Wall clock time and date at job start Mon Mar 30 2020 05:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50707 * 109.46748 * 2 1 4 4 N 1.30167 * 126.80189 * 270.02223 * 3 2 1 5 5 O 1.20924 * 111.60615 * 179.97438 * 4 3 2 6 6 C 1.34039 * 111.56325 * 359.76555 * 5 4 3 7 7 C 1.50705 * 126.77682 * 180.28410 * 6 5 4 8 8 C 1.35455 * 106.44780 * 0.37970 * 6 5 4 9 9 C 1.50696 * 128.00674 * 179.91071 * 8 6 5 10 10 N 1.46498 * 109.47362 * 269.67818 * 9 8 6 11 11 C 1.34780 * 120.00328 * 180.02562 * 10 9 8 12 12 O 1.21279 * 119.99828 * 0.02562 * 11 10 9 13 13 C 1.50693 * 119.99868 * 180.02562 * 11 10 9 14 14 H 1.08995 * 109.47566 * 60.00144 * 13 11 10 15 15 C 1.53009 * 109.47367 * 299.99746 * 13 11 10 16 16 C 1.50706 * 109.46836 * 180.02562 * 13 11 10 17 17 H 1.08003 * 120.00044 * 5.64770 * 16 13 11 18 18 C 1.37880 * 119.99750 * 185.64299 * 16 13 11 19 19 N 1.31520 * 119.99383 * 197.12748 * 18 16 13 20 20 Si 1.86797 * 120.00370 * 17.40180 * 18 16 13 21 21 H 1.48499 * 109.47424 * 179.72236 * 20 18 16 22 22 H 1.48497 * 109.46923 * 299.72659 * 20 18 16 23 23 H 1.48505 * 109.46879 * 59.72147 * 20 18 16 24 24 H 1.08996 * 109.47550 * 59.99928 * 1 2 3 25 25 H 1.09004 * 109.47218 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47257 * 299.99406 * 1 2 3 27 27 H 1.08995 * 109.47216 * 240.00187 * 2 1 3 28 28 H 1.08996 * 109.47550 * 120.00072 * 2 1 3 29 29 H 1.09000 * 109.46857 * 270.10994 * 7 6 5 30 30 H 1.09004 * 109.46648 * 30.11366 * 7 6 5 31 31 H 1.09002 * 109.46847 * 150.11277 * 7 6 5 32 32 H 1.09000 * 109.47289 * 149.67666 * 9 8 6 33 33 H 1.09003 * 109.47089 * 29.67816 * 9 8 6 34 34 H 0.97008 * 119.99932 * 0.02562 * 10 9 8 35 35 H 1.08995 * 109.46740 * 306.35071 * 15 13 11 36 36 H 1.08995 * 109.46393 * 66.34678 * 15 13 11 37 37 H 1.09001 * 109.47252 * 186.35195 * 15 13 11 38 38 H 0.96993 * 120.00300 * 355.24114 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 2.2917 2.1562 -1.0423 5 8 2.6803 3.2566 -0.7253 6 6 2.7251 3.3984 0.6068 7 6 3.1508 4.6265 1.3696 8 6 2.3144 2.2194 1.1321 9 6 2.1825 1.8472 2.5864 10 7 3.4419 1.2660 3.0580 11 6 3.5579 0.8562 4.3367 12 8 2.6196 0.9680 5.0968 13 6 4.8536 0.2590 4.8218 14 1 5.6558 0.9876 4.7051 15 6 5.1773 -0.9918 4.0020 16 6 4.7212 -0.1145 6.2758 17 1 3.7665 -0.0224 6.7723 18 6 5.8190 -0.5739 6.9723 19 7 5.6557 -1.2098 8.1119 20 14 7.5383 -0.2865 6.3011 21 1 8.5373 -0.8675 7.2336 22 1 7.6657 -0.9359 4.9717 23 1 7.7787 1.1726 6.1643 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5137 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 4.2240 4.5851 1.5552 30 1 2.9170 5.5164 0.7851 31 1 2.6189 4.6662 2.3203 32 1 1.3799 1.1190 2.7038 33 1 1.9526 2.7385 3.1701 34 1 4.1923 1.1762 2.4499 35 1 4.3268 -1.6729 4.0274 36 1 5.3837 -0.7065 2.9705 37 1 6.0519 -1.4867 4.4242 38 1 4.7695 -1.2953 8.4969 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597696978.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:14 Heat of formation + Delta-G solvation = 2.024073 kcal Electronic energy + Delta-G solvation = -20345.246251 eV Core-core repulsion = 17190.515910 eV Total energy + Delta-G solvation = -3154.730342 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -45.09013 -39.01061 -36.24515 -34.60277 -33.79151 -33.02787 -31.48264 -31.05067 -28.40631 -26.58323 -24.83681 -24.48362 -22.50492 -21.38064 -20.07384 -19.42718 -17.78451 -17.44780 -17.10627 -16.08024 -15.43391 -15.16078 -14.64480 -14.37520 -13.96745 -13.69099 -13.51835 -13.34057 -13.09984 -12.82997 -12.78091 -12.37361 -12.31504 -11.84388 -11.74220 -11.59612 -11.52164 -11.05609 -10.93075 -10.53223 -10.21983 -10.09589 -9.81544 -9.48141 -8.87881 -8.73146 -8.64007 -8.17979 -6.45620 -4.03514 1.25606 1.97343 2.91565 3.33050 3.39089 3.52555 3.58526 3.87768 4.00955 4.25629 4.47545 4.65700 4.74987 4.93538 5.06955 5.13487 5.18358 5.27244 5.28020 5.36591 5.55792 5.66597 5.68499 5.81384 5.86209 5.87312 5.97565 6.06822 6.17821 6.40225 6.50804 6.84643 6.90037 7.21858 7.78231 8.12067 8.22730 8.47531 9.03691 9.06895 9.65575 10.96468 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.024838 B = 0.004779 C = 0.004526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.051295 B = 5857.789177 C = 6184.439675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.050 4.050 3 C 0.040 3.960 4 N -0.368 5.368 5 O 0.094 5.906 6 C -0.012 4.012 7 C -0.077 4.077 8 C -0.216 4.216 9 C 0.200 3.800 10 N -0.744 5.744 11 C 0.528 3.472 12 O -0.535 6.535 13 C 0.003 3.997 14 H 0.044 0.956 15 C -0.144 4.144 16 C -0.589 4.589 17 H 0.074 0.926 18 C 0.029 3.971 19 N -0.905 5.905 20 Si 1.044 2.956 21 H -0.284 1.284 22 H -0.274 1.274 23 H -0.283 1.283 24 H 0.055 0.945 25 H 0.066 0.934 26 H 0.059 0.941 27 H 0.081 0.919 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.396 0.604 35 H 0.047 0.953 36 H 0.025 0.975 37 H 0.064 0.936 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.042 8.019 -17.740 20.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.088 4.088 3 C -0.120 4.120 4 N -0.074 5.074 5 O 0.031 5.969 6 C -0.077 4.077 7 C -0.134 4.134 8 C -0.220 4.220 9 C 0.076 3.924 10 N -0.399 5.399 11 C 0.317 3.683 12 O -0.410 6.410 13 C -0.019 4.019 14 H 0.061 0.939 15 C -0.202 4.202 16 C -0.627 4.627 17 H 0.093 0.907 18 C -0.176 4.176 19 N -0.539 5.539 20 Si 0.872 3.128 21 H -0.210 1.210 22 H -0.201 1.201 23 H -0.210 1.210 24 H 0.074 0.926 25 H 0.085 0.915 26 H 0.078 0.922 27 H 0.100 0.900 28 H 0.109 0.891 29 H 0.110 0.890 30 H 0.102 0.898 31 H 0.113 0.887 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.229 0.771 35 H 0.066 0.934 36 H 0.044 0.956 37 H 0.083 0.917 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.210 7.582 -18.179 20.142 hybrid contribution -1.337 0.256 0.103 1.365 sum -5.547 7.838 -18.076 20.468 Atomic orbital electron populations 1.21713 0.93833 1.02476 1.02322 1.19992 0.96538 0.88094 1.04149 1.23465 1.01159 0.99111 0.88248 1.73837 1.16990 0.92721 1.23838 1.84813 1.62717 1.26907 1.22447 1.24374 1.00807 0.98709 0.83783 1.20416 1.03125 0.91198 0.98679 1.21055 1.09558 0.93921 0.97483 1.19256 0.88496 0.98915 0.85714 1.46383 1.14675 1.65932 1.12947 1.21489 0.91471 0.75782 0.79570 1.90567 1.41163 1.54444 1.54785 1.19195 0.90301 0.93862 0.98527 0.93851 1.22183 1.02077 0.99333 0.96614 1.21945 0.99196 1.48655 0.92889 0.90744 1.25752 1.03587 0.92344 0.95902 1.70829 1.26866 1.35334 1.20898 0.84069 0.75960 0.76794 0.75965 1.21008 1.20097 1.20988 0.92583 0.91482 0.92159 0.90043 0.89116 0.88970 0.89774 0.88731 0.90746 0.90778 0.77085 0.93355 0.95580 0.91704 0.92057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.89 37.16 0.37 -1.01 16 2 C -0.05 -0.53 6.44 -27.88 -0.18 -0.71 16 3 C 0.04 0.50 6.58 -82.10 -0.54 -0.04 16 4 N -0.37 -4.92 12.07 33.42 0.40 -4.52 16 5 O 0.09 1.15 11.20 17.18 0.19 1.35 16 6 C -0.01 -0.13 7.49 -35.30 -0.26 -0.40 16 7 C -0.08 -0.58 10.30 36.01 0.37 -0.21 16 8 C -0.22 -2.63 5.69 -104.42 -0.59 -3.22 16 9 C 0.20 2.77 6.00 -5.20 -0.03 2.74 16 10 N -0.74 -11.88 5.45 -61.48 -0.34 -12.22 16 11 C 0.53 11.34 7.15 -10.99 -0.08 11.26 16 12 O -0.54 -13.61 15.47 5.56 0.09 -13.53 16 13 C 0.00 0.07 2.22 -92.92 -0.21 -0.14 16 14 H 0.04 0.96 6.80 -51.93 -0.35 0.60 16 15 C -0.14 -2.95 8.72 37.16 0.32 -2.62 16 16 C -0.59 -16.79 8.63 -34.44 -0.30 -17.09 16 17 H 0.07 2.41 7.02 -52.48 -0.37 2.04 16 18 C 0.03 0.83 5.29 -17.82 -0.09 0.74 16 19 N -0.91 -27.88 13.70 55.43 0.76 -27.12 16 20 Si 1.04 24.24 26.29 -169.99 -4.47 19.77 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 22 H -0.27 -5.73 5.76 56.52 0.33 -5.40 16 23 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 24 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 29 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.09 0.70 7.43 -51.93 -0.39 0.31 16 32 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.07 1.02 7.44 -51.93 -0.39 0.63 16 34 H 0.40 5.54 8.01 -40.82 -0.33 5.21 16 35 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.03 0.42 7.75 -51.93 -0.40 0.02 16 37 H 0.06 1.39 4.88 -51.93 -0.25 1.14 16 38 H 0.27 8.38 8.73 -40.82 -0.36 8.02 16 LS Contribution 319.86 15.07 4.82 4.82 Total: -1.00 -33.58 319.86 -5.27 -38.85 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -5.51 Total: 3.29 kcal Atomic # 6 Polarization: -9.48 SS G_CDS: -1.22 Total: -10.70 kcal Atomic # 7 Polarization: -44.69 SS G_CDS: 0.83 Total: -43.86 kcal Atomic # 8 Polarization: -12.46 SS G_CDS: 0.28 Total: -12.18 kcal Atomic # 14 Polarization: 24.24 SS G_CDS: -4.47 Total: 19.77 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -33.58 -5.27 -38.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597696978.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.877 kcal (2) G-P(sol) polarization free energy of solvation -33.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds