Wall clock time and date at job start Mon Mar 30 2020 05:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50707 * 109.47201 * 2 1 4 4 N 1.30255 * 125.61921 * 89.96885 * 3 2 1 5 5 C 1.34479 * 108.69704 * 179.78098 * 4 3 2 6 6 C 1.50705 * 126.16433 * 180.27167 * 5 4 3 7 7 C 1.34331 * 107.66958 * 0.39882 * 5 4 3 8 8 C 1.50706 * 126.43964 * 179.88043 * 7 5 4 9 9 N 1.46497 * 109.47174 * 89.70887 * 8 7 5 10 10 C 1.34777 * 119.99525 * 179.97438 * 9 8 7 11 11 O 1.21283 * 120.00463 * 0.02562 * 10 9 8 12 12 C 1.50700 * 119.99675 * 179.72583 * 10 9 8 13 13 H 1.09009 * 109.47352 * 300.27556 * 12 10 9 14 14 C 1.52996 * 109.47442 * 60.27868 * 12 10 9 15 15 C 1.50703 * 109.47148 * 180.28037 * 12 10 9 16 16 H 1.08001 * 120.00037 * 359.97438 * 15 12 10 17 17 C 1.37875 * 120.00214 * 179.97438 * 15 12 10 18 18 N 1.31516 * 120.00297 * 179.97438 * 17 15 12 19 19 Si 1.86800 * 119.99907 * 359.97438 * 17 15 12 20 20 H 1.48502 * 109.47496 * 89.99791 * 19 17 15 21 21 H 1.48503 * 109.47098 * 209.99926 * 19 17 15 22 22 H 1.48504 * 109.46915 * 329.99781 * 19 17 15 23 23 O 1.33971 * 125.61885 * 270.00343 * 3 2 1 24 24 H 1.08999 * 109.47129 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47467 * 300.00434 * 1 2 3 26 26 H 1.09007 * 109.47247 * 60.00308 * 1 2 3 27 27 H 1.08997 * 109.47201 * 240.00030 * 2 1 3 28 28 H 1.08998 * 109.47095 * 119.99439 * 2 1 3 29 29 H 1.08994 * 109.47187 * 270.14984 * 6 5 4 30 30 H 1.09000 * 109.46639 * 30.15003 * 6 5 4 31 31 H 1.08999 * 109.46765 * 150.14562 * 6 5 4 32 32 H 1.08995 * 109.46956 * 329.70591 * 8 7 5 33 33 H 1.09001 * 109.46317 * 209.71038 * 8 7 5 34 34 H 0.97000 * 120.00580 * 0.02562 * 9 8 7 35 35 H 1.08995 * 109.47223 * 59.99497 * 14 12 10 36 36 H 1.08996 * 109.47637 * 180.02562 * 14 12 10 37 37 H 1.09004 * 109.46762 * 299.99804 * 14 12 10 38 38 H 0.97001 * 119.99846 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2847 2.1363 1.0588 5 6 2.7183 3.3475 0.6674 6 6 3.1266 4.4812 1.5726 7 6 2.7193 3.3658 -0.6758 8 6 3.1277 4.5197 -1.5550 9 7 4.5621 4.4331 -1.8395 10 6 5.1531 5.3653 -2.6130 11 8 4.4976 6.2760 -3.0730 12 6 6.6299 5.2796 -2.9006 13 1 7.1856 5.3187 -1.9636 14 6 6.9341 3.9637 -3.6194 15 6 7.0392 6.4362 -3.7758 16 1 6.3033 7.1606 -4.0924 17 6 8.3529 6.5697 -4.1723 18 7 8.7100 7.5788 -4.9365 19 14 9.6258 5.3172 -3.6241 20 1 9.6973 4.2164 -4.6183 21 1 10.9531 5.9746 -3.5172 22 1 9.2389 4.7649 -2.3010 23 8 2.2924 2.1565 -1.0891 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8901 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5137 0.8900 29 1 2.2572 5.0999 1.7948 30 1 3.5319 4.0774 2.5004 31 1 3.8861 5.0861 1.0772 32 1 2.9146 5.4587 -1.0443 33 1 2.5687 4.4795 -2.4899 34 1 5.0865 3.7044 -1.4719 35 1 6.3786 3.9246 -4.5563 36 1 8.0023 3.9015 -3.8270 37 1 6.6382 3.1271 -2.9863 38 1 9.6343 7.6728 -5.2151 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597689142.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:36 Heat of formation + Delta-G solvation = -25.100269 kcal Electronic energy + Delta-G solvation = -19980.122095 eV Core-core repulsion = 16824.215553 eV Total energy + Delta-G solvation = -3155.906541 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.53770 -39.03171 -35.38900 -35.17905 -33.94910 -33.85994 -31.49312 -30.77545 -28.39127 -26.04741 -25.15655 -23.80617 -22.42242 -21.71372 -20.66575 -19.58691 -17.15989 -16.85719 -16.70775 -16.06926 -15.41214 -15.29806 -14.76876 -14.47521 -14.28542 -13.65942 -13.50938 -13.39995 -13.00865 -12.99567 -12.86380 -12.35786 -12.27083 -12.23304 -12.08028 -11.60488 -11.55381 -11.04672 -11.00135 -10.70169 -10.60156 -10.33074 -9.65833 -9.12506 -9.09318 -8.73354 -8.60718 -8.54155 -6.06606 -4.07230 1.17576 2.39807 2.45990 3.22452 3.29995 3.35651 3.48858 3.68343 3.83141 4.36526 4.46267 4.61059 4.74812 4.75587 4.91810 5.16733 5.23320 5.30703 5.37706 5.44971 5.47698 5.60507 5.65020 5.72819 5.82472 5.88042 5.96978 6.09310 6.20130 6.28547 6.41419 6.69003 6.74563 7.13217 7.50936 7.56642 8.00471 8.52151 8.98334 9.12964 9.52058 11.06290 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.030979 B = 0.004059 C = 0.003935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.621335 B = 6896.083034 C = 7113.188304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.026 4.026 3 C 0.195 3.805 4 N -0.482 5.482 5 C 0.009 3.991 6 C -0.076 4.076 7 C -0.064 4.064 8 C 0.209 3.791 9 N -0.746 5.746 10 C 0.531 3.469 11 O -0.527 6.527 12 C -0.003 4.003 13 H 0.054 0.946 14 C -0.145 4.145 15 C -0.507 4.507 16 H 0.094 0.906 17 C 0.071 3.929 18 N -0.895 5.895 19 Si 0.884 3.116 20 H -0.278 1.278 21 H -0.295 1.295 22 H -0.267 1.267 23 O -0.194 6.194 24 H 0.072 0.928 25 H 0.063 0.937 26 H 0.060 0.940 27 H 0.094 0.906 28 H 0.105 0.895 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.098 0.902 33 H 0.081 0.919 34 H 0.398 0.602 35 H 0.058 0.942 36 H 0.050 0.950 37 H 0.032 0.968 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.123 -15.438 12.044 23.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.064 4.064 3 C -0.013 4.013 4 N -0.212 5.212 5 C -0.112 4.112 6 C -0.133 4.133 7 C -0.117 4.117 8 C 0.085 3.915 9 N -0.402 5.402 10 C 0.320 3.680 11 O -0.401 6.401 12 C -0.024 4.024 13 H 0.071 0.929 14 C -0.202 4.202 15 C -0.545 4.545 16 H 0.112 0.888 17 C -0.131 4.131 18 N -0.533 5.533 19 Si 0.714 3.286 20 H -0.205 1.205 21 H -0.223 1.223 22 H -0.193 1.193 23 O -0.080 6.080 24 H 0.091 0.909 25 H 0.082 0.918 26 H 0.079 0.921 27 H 0.112 0.888 28 H 0.124 0.876 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.099 0.901 32 H 0.116 0.884 33 H 0.100 0.900 34 H 0.232 0.768 35 H 0.077 0.923 36 H 0.068 0.932 37 H 0.051 0.949 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.537 -14.858 12.146 23.485 hybrid contribution 1.109 -0.864 -0.308 1.439 sum -12.428 -15.722 11.838 23.276 Atomic orbital electron populations 1.21783 0.93059 1.02960 1.03020 1.20070 0.96872 0.84235 1.05231 1.26285 0.99489 0.96706 0.78775 1.70372 1.16977 1.03556 1.30265 1.21616 1.02829 0.94682 0.92083 1.20200 1.01882 0.93191 0.98057 1.23239 1.06892 0.86645 0.94901 1.19444 0.83784 0.90860 0.97411 1.46375 1.07824 1.31080 1.54936 1.21347 0.91207 0.79843 0.75613 1.90599 1.65869 1.33494 1.50146 1.19318 0.87919 0.96606 0.98605 0.92866 1.22122 1.01148 0.96234 1.00745 1.20935 0.95545 1.08391 1.29645 0.88798 1.24974 0.98007 0.95432 0.94659 1.69880 1.17946 1.30054 1.35436 0.86920 0.80905 0.81223 0.79532 1.20510 1.22257 1.19255 1.84409 1.63779 1.22346 1.37513 0.90864 0.91768 0.92078 0.88795 0.87629 0.90497 0.90444 0.90081 0.88402 0.90036 0.76849 0.92292 0.93200 0.94926 0.92523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.89 37.16 0.37 -0.56 16 2 C -0.03 -0.19 6.56 -27.88 -0.18 -0.37 16 3 C 0.19 2.28 7.60 -12.94 -0.10 2.19 16 4 N -0.48 -6.40 11.29 -7.35 -0.08 -6.48 16 5 C 0.01 0.11 7.11 -82.81 -0.59 -0.47 16 6 C -0.08 -0.80 10.05 36.01 0.36 -0.44 16 7 C -0.06 -0.86 6.75 -35.68 -0.24 -1.10 16 8 C 0.21 2.99 5.83 -5.19 -0.03 2.96 16 9 N -0.75 -12.16 5.45 -61.47 -0.33 -12.50 16 10 C 0.53 11.38 7.15 -10.98 -0.08 11.30 16 11 O -0.53 -13.27 15.46 5.55 0.09 -13.18 16 12 C 0.00 -0.07 2.23 -92.92 -0.21 -0.27 16 13 H 0.05 1.19 7.20 -51.92 -0.37 0.82 16 14 C -0.14 -2.98 8.57 37.16 0.32 -2.66 16 15 C -0.51 -14.56 8.96 -34.44 -0.31 -14.87 16 16 H 0.09 3.07 7.00 -52.49 -0.37 2.70 16 17 C 0.07 2.04 5.45 -17.82 -0.10 1.95 16 18 N -0.90 -27.58 13.96 55.43 0.77 -26.81 16 19 Si 0.88 21.24 24.37 -169.99 -4.14 17.09 16 20 H -0.28 -6.48 6.87 56.52 0.39 -6.09 16 21 H -0.30 -7.14 7.11 56.52 0.40 -6.74 16 22 H -0.27 -5.97 6.53 56.52 0.37 -5.60 16 23 O -0.19 -2.59 10.78 5.38 0.06 -2.53 16 24 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.08 0.85 7.80 -51.93 -0.40 0.44 16 32 H 0.10 1.34 7.81 -51.93 -0.41 0.93 16 33 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 34 H 0.40 5.74 7.89 -40.82 -0.32 5.42 16 35 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 36 H 0.05 1.07 3.28 -51.93 -0.17 0.90 16 37 H 0.03 0.54 7.57 -51.93 -0.39 0.14 16 38 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 318.07 15.07 4.79 4.79 Total: -1.00 -34.29 318.07 -5.06 -39.35 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -5.42 Total: 2.62 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: -0.78 Total: -2.36 kcal Atomic # 7 Polarization: -46.14 SS G_CDS: 0.36 Total: -45.78 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: 0.14 Total: -15.71 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.14 Total: 17.09 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -34.29 -5.06 -39.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597689142.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.250 kcal (2) G-P(sol) polarization free energy of solvation -34.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds