Wall clock time and date at job start Mon Mar 30 2020 05:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50707 * 109.47201 * 2 1 4 4 N 1.30255 * 125.61921 * 89.96885 * 3 2 1 5 5 C 1.34479 * 108.69704 * 179.78098 * 4 3 2 6 6 C 1.50705 * 126.16433 * 180.27167 * 5 4 3 7 7 C 1.34331 * 107.66958 * 0.39882 * 5 4 3 8 8 C 1.50706 * 126.43964 * 179.88043 * 7 5 4 9 9 N 1.46497 * 109.47174 * 89.70887 * 8 7 5 10 10 C 1.34777 * 119.99525 * 179.97438 * 9 8 7 11 11 O 1.21283 * 120.00463 * 0.02562 * 10 9 8 12 12 C 1.50700 * 119.99675 * 179.72583 * 10 9 8 13 13 H 1.09009 * 109.47352 * 300.27556 * 12 10 9 14 14 C 1.52996 * 109.47442 * 60.27868 * 12 10 9 15 15 C 1.50703 * 109.47148 * 180.28037 * 12 10 9 16 16 H 1.08001 * 120.00037 * 359.97438 * 15 12 10 17 17 C 1.37875 * 120.00214 * 179.97438 * 15 12 10 18 18 N 1.31516 * 120.00297 * 179.97438 * 17 15 12 19 19 Si 1.86800 * 119.99907 * 359.97438 * 17 15 12 20 20 H 1.48502 * 109.47496 * 89.99791 * 19 17 15 21 21 H 1.48503 * 109.47098 * 209.99926 * 19 17 15 22 22 H 1.48504 * 109.46915 * 329.99781 * 19 17 15 23 23 O 1.33971 * 125.61885 * 270.00343 * 3 2 1 24 24 H 1.08999 * 109.47129 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47467 * 300.00434 * 1 2 3 26 26 H 1.09007 * 109.47247 * 60.00308 * 1 2 3 27 27 H 1.08997 * 109.47201 * 240.00030 * 2 1 3 28 28 H 1.08998 * 109.47095 * 119.99439 * 2 1 3 29 29 H 1.08994 * 109.47187 * 270.14984 * 6 5 4 30 30 H 1.09000 * 109.46639 * 30.15003 * 6 5 4 31 31 H 1.08999 * 109.46765 * 150.14562 * 6 5 4 32 32 H 1.08995 * 109.46956 * 329.70591 * 8 7 5 33 33 H 1.09001 * 109.46317 * 209.71038 * 8 7 5 34 34 H 0.97000 * 120.00580 * 0.02562 * 9 8 7 35 35 H 1.08995 * 109.47223 * 59.99497 * 14 12 10 36 36 H 1.08996 * 109.47637 * 180.02562 * 14 12 10 37 37 H 1.09004 * 109.46762 * 299.99804 * 14 12 10 38 38 H 0.97001 * 119.99846 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2847 2.1363 1.0588 5 6 2.7183 3.3475 0.6674 6 6 3.1266 4.4812 1.5726 7 6 2.7193 3.3658 -0.6758 8 6 3.1277 4.5197 -1.5550 9 7 4.5621 4.4331 -1.8395 10 6 5.1531 5.3653 -2.6130 11 8 4.4976 6.2760 -3.0730 12 6 6.6299 5.2796 -2.9006 13 1 7.1856 5.3187 -1.9636 14 6 6.9341 3.9637 -3.6194 15 6 7.0392 6.4362 -3.7758 16 1 6.3033 7.1606 -4.0924 17 6 8.3529 6.5697 -4.1723 18 7 8.7100 7.5788 -4.9365 19 14 9.6258 5.3172 -3.6241 20 1 9.6973 4.2164 -4.6183 21 1 10.9531 5.9746 -3.5172 22 1 9.2389 4.7649 -2.3010 23 8 2.2924 2.1565 -1.0891 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8901 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5137 0.8900 29 1 2.2572 5.0999 1.7948 30 1 3.5319 4.0774 2.5004 31 1 3.8861 5.0861 1.0772 32 1 2.9146 5.4587 -1.0443 33 1 2.5687 4.4795 -2.4899 34 1 5.0865 3.7044 -1.4719 35 1 6.3786 3.9246 -4.5563 36 1 8.0023 3.9015 -3.8270 37 1 6.6382 3.1271 -2.9863 38 1 9.6343 7.6728 -5.2151 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597689142.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:36 Heat of formation + Delta-G solvation = -52.693251 kcal Electronic energy + Delta-G solvation = -19981.318616 eV Core-core repulsion = 16824.215553 eV Total energy + Delta-G solvation = -3157.103063 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -44.49533 -40.70680 -36.51441 -36.21846 -35.81051 -34.88667 -33.38664 -31.86031 -29.48564 -27.14731 -26.94580 -24.91684 -23.90817 -22.61596 -21.60001 -21.22063 -18.83303 -18.35973 -17.94696 -17.30524 -16.99636 -16.43112 -16.23952 -15.76913 -15.33062 -15.01657 -14.81755 -14.43135 -14.24739 -14.20493 -14.06275 -13.69299 -13.56087 -13.40717 -13.07136 -12.81265 -12.61808 -12.55344 -12.16269 -12.07870 -11.94913 -11.65372 -11.48020 -11.22933 -10.80005 -10.64282 -10.18595 -9.70574 -8.26818 -6.34867 0.19487 1.34068 1.40247 1.44988 1.51418 1.53341 1.79009 2.34301 2.40352 2.91147 3.06844 3.50880 3.73534 3.99884 4.03947 4.20224 4.22754 4.32272 4.40950 4.47141 4.58545 4.63907 4.68948 4.74426 4.76106 4.90510 4.95192 4.99289 5.04880 5.05548 5.25981 5.32511 5.36800 5.42651 5.51350 6.24192 6.57735 6.62884 6.81851 7.25207 7.39920 8.90776 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.030979 B = 0.004059 C = 0.003935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.621335 B = 6896.083034 C = 7113.188304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.028 4.028 3 C 0.204 3.796 4 N -0.506 5.506 5 C 0.012 3.988 6 C -0.076 4.076 7 C -0.082 4.082 8 C 0.214 3.786 9 N -0.722 5.722 10 C 0.534 3.466 11 O -0.576 6.576 12 C -0.007 4.007 13 H 0.072 0.928 14 C -0.140 4.140 15 C -0.522 4.522 16 H 0.033 0.967 17 C 0.008 3.992 18 N -0.952 5.952 19 Si 0.958 3.042 20 H -0.262 1.262 21 H -0.299 1.299 22 H -0.231 1.231 23 O -0.206 6.206 24 H 0.098 0.902 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.112 0.888 28 H 0.121 0.879 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.104 0.896 33 H 0.075 0.925 34 H 0.411 0.589 35 H 0.047 0.953 36 H 0.047 0.953 37 H 0.080 0.920 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.940 -19.006 14.064 26.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.066 4.066 3 C -0.003 4.003 4 N -0.237 5.237 5 C -0.109 4.109 6 C -0.134 4.134 7 C -0.135 4.135 8 C 0.091 3.909 9 N -0.377 5.377 10 C 0.323 3.677 11 O -0.454 6.454 12 C -0.029 4.029 13 H 0.090 0.910 14 C -0.198 4.198 15 C -0.560 4.560 16 H 0.051 0.949 17 C -0.189 4.189 18 N -0.592 5.592 19 Si 0.783 3.217 20 H -0.188 1.188 21 H -0.227 1.227 22 H -0.154 1.154 23 O -0.093 6.093 24 H 0.117 0.883 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.131 0.869 28 H 0.139 0.861 29 H 0.108 0.892 30 H 0.104 0.896 31 H 0.099 0.901 32 H 0.122 0.878 33 H 0.093 0.907 34 H 0.248 0.752 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.099 0.901 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.385 -18.480 14.215 26.883 hybrid contribution 0.901 0.251 -0.911 1.306 sum -12.484 -18.229 13.304 25.790 Atomic orbital electron populations 1.21772 0.92192 1.04372 1.02090 1.20406 0.97448 0.81798 1.06904 1.27295 0.97336 0.97691 0.78009 1.70436 1.18336 1.03931 1.30948 1.21988 1.01578 0.95111 0.92199 1.20288 1.02441 0.92679 0.97947 1.22909 1.08993 0.86805 0.94756 1.19395 0.82052 0.91955 0.97510 1.46025 1.08926 1.29806 1.52920 1.21039 0.90692 0.80075 0.75935 1.90590 1.66652 1.35749 1.52446 1.19268 0.89388 0.95837 0.98385 0.90985 1.22024 1.00825 0.96012 1.00899 1.21098 0.94790 1.09430 1.30698 0.94914 1.26006 1.00611 0.97841 0.94419 1.70072 1.18739 1.32892 1.37499 0.85728 0.76660 0.78260 0.81055 1.18752 1.22728 1.15381 1.84407 1.64162 1.22461 1.38291 0.88298 0.92776 0.92912 0.86933 0.86070 0.89246 0.89647 0.90104 0.87788 0.90697 0.75236 0.93414 0.93485 0.90079 0.92373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.89 71.98 0.71 -0.72 16 2 C -0.03 -0.32 6.56 29.85 0.20 -0.12 16 3 C 0.20 4.32 7.60 88.34 0.67 4.99 16 4 N -0.51 -12.39 11.29 -291.96 -3.30 -15.69 16 5 C 0.01 0.28 7.11 41.26 0.29 0.58 16 6 C -0.08 -1.46 10.05 71.24 0.72 -0.74 16 7 C -0.08 -2.07 6.75 24.79 0.17 -1.90 16 8 C 0.21 5.92 5.83 85.64 0.50 6.42 16 9 N -0.72 -22.29 5.45 -466.79 -2.54 -24.83 16 10 C 0.53 22.73 7.15 87.66 0.63 23.36 16 11 O -0.58 -30.05 15.46 -3.04 -0.05 -30.10 16 12 C -0.01 -0.32 2.23 -12.29 -0.03 -0.35 16 13 H 0.07 3.00 7.20 -2.38 -0.02 2.98 16 14 C -0.14 -5.33 8.57 71.98 0.62 -4.71 16 15 C -0.52 -30.93 8.96 25.60 0.23 -30.70 16 16 H 0.03 2.28 7.00 -2.91 -0.02 2.26 16 17 C 0.01 0.46 5.45 84.65 0.46 0.92 16 18 N -0.95 -60.91 13.96 21.45 0.30 -60.61 16 19 Si 0.96 42.80 24.37 68.60 1.67 44.47 16 20 H -0.26 -10.97 6.87 99.48 0.68 -10.29 16 21 H -0.30 -13.52 7.11 99.48 0.71 -12.81 16 22 H -0.23 -8.90 6.53 99.48 0.65 -8.25 16 23 O -0.21 -5.11 10.78 -3.67 -0.04 -5.15 16 24 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 25 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 27 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.08 1.54 7.80 -2.39 -0.02 1.52 16 32 H 0.10 2.78 7.81 -2.39 -0.02 2.76 16 33 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.41 10.55 7.89 -92.71 -0.73 9.82 16 35 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.05 1.82 3.28 -2.39 -0.01 1.81 16 37 H 0.08 2.29 7.57 -2.38 -0.02 2.27 16 38 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 Total: -1.00 -78.62 318.07 1.47 -77.15 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: 0.26 Total: 17.76 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: 5.16 Total: -3.01 kcal Atomic # 7 Polarization: -95.59 SS G_CDS: -5.54 Total: -101.13 kcal Atomic # 8 Polarization: -35.16 SS G_CDS: -0.09 Total: -35.25 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 1.67 Total: 44.47 kcal Total: -78.62 1.47 -77.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597689142.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.461 kcal (2) G-P(sol) polarization free energy of solvation -78.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds