Wall clock time and date at job start Mon Mar 30 2020 05:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50707 * 109.46748 * 2 1 4 4 N 1.30167 * 126.80189 * 270.02223 * 3 2 1 5 5 O 1.20924 * 111.60615 * 179.97438 * 4 3 2 6 6 C 1.34039 * 111.56325 * 359.76555 * 5 4 3 7 7 C 1.50705 * 126.77682 * 180.28410 * 6 5 4 8 8 C 1.35455 * 106.44780 * 0.37970 * 6 5 4 9 9 C 1.50696 * 128.00674 * 179.91071 * 8 6 5 10 10 N 1.46498 * 109.47362 * 269.67818 * 9 8 6 11 11 C 1.34780 * 120.00328 * 180.02562 * 10 9 8 12 12 O 1.21279 * 119.99828 * 0.02562 * 11 10 9 13 13 C 1.50693 * 119.99868 * 180.02562 * 11 10 9 14 14 H 1.08995 * 109.47566 * 60.00144 * 13 11 10 15 15 C 1.53009 * 109.47367 * 299.99746 * 13 11 10 16 16 C 1.50706 * 109.46836 * 180.02562 * 13 11 10 17 17 H 1.08003 * 120.00044 * 5.64770 * 16 13 11 18 18 C 1.37880 * 119.99750 * 185.64299 * 16 13 11 19 19 N 1.31520 * 119.99383 * 197.12748 * 18 16 13 20 20 Si 1.86797 * 120.00370 * 17.40180 * 18 16 13 21 21 H 1.48499 * 109.47424 * 179.72236 * 20 18 16 22 22 H 1.48497 * 109.46923 * 299.72659 * 20 18 16 23 23 H 1.48505 * 109.46879 * 59.72147 * 20 18 16 24 24 H 1.08996 * 109.47550 * 59.99928 * 1 2 3 25 25 H 1.09004 * 109.47218 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47257 * 299.99406 * 1 2 3 27 27 H 1.08995 * 109.47216 * 240.00187 * 2 1 3 28 28 H 1.08996 * 109.47550 * 120.00072 * 2 1 3 29 29 H 1.09000 * 109.46857 * 270.10994 * 7 6 5 30 30 H 1.09004 * 109.46648 * 30.11366 * 7 6 5 31 31 H 1.09002 * 109.46847 * 150.11277 * 7 6 5 32 32 H 1.09000 * 109.47289 * 149.67666 * 9 8 6 33 33 H 1.09003 * 109.47089 * 29.67816 * 9 8 6 34 34 H 0.97008 * 119.99932 * 0.02562 * 10 9 8 35 35 H 1.08995 * 109.46740 * 306.35071 * 15 13 11 36 36 H 1.08995 * 109.46393 * 66.34678 * 15 13 11 37 37 H 1.09001 * 109.47252 * 186.35195 * 15 13 11 38 38 H 0.96993 * 120.00300 * 355.24114 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 2.2917 2.1562 -1.0423 5 8 2.6803 3.2566 -0.7253 6 6 2.7251 3.3984 0.6068 7 6 3.1508 4.6265 1.3696 8 6 2.3144 2.2194 1.1321 9 6 2.1825 1.8472 2.5864 10 7 3.4419 1.2660 3.0580 11 6 3.5579 0.8562 4.3367 12 8 2.6196 0.9680 5.0968 13 6 4.8536 0.2590 4.8218 14 1 5.6558 0.9876 4.7051 15 6 5.1773 -0.9918 4.0020 16 6 4.7212 -0.1145 6.2758 17 1 3.7665 -0.0224 6.7723 18 6 5.8190 -0.5739 6.9723 19 7 5.6557 -1.2098 8.1119 20 14 7.5383 -0.2865 6.3011 21 1 8.5373 -0.8675 7.2336 22 1 7.6657 -0.9359 4.9717 23 1 7.7787 1.1726 6.1643 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5137 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 4.2240 4.5851 1.5552 30 1 2.9170 5.5164 0.7851 31 1 2.6189 4.6662 2.3203 32 1 1.3799 1.1190 2.7038 33 1 1.9526 2.7385 3.1701 34 1 4.1923 1.1762 2.4499 35 1 4.3268 -1.6729 4.0274 36 1 5.3837 -0.7065 2.9705 37 1 6.0519 -1.4867 4.4242 38 1 4.7695 -1.2953 8.4969 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597696978.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:14 Heat of formation + Delta-G solvation = -21.923330 kcal Electronic energy + Delta-G solvation = -20346.284689 eV Core-core repulsion = 17190.515910 eV Total energy + Delta-G solvation = -3155.768779 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -46.02749 -40.66685 -37.33350 -35.79911 -35.65052 -34.22859 -33.04389 -32.28242 -29.34164 -27.66223 -26.77787 -25.34937 -24.16832 -22.50305 -21.11886 -20.92384 -19.50363 -18.73030 -18.25603 -17.60316 -16.92426 -16.31191 -15.77128 -15.65219 -15.36943 -15.04800 -14.69431 -14.36751 -14.19877 -13.97288 -13.92260 -13.66032 -13.53540 -13.36956 -13.14503 -12.88283 -12.55566 -12.42494 -12.33563 -11.94275 -11.80561 -11.57971 -11.11963 -10.96404 -10.66723 -10.38440 -10.15167 -10.06534 -8.74927 -6.33785 0.36745 1.00766 1.50308 1.60242 1.76775 1.85621 2.06539 2.51765 2.55922 3.07050 3.11415 3.40869 3.68877 3.84763 4.14739 4.15682 4.27248 4.34819 4.47480 4.48433 4.56526 4.63732 4.69682 4.70802 4.81885 4.86535 4.92559 4.94455 5.04807 5.16884 5.18101 5.24078 5.45902 5.53793 5.87280 6.08478 6.63844 6.70527 7.21905 7.41308 7.50020 8.65988 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.024838 B = 0.004779 C = 0.004526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.051295 B = 5857.789177 C = 6184.439675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.051 4.051 3 C 0.038 3.962 4 N -0.389 5.389 5 O 0.090 5.910 6 C 0.008 3.992 7 C -0.080 4.080 8 C -0.233 4.233 9 C 0.207 3.793 10 N -0.718 5.718 11 C 0.529 3.471 12 O -0.586 6.586 13 C -0.004 4.004 14 H 0.069 0.931 15 C -0.138 4.138 16 C -0.597 4.597 17 H 0.015 0.985 18 C -0.025 4.025 19 N -0.940 5.940 20 Si 1.087 2.913 21 H -0.294 1.294 22 H -0.228 1.228 23 H -0.259 1.259 24 H 0.054 0.946 25 H 0.080 0.920 26 H 0.052 0.948 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.096 0.904 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.410 0.590 35 H 0.034 0.966 36 H 0.076 0.924 37 H 0.058 0.942 38 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.373 9.205 -20.729 22.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.089 4.089 3 C -0.122 4.122 4 N -0.097 5.097 5 O 0.029 5.971 6 C -0.057 4.057 7 C -0.137 4.137 8 C -0.237 4.237 9 C 0.083 3.917 10 N -0.372 5.372 11 C 0.318 3.682 12 O -0.465 6.465 13 C -0.026 4.026 14 H 0.086 0.914 15 C -0.196 4.196 16 C -0.635 4.635 17 H 0.034 0.966 18 C -0.221 4.221 19 N -0.576 5.576 20 Si 0.906 3.094 21 H -0.220 1.220 22 H -0.151 1.151 23 H -0.183 1.183 24 H 0.073 0.927 25 H 0.099 0.901 26 H 0.071 0.929 27 H 0.107 0.893 28 H 0.105 0.895 29 H 0.124 0.876 30 H 0.125 0.875 31 H 0.115 0.885 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.247 0.753 35 H 0.053 0.947 36 H 0.095 0.905 37 H 0.077 0.923 38 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -2.559 8.794 -21.249 23.139 hybrid contribution -1.977 -0.048 1.025 2.228 sum -4.536 8.746 -20.224 22.496 Atomic orbital electron populations 1.21689 0.93096 1.03319 1.01891 1.20064 0.97180 0.87356 1.04324 1.23736 1.00584 0.99691 0.88167 1.73842 1.18184 0.93262 1.24371 1.84804 1.62663 1.26594 1.23020 1.24910 0.98402 0.99084 0.83307 1.20641 1.03861 0.90575 0.98595 1.20806 1.11797 0.94854 0.96272 1.19199 0.86936 0.98641 0.86893 1.46026 1.16009 1.64032 1.11116 1.21189 0.90359 0.75767 0.80882 1.90560 1.42538 1.56795 1.56652 1.19182 0.92041 0.95901 0.95477 0.91353 1.22057 1.01221 0.97386 0.98893 1.22051 0.96792 1.48506 0.96196 0.96635 1.27488 1.08388 0.91050 0.95200 1.70992 1.25382 1.38364 1.22833 0.83612 0.69898 0.78530 0.77387 1.22008 1.15122 1.18337 0.92658 0.90060 0.92878 0.89250 0.89467 0.87589 0.87497 0.88501 0.91550 0.90440 0.75342 0.94698 0.90536 0.92312 0.94412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 9.89 71.98 0.71 -1.80 16 2 C -0.05 -1.01 6.44 29.85 0.19 -0.82 16 3 C 0.04 0.87 6.58 43.58 0.29 1.16 16 4 N -0.39 -9.63 12.07 -49.56 -0.60 -10.23 16 5 O 0.09 1.99 11.20 71.64 0.80 2.79 16 6 C 0.01 0.14 7.49 25.04 0.19 0.33 16 7 C -0.08 -0.92 10.30 71.24 0.73 -0.19 16 8 C -0.23 -5.14 5.69 -19.74 -0.11 -5.25 16 9 C 0.21 5.39 6.00 85.63 0.51 5.91 16 10 N -0.72 -21.23 5.45 -466.80 -2.55 -23.78 16 11 C 0.53 22.28 7.15 87.65 0.63 22.90 16 12 O -0.59 -30.60 15.47 -3.03 -0.05 -30.65 16 13 C 0.00 -0.19 2.22 -12.28 -0.03 -0.21 16 14 H 0.07 2.74 6.80 -2.39 -0.02 2.72 16 15 C -0.14 -5.20 8.72 71.99 0.63 -4.57 16 16 C -0.60 -34.90 8.63 25.60 0.22 -34.68 16 17 H 0.02 1.06 7.02 -2.91 -0.02 1.04 16 18 C -0.02 -1.43 5.29 84.65 0.45 -0.98 16 19 N -0.94 -60.08 13.70 21.45 0.29 -59.79 16 20 Si 1.09 46.83 26.29 68.60 1.80 48.64 16 21 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 22 H -0.23 -8.12 5.76 99.48 0.57 -7.55 16 23 H -0.26 -10.08 7.11 99.48 0.71 -9.38 16 24 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 26 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.10 1.14 7.43 -2.39 -0.02 1.12 16 32 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.08 2.01 7.44 -2.39 -0.02 2.00 16 34 H 0.41 9.88 8.01 -92.70 -0.74 9.13 16 35 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.08 2.12 7.75 -2.39 -0.02 2.10 16 37 H 0.06 2.29 4.88 -2.39 -0.01 2.28 16 38 H 0.25 16.39 8.73 -92.71 -0.81 15.58 16 Total: -1.00 -77.39 319.86 4.28 -73.11 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: 0.16 Total: 18.10 kcal Atomic # 6 Polarization: -22.60 SS G_CDS: 4.41 Total: -18.19 kcal Atomic # 7 Polarization: -90.94 SS G_CDS: -2.85 Total: -93.79 kcal Atomic # 8 Polarization: -28.61 SS G_CDS: 0.76 Total: -27.86 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 1.80 Total: 48.64 kcal Total: -77.39 4.28 -73.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597696978.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.189 kcal (2) G-P(sol) polarization free energy of solvation -77.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds