 1.29743 1.32666 1.42536 1.61379 1.78434 1.99314 2.19139 2.80552 2.97760 3.09280 3.56531 3.70950 3.79568 3.97428 4.04492 4.11473 4.24647 4.27512 4.38734 4.39645 4.55305 4.58366 4.68771 4.75078 4.92946 5.09107 5.09263 5.20443 5.26490 5.31226 5.34650 5.37506 5.47451 5.50771 5.86802 6.46741 6.52767 6.76800 7.17879 7.28976 7.76429 8.69554 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.041649 B = 0.003683 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.124264 B = 7601.620887 C = 8073.472532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.007 4.007 3 Si 0.958 3.042 4 H -0.256 1.256 5 H -0.234 1.234 6 H -0.273 1.273 7 C -0.332 4.332 8 H 0.064 0.936 9 N -0.578 5.578 10 C 0.445 3.555 11 O -0.613 6.613 12 C 0.117 3.883 13 N -0.712 5.712 14 C 0.516 3.484 15 O -0.571 6.571 16 C -0.066 4.066 17 H 0.118 0.882 18 C -0.115 4.115 19 C -0.113 4.113 20 C -0.091 4.091 21 C -0.128 4.128 22 H 0.117 0.883 23 C -0.179 4.179 24 C -0.130 4.130 25 H 0.097 0.903 26 H 0.281 0.719 27 H 0.391 0.609 28 H 0.102 0.898 29 H 0.100 0.900 30 H 0.413 0.587 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.064 0.936 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.875 -10.508 1.837 23.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.207 4.207 3 Si 0.779 3.221 4 H -0.181 1.181 5 H -0.157 1.157 6 H -0.198 1.198 7 C -0.461 4.461 8 H 0.082 0.918 9 N -0.218 5.218 10 C 0.232 3.768 11 O -0.499 6.499 12 C -0.010 4.010 13 N -0.366 5.366 14 C 0.304 3.696 15 O -0.451 6.451 16 C -0.087 4.087 17 H 0.135 0.865 18 C -0.153 4.153 19 C -0.150 4.150 20 C -0.129 4.129 21 C -0.146 4.146 22 H 0.135 0.865 23 C -0.216 4.216 24 C -0.149 4.149 25 H 0.115 0.885 26 H 0.091 0.909 27 H 0.227 0.773 28 H 0.120 0.880 29 H 0.118 0.882 30 H 0.251 0.749 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.104 0.896 37 H 0.098 0.902 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 20.810 -10.420 1.841 23.346 hybrid contribution -0.621 1.090 -0.085 1.258 sum 20.189 -9.329 1.756 22.310 Atomic orbital electron populations 1.69773 1.08016 1.29485 1.49243 1.26052 0.96419 1.02552 0.95692 0.85450 0.79530 0.77096 0.80073 1.18074 1.15740 1.19755 1.19039 0.80960 0.95302 1.50813 0.91793 1.41940 1.06153 1.07438 1.66276 1.20515 0.90054 0.83877 0.82319 1.90525 1.70767 1.32257 1.56366 1.20859 0.89533 0.85825 1.04832 1.45817 1.07690 1.08284 1.74817 1.21198 0.81032 0.92603 0.74788 1.90655 1.55882 1.47477 1.51044 1.20642 0.95002 0.90780 1.02282 0.86450 1.21648 1.00766 0.97170 0.95737 1.21567 0.95513 0.94992 1.02966 1.21117 0.94923 0.99007 0.97809 1.22409 1.00866 0.90290 1.01043 0.86493 1.22978 1.02044 0.98231 0.98378 1.21365 0.91765 1.04660 0.97076 0.88500 0.90886 0.77273 0.88001 0.88211 0.74916 0.92292 0.90796 0.90270 0.90496 0.91781 0.89646 0.90158 0.89127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.32 13.96 21.66 0.30 -54.02 16 2 C -0.01 -0.38 5.50 84.93 0.47 0.08 16 3 Si 0.96 38.14 27.74 68.60 1.90 40.04 16 4 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 5 H -0.23 -7.99 6.52 99.48 0.65 -7.34 16 6 H -0.27 -10.75 7.11 99.48 0.71 -10.05 16 7 C -0.33 -18.86 10.16 84.04 0.85 -18.00 16 8 H 0.06 4.28 7.39 -2.91 -0.02 4.26 16 9 N -0.58 -26.62 5.09 -306.98 -1.56 -28.19 16 10 C 0.44 19.38 7.85 87.66 0.69 20.07 16 11 O -0.61 -31.42 15.24 -3.09 -0.05 -31.47 16 12 C 0.12 3.87 6.15 85.63 0.53 4.39 16 13 N -0.71 -21.60 5.42 -466.78 -2.53 -24.13 16 14 C 0.52 14.73 7.11 87.66 0.62 15.35 16 15 O -0.57 -19.62 15.66 -3.01 -0.05 -19.67 16 16 C -0.07 -1.39 2.58 -11.89 -0.03 -1.42 16 17 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 18 C -0.12 -2.14 4.82 30.65 0.15 -1.99 16 19 C -0.11 -1.55 5.93 30.65 0.18 -1.37 16 20 C -0.09 -1.19 5.83 30.46 0.18 -1.01 16 21 C -0.13 -1.99 6.19 -10.99 -0.07 -2.06 16 22 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 23 C -0.18 -3.67 9.17 30.56 0.28 -3.39 16 24 C -0.13 -2.63 4.68 -11.67 -0.05 -2.69 16 25 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 26 H 0.28 15.09 8.31 -92.71 -0.77 14.32 16 27 H 0.39 15.18 5.76 -92.71 -0.53 14.65 16 28 H 0.10 3.06 8.14 -2.39 -0.02 3.04 16 29 H 0.10 3.03 8.14 -2.39 -0.02 3.01 16 30 H 0.41 12.53 6.91 -92.71 -0.64 11.89 16 31 H 0.06 1.22 7.11 -2.38 -0.02 1.20 16 32 H 0.07 1.40 7.67 -2.39 -0.02 1.38 16 33 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.08 0.96 8.04 -2.39 -0.02 0.94 16 35 H 0.06 0.88 8.06 -2.38 -0.02 0.86 16 36 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.08 1.82 7.26 -2.39 -0.02 1.80 16 38 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -71.09 311.46 1.66 -69.43 By element: Atomic # 1 Polarization: 40.18 SS G_CDS: -0.15 Total: 40.03 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: 3.79 Total: 7.97 kcal Atomic # 7 Polarization: -102.54 SS G_CDS: -3.79 Total: -106.33 kcal Atomic # 8 Polarization: -51.04 SS G_CDS: -0.09 Total: -51.14 kcal Atomic # 14 Polarization: 38.14 SS G_CDS: 1.90 Total: 40.04 kcal Total: -71.09 1.66 -69.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597650838.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.690 kcal (2) G-P(sol) polarization free energy of solvation -71.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds