Wall clock time and date at job start Mon Mar 30 2020 04:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86799 * 119.99904 * 2 1 4 4 H 1.48494 * 109.46945 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47105 * 300.00375 * 3 2 1 6 6 H 1.48503 * 109.47114 * 60.00201 * 3 2 1 7 7 C 1.38949 * 120.00055 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99830 * 179.97438 * 7 2 1 9 9 N 1.37099 * 120.00033 * 359.97438 * 7 2 1 10 10 C 1.34779 * 120.00177 * 180.02562 * 9 7 2 11 11 O 1.21298 * 119.99776 * 0.02562 * 10 9 7 12 12 C 1.50697 * 120.00118 * 179.97438 * 10 9 7 13 13 N 1.46500 * 109.46727 * 179.97438 * 12 10 9 14 14 C 1.34780 * 119.99600 * 180.02562 * 13 12 10 15 15 O 1.21279 * 120.00444 * 359.97438 * 14 13 12 16 16 C 1.50696 * 120.00015 * 180.02562 * 14 13 12 17 17 H 1.09003 * 109.36040 * 60.27293 * 16 14 13 18 18 C 1.53191 * 109.21769 * 300.75470 * 16 14 13 19 19 C 1.53301 * 108.42152 * 185.46464 * 18 16 14 20 20 C 1.52870 * 108.73870 * 74.30400 * 19 18 16 21 21 C 1.52078 * 110.51627 * 305.01908 * 20 19 18 22 22 H 1.08993 * 114.64119 * 165.63080 * 21 20 19 23 23 C 1.52304 * 119.83568 * 310.45023 * 21 20 19 24 24 C 1.52069 * 120.01774 * 21.70085 * 21 20 19 25 25 H 1.08997 * 117.25658 * 143.33754 * 24 21 20 26 26 H 0.96994 * 120.00325 * 359.97438 * 1 2 3 27 27 H 0.97001 * 120.00009 * 0.02562 * 9 7 2 28 28 H 1.09000 * 109.46931 * 60.00151 * 12 10 9 29 29 H 1.08995 * 109.47632 * 300.00220 * 12 10 9 30 30 H 0.96995 * 120.00421 * 359.97438 * 13 12 10 31 31 H 1.09001 * 109.88664 * 65.66963 * 18 16 14 32 32 H 1.09004 * 109.50709 * 305.03040 * 18 16 14 33 33 H 1.09002 * 109.61781 * 314.48032 * 19 18 16 34 34 H 1.08998 * 109.61503 * 194.12173 * 19 18 16 35 35 H 1.08995 * 109.27150 * 65.28940 * 20 19 18 36 36 H 1.09004 * 109.26589 * 184.75498 * 20 19 18 37 37 H 1.09006 * 117.53539 * 217.19314 * 23 21 20 38 38 H 1.09002 * 117.54237 * 2.44271 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7080 1.3464 -0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5579 -0.0005 11 8 3.2103 -3.5578 -0.0001 12 6 1.2438 -4.8629 0.0000 13 7 2.1959 -5.9764 -0.0007 14 6 1.7466 -7.2471 -0.0009 15 8 0.5543 -7.4688 0.0001 16 6 2.7259 -8.3925 -0.0010 17 1 3.3483 -8.3359 0.8920 18 6 3.6158 -8.2949 -1.2441 19 6 4.5099 -9.5390 -1.2987 20 6 3.6620 -10.7345 -1.7329 21 6 2.4595 -10.8962 -0.8161 22 1 1.6841 -11.5610 -1.1965 23 6 2.6530 -10.8952 0.6946 24 6 1.9598 -9.7136 -0.0012 25 1 0.8821 -9.6193 0.1327 26 1 -0.4850 0.8400 0.0004 27 1 0.3534 -2.3907 -0.0005 28 1 0.6168 -4.9209 -0.8897 29 1 0.6175 -4.9206 0.8902 30 1 3.1495 -5.7992 -0.0018 31 1 4.2361 -7.4005 -1.1868 32 1 2.9912 -8.2537 -2.1366 33 1 4.9329 -9.7292 -0.3123 34 1 5.3140 -9.3804 -2.0173 35 1 3.3166 -10.5784 -2.7549 36 1 4.2688 -11.6392 -1.6932 37 1 2.0304 -11.5694 1.2829 38 1 3.6625 -10.7352 1.0734 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597650839.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:45 Heat of formation + Delta-G solvation = -70.952281 kcal Electronic energy + Delta-G solvation = -19841.969141 eV Core-core repulsion = 16684.074307 eV Total energy + Delta-G solvation = -3157.894834 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.44129 -38.79042 -37.88360 -34.49783 -33.80554 -33.10108 -31.47773 -31.23832 -27.64162 -25.40128 -24.35585 -22.81411 -21.58192 -20.14815 -19.59754 -18.53805 -18.15146 -17.45003 -16.15091 -15.49952 -15.39667 -15.11554 -14.53723 -14.42965 -14.19783 -14.00076 -13.73992 -13.39731 -13.35905 -12.73035 -12.24503 -12.19716 -11.81860 -11.65885 -11.62329 -11.38768 -11.15135 -11.10819 -10.46797 -10.41765 -10.33420 -10.01089 -9.80273 -9.65789 -9.54859 -8.78194 -8.64129 -8.11201 -6.52550 -3.94604 2.83779 3.09525 3.21403 3.27190 3.37957 3.63341 3.73123 4.10485 4.42078 4.58149 4.61437 4.82877 4.87262 4.93400 5.03268 5.16019 5.17297 5.27118 5.28189 5.46740 5.58351 5.63732 5.77966 5.87152 5.90522 5.93098 5.96672 5.99366 6.06550 6.11925 6.14771 6.28235 6.70394 7.45220 7.82791 7.91306 8.42931 8.47918 9.03635 9.38330 9.86087 10.64429 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.047051 B = 0.003363 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.956892 B = 8323.035178 C = 8699.886487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.025 3.975 3 Si 0.933 3.067 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.305 4.305 8 H 0.106 0.894 9 N -0.549 5.549 10 C 0.428 3.572 11 O -0.598 6.598 12 C 0.108 3.892 13 N -0.706 5.706 14 C 0.517 3.483 15 O -0.549 6.549 16 C -0.073 4.073 17 H 0.099 0.901 18 C -0.113 4.113 19 C -0.120 4.120 20 C -0.089 4.089 21 C -0.140 4.140 22 H 0.098 0.902 23 C -0.182 4.182 24 C -0.134 4.134 25 H 0.123 0.877 26 H 0.274 0.726 27 H 0.396 0.604 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.411 0.589 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.092 0.908 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.118 -18.115 -1.342 18.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.177 4.177 3 Si 0.759 3.241 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.434 4.434 8 H 0.124 0.876 9 N -0.184 5.184 10 C 0.214 3.786 11 O -0.484 6.484 12 C -0.020 4.020 13 N -0.360 5.360 14 C 0.303 3.697 15 O -0.427 6.427 16 C -0.094 4.094 17 H 0.117 0.883 18 C -0.151 4.151 19 C -0.158 4.158 20 C -0.126 4.126 21 C -0.158 4.158 22 H 0.116 0.884 23 C -0.219 4.219 24 C -0.153 4.153 25 H 0.141 0.859 26 H 0.084 0.916 27 H 0.230 0.770 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.249 0.751 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.110 0.890 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 4.927 -18.059 -1.336 18.767 hybrid contribution 0.080 1.011 0.077 1.017 sum 5.007 -17.048 -1.259 17.812 Atomic orbital electron populations 1.69621 1.06024 1.28438 1.49390 1.25331 0.95667 0.99951 0.96795 0.85756 0.79686 0.80807 0.77834 1.19118 1.20607 1.20605 1.19784 0.93493 0.81996 1.48152 0.87615 1.41809 1.09489 1.04497 1.62609 1.19759 0.88298 0.85011 0.85556 1.90494 1.13706 1.86845 1.57376 1.20951 0.91960 0.85867 1.03185 1.45715 1.11538 1.04634 1.74127 1.20467 0.89564 0.83780 0.75917 1.90646 1.16950 1.84691 1.50402 1.20803 0.95927 0.92050 1.00661 0.88340 1.21653 0.97611 0.98731 0.97084 1.21599 0.97753 0.94491 1.01924 1.20861 0.95015 0.98214 0.98557 1.21845 1.00084 1.00983 0.92888 0.88401 1.23135 1.01843 1.02155 0.94797 1.22123 1.00558 0.87890 1.04698 0.85922 0.91629 0.77040 0.89912 0.89897 0.75133 0.90698 0.90981 0.91617 0.91275 0.91409 0.91590 0.88962 0.88747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.89 13.05 55.50 0.72 -23.17 16 2 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 3 Si 0.93 20.49 29.55 -169.99 -5.02 15.46 16 4 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.30 -8.28 9.68 -14.93 -0.14 -8.42 16 8 H 0.11 2.99 7.16 -52.49 -0.38 2.62 16 9 N -0.55 -13.63 5.29 -10.96 -0.06 -13.69 16 10 C 0.43 9.81 7.85 -10.99 -0.09 9.72 16 11 O -0.60 -15.21 15.24 5.54 0.08 -15.13 16 12 C 0.11 2.01 6.15 -5.20 -0.03 1.97 16 13 N -0.71 -11.73 5.42 -61.48 -0.33 -12.07 16 14 C 0.52 8.15 7.15 -10.99 -0.08 8.07 16 15 O -0.55 -10.32 15.30 5.56 0.09 -10.23 16 16 C -0.07 -0.87 2.47 -91.82 -0.23 -1.10 16 17 H 0.10 1.06 8.06 -51.93 -0.42 0.64 16 18 C -0.11 -1.19 5.06 -26.48 -0.13 -1.32 16 19 C -0.12 -1.02 5.69 -26.64 -0.15 -1.17 16 20 C -0.09 -0.74 5.94 -27.27 -0.16 -0.90 16 21 C -0.14 -1.33 6.00 -91.92 -0.55 -1.88 16 22 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 23 C -0.18 -1.69 9.66 -26.75 -0.26 -1.95 16 24 C -0.13 -1.55 5.51 -90.90 -0.50 -2.05 16 25 H 0.12 1.68 6.74 -51.93 -0.35 1.33 16 26 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 27 H 0.40 9.46 7.90 -40.82 -0.32 9.14 16 28 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 29 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 30 H 0.41 6.66 6.92 -40.82 -0.28 6.37 16 31 H 0.07 0.78 7.69 -51.93 -0.40 0.38 16 32 H 0.07 0.82 8.05 -51.93 -0.42 0.40 16 33 H 0.07 0.53 7.11 -51.93 -0.37 0.16 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.09 0.80 7.26 -51.93 -0.38 0.42 16 LS Contribution 314.02 15.07 4.73 4.73 Total: -1.00 -30.47 314.02 -7.62 -38.09 By element: Atomic # 1 Polarization: 19.86 SS G_CDS: -5.41 Total: 14.46 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: -2.42 Total: 1.54 kcal Atomic # 7 Polarization: -49.25 SS G_CDS: 0.33 Total: -48.92 kcal Atomic # 8 Polarization: -25.53 SS G_CDS: 0.17 Total: -25.36 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.47 -7.62 -38.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597650839.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.864 kcal (2) G-P(sol) polarization free energy of solvation -30.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds