Wall clock time and date at job start Mon Mar 30 2020 04:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86799 * 119.99904 * 2 1 4 4 H 1.48494 * 109.46945 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47105 * 300.00375 * 3 2 1 6 6 H 1.48503 * 109.47114 * 60.00201 * 3 2 1 7 7 C 1.38949 * 120.00055 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99830 * 179.97438 * 7 2 1 9 9 N 1.37099 * 120.00033 * 359.97438 * 7 2 1 10 10 C 1.34779 * 120.00177 * 180.02562 * 9 7 2 11 11 O 1.21298 * 119.99776 * 0.02562 * 10 9 7 12 12 C 1.50697 * 120.00118 * 179.97438 * 10 9 7 13 13 N 1.46500 * 109.46727 * 179.97438 * 12 10 9 14 14 C 1.34780 * 119.99600 * 180.02562 * 13 12 10 15 15 O 1.21279 * 120.00444 * 359.97438 * 14 13 12 16 16 C 1.50696 * 120.00015 * 180.02562 * 14 13 12 17 17 H 1.09003 * 109.36040 * 60.27293 * 16 14 13 18 18 C 1.53191 * 109.21769 * 300.75470 * 16 14 13 19 19 C 1.53301 * 108.42152 * 185.46464 * 18 16 14 20 20 C 1.52870 * 108.73870 * 74.30400 * 19 18 16 21 21 C 1.52078 * 110.51627 * 305.01908 * 20 19 18 22 22 H 1.08993 * 114.64119 * 165.63080 * 21 20 19 23 23 C 1.52304 * 119.83568 * 310.45023 * 21 20 19 24 24 C 1.52069 * 120.01774 * 21.70085 * 21 20 19 25 25 H 1.08997 * 117.25658 * 143.33754 * 24 21 20 26 26 H 0.96994 * 120.00325 * 359.97438 * 1 2 3 27 27 H 0.97001 * 120.00009 * 0.02562 * 9 7 2 28 28 H 1.09000 * 109.46931 * 60.00151 * 12 10 9 29 29 H 1.08995 * 109.47632 * 300.00220 * 12 10 9 30 30 H 0.96995 * 120.00421 * 359.97438 * 13 12 10 31 31 H 1.09001 * 109.88664 * 65.66963 * 18 16 14 32 32 H 1.09004 * 109.50709 * 305.03040 * 18 16 14 33 33 H 1.09002 * 109.61781 * 314.48032 * 19 18 16 34 34 H 1.08998 * 109.61503 * 194.12173 * 19 18 16 35 35 H 1.08995 * 109.27150 * 65.28940 * 20 19 18 36 36 H 1.09004 * 109.26589 * 184.75498 * 20 19 18 37 37 H 1.09006 * 117.53539 * 217.19314 * 23 21 20 38 38 H 1.09002 * 117.54237 * 2.44271 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7080 1.3464 -0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5579 -0.0005 11 8 3.2103 -3.5578 -0.0001 12 6 1.2438 -4.8629 0.0000 13 7 2.1959 -5.9764 -0.0007 14 6 1.7466 -7.2471 -0.0009 15 8 0.5543 -7.4688 0.0001 16 6 2.7259 -8.3925 -0.0010 17 1 3.3483 -8.3359 0.8920 18 6 3.6158 -8.2949 -1.2441 19 6 4.5099 -9.5390 -1.2987 20 6 3.6620 -10.7345 -1.7329 21 6 2.4595 -10.8962 -0.8161 22 1 1.6841 -11.5610 -1.1965 23 6 2.6530 -10.8952 0.6946 24 6 1.9598 -9.7136 -0.0012 25 1 0.8821 -9.6193 0.1327 26 1 -0.4850 0.8400 0.0004 27 1 0.3534 -2.3907 -0.0005 28 1 0.6168 -4.9209 -0.8897 29 1 0.6175 -4.9206 0.8902 30 1 3.1495 -5.7992 -0.0018 31 1 4.2361 -7.4005 -1.1868 32 1 2.9912 -8.2537 -2.1366 33 1 4.9329 -9.7292 -0.3123 34 1 5.3140 -9.3804 -2.0173 35 1 3.3166 -10.5784 -2.7549 36 1 4.2688 -11.6392 -1.6932 37 1 2.0304 -11.5694 1.2829 38 1 3.6625 -10.7352 1.0734 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597650839.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:45 Heat of formation + Delta-G solvation = -91.220151 kcal Electronic energy + Delta-G solvation = -19842.848022 eV Core-core repulsion = 16684.074307 eV Total energy + Delta-G solvation = -3158.773715 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.54228 -40.31217 -39.28816 -36.27258 -35.38799 -33.99735 -33.38300 -32.22333 -29.19855 -26.69507 -25.81956 -23.58498 -22.56735 -21.40587 -21.27298 -20.09780 -19.32099 -18.79305 -17.52148 -16.96855 -16.86941 -16.63623 -16.16464 -15.72846 -15.46741 -15.25361 -14.76694 -14.67749 -14.30158 -13.96401 -13.72893 -13.56214 -13.49858 -12.94821 -12.86160 -12.46712 -12.44936 -12.14280 -12.11046 -11.84764 -11.59041 -11.26757 -10.91616 -10.70471 -10.58972 -10.54055 -10.20707 -10.09312 -8.52301 -6.02693 1.34366 1.42561 1.56704 1.57433 1.89239 2.01770 2.31435 2.85685 3.10646 3.14828 3.58251 3.63640 3.82953 4.01620 4.15763 4.21408 4.25022 4.30706 4.38952 4.41912 4.46476 4.52012 4.67054 4.86668 4.94215 5.04367 5.16726 5.20482 5.24112 5.27734 5.37301 5.39563 5.42997 5.47377 5.90576 6.44410 6.52627 7.02144 7.15724 7.42742 7.92477 8.64893 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.047051 B = 0.003363 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.956892 B = 8323.035178 C = 8699.886487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.011 4.011 3 Si 0.998 3.002 4 H -0.269 1.269 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.337 4.337 8 H 0.087 0.913 9 N -0.560 5.560 10 C 0.433 3.567 11 O -0.623 6.623 12 C 0.120 3.880 13 N -0.706 5.706 14 C 0.516 3.484 15 O -0.581 6.581 16 C -0.064 4.064 17 H 0.115 0.885 18 C -0.112 4.112 19 C -0.116 4.116 20 C -0.089 4.089 21 C -0.133 4.133 22 H 0.100 0.900 23 C -0.167 4.167 24 C -0.160 4.160 25 H 0.095 0.905 26 H 0.280 0.720 27 H 0.398 0.602 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.414 0.586 31 H 0.075 0.925 32 H 0.059 0.941 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.067 0.933 36 H 0.085 0.915 37 H 0.099 0.901 38 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.313 -18.989 -1.357 20.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.212 4.212 3 Si 0.821 3.179 4 H -0.193 1.193 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.466 4.466 8 H 0.105 0.895 9 N -0.195 5.195 10 C 0.220 3.780 11 O -0.511 6.511 12 C -0.008 4.008 13 N -0.360 5.360 14 C 0.304 3.696 15 O -0.462 6.462 16 C -0.085 4.085 17 H 0.132 0.868 18 C -0.150 4.150 19 C -0.153 4.153 20 C -0.126 4.126 21 C -0.152 4.152 22 H 0.118 0.882 23 C -0.204 4.204 24 C -0.179 4.179 25 H 0.113 0.887 26 H 0.089 0.911 27 H 0.232 0.768 28 H 0.109 0.891 29 H 0.110 0.890 30 H 0.252 0.748 31 H 0.093 0.907 32 H 0.077 0.923 33 H 0.094 0.906 34 H 0.101 0.899 35 H 0.085 0.915 36 H 0.103 0.897 37 H 0.117 0.883 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 6.117 -18.955 -1.353 19.963 hybrid contribution -0.328 1.221 0.084 1.267 sum 5.789 -17.734 -1.269 18.698 Atomic orbital electron populations 1.69686 1.07054 1.29606 1.49340 1.26146 0.96534 1.02734 0.95746 0.84800 0.78165 0.76643 0.78306 1.19332 1.19636 1.19635 1.19790 0.92994 0.83516 1.50332 0.89495 1.41860 1.09579 1.04653 1.63404 1.20402 0.88137 0.85874 0.83581 1.90470 1.15067 1.87525 1.57995 1.20768 0.91860 0.84188 1.03996 1.45746 1.11306 1.04538 1.74412 1.21199 0.89842 0.84049 0.74492 1.90632 1.18661 1.85084 1.51780 1.20832 0.95188 0.90371 1.02080 0.86754 1.21665 0.97501 1.00146 0.95673 1.21598 0.97548 0.93194 1.02964 1.20902 0.94636 0.98973 0.98107 1.21966 1.00515 0.99236 0.93448 0.88164 1.23221 1.02186 1.00165 0.94795 1.21996 0.99229 0.88670 1.08005 0.88703 0.91059 0.76759 0.89084 0.89009 0.74759 0.90683 0.92254 0.90625 0.89947 0.91477 0.89685 0.88274 0.87367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.81 13.05 21.66 0.28 -48.52 16 2 C -0.01 -0.57 5.50 84.93 0.47 -0.11 16 3 Si 1.00 41.66 29.55 68.60 2.03 43.69 16 4 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 5 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 6 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 7 C -0.34 -18.58 9.68 84.04 0.81 -17.77 16 8 H 0.09 5.04 7.16 -2.91 -0.02 5.02 16 9 N -0.56 -28.22 5.29 -306.98 -1.62 -29.84 16 10 C 0.43 20.05 7.85 87.66 0.69 20.74 16 11 O -0.62 -32.02 15.24 -3.09 -0.05 -32.07 16 12 C 0.12 4.45 6.15 85.63 0.53 4.97 16 13 N -0.71 -23.29 5.42 -466.80 -2.53 -25.82 16 14 C 0.52 16.19 7.15 87.66 0.63 16.82 16 15 O -0.58 -22.14 15.30 -3.03 -0.05 -22.18 16 16 C -0.06 -1.46 2.47 -11.57 -0.03 -1.48 16 17 H 0.11 2.24 8.06 -2.39 -0.02 2.22 16 18 C -0.11 -2.20 5.06 30.76 0.16 -2.04 16 19 C -0.12 -1.64 5.69 30.65 0.17 -1.47 16 20 C -0.09 -1.24 5.94 30.25 0.18 -1.06 16 21 C -0.13 -2.28 6.00 -11.64 -0.07 -2.35 16 22 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 23 C -0.17 -2.71 9.66 30.58 0.30 -2.42 16 24 C -0.16 -3.58 5.51 -10.98 -0.06 -3.64 16 25 H 0.09 2.67 6.74 -2.39 -0.02 2.65 16 26 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 27 H 0.40 19.37 7.90 -92.71 -0.73 18.64 16 28 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 29 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 30 H 0.41 13.27 6.92 -92.71 -0.64 12.62 16 31 H 0.07 1.46 7.69 -2.39 -0.02 1.44 16 32 H 0.06 1.31 8.05 -2.39 -0.02 1.29 16 33 H 0.08 0.95 7.11 -2.39 -0.02 0.94 16 34 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.07 0.95 8.14 -2.39 -0.02 0.94 16 36 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 37 H 0.10 1.48 8.14 -2.38 -0.02 1.46 16 38 H 0.11 1.47 7.26 -2.39 -0.02 1.46 16 Total: -1.00 -65.17 314.02 1.54 -63.63 By element: Atomic # 1 Polarization: 41.21 SS G_CDS: -0.29 Total: 40.92 kcal Atomic # 6 Polarization: 6.43 SS G_CDS: 3.77 Total: 10.20 kcal Atomic # 7 Polarization: -100.32 SS G_CDS: -3.87 Total: -104.19 kcal Atomic # 8 Polarization: -54.15 SS G_CDS: -0.09 Total: -54.25 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.69 kcal Total: -65.17 1.54 -63.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597650839.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.595 kcal (2) G-P(sol) polarization free energy of solvation -65.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds