Wall clock time and date at job start Mon Mar 30 2020 05:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 109.47282 * 2 1 4 4 N 1.30176 * 126.80213 * 84.82158 * 3 2 1 5 5 O 1.20921 * 111.60362 * 180.02562 * 4 3 2 6 6 C 1.34044 * 111.56802 * 0.02562 * 5 4 3 7 7 C 1.35446 * 106.44311 * 0.24162 * 6 5 4 8 8 C 1.50700 * 128.00586 * 179.73642 * 7 6 5 9 9 N 1.46508 * 109.47158 * 5.31129 * 8 7 6 10 10 C 1.46497 * 119.99755 * 268.36621 * 9 8 7 11 11 C 1.34778 * 120.00009 * 88.36133 * 9 8 7 12 12 O 1.21283 * 119.99755 * 359.97438 * 11 9 8 13 13 C 1.50695 * 120.00003 * 180.02562 * 11 9 8 14 14 H 1.09002 * 109.46870 * 299.99463 * 13 11 9 15 15 C 1.52995 * 109.47201 * 60.00025 * 13 11 9 16 16 C 1.50706 * 109.47146 * 180.02562 * 13 11 9 17 17 H 1.07995 * 119.99710 * 359.97438 * 16 13 11 18 18 C 1.37875 * 120.00116 * 179.97438 * 16 13 11 19 19 N 1.31518 * 119.99815 * 0.02562 * 18 16 13 20 20 Si 1.86797 * 120.00118 * 179.97438 * 18 16 13 21 21 H 1.48502 * 109.46982 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47068 * 120.00041 * 20 18 16 23 23 H 1.48491 * 109.47222 * 240.00064 * 20 18 16 24 24 H 1.09003 * 109.47040 * 304.52902 * 1 2 3 25 25 H 1.08993 * 109.47222 * 64.53236 * 1 2 3 26 26 H 1.08998 * 109.47089 * 184.53096 * 1 2 3 27 27 H 1.09003 * 109.47296 * 239.99574 * 2 1 3 28 28 H 1.09005 * 109.47375 * 119.99794 * 2 1 3 29 29 H 1.07997 * 126.77490 * 179.97438 * 6 5 4 30 30 H 1.09004 * 109.47458 * 125.30958 * 8 7 6 31 31 H 1.08996 * 109.47774 * 245.31401 * 8 7 6 32 32 H 1.09003 * 109.47422 * 87.64994 * 10 9 8 33 33 H 1.09004 * 109.46540 * 207.64732 * 10 9 8 34 34 H 1.09001 * 109.47242 * 327.64348 * 10 9 8 35 35 H 1.09004 * 109.47253 * 60.00254 * 15 13 11 36 36 H 1.09006 * 109.47200 * 179.97438 * 15 13 11 37 37 H 1.08999 * 109.47139 * 300.00237 * 15 13 11 38 38 H 0.97000 * 119.99715 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2036 2.1874 1.0381 5 8 2.6191 3.2782 0.7223 6 6 2.7811 3.3786 -0.6045 7 6 2.4044 2.1876 -1.1280 8 6 2.3883 1.7744 -2.5772 9 7 2.9771 2.8379 -3.3948 10 6 2.1211 3.8777 -3.9711 11 6 4.3064 2.8598 -3.6167 12 8 5.0151 1.9992 -3.1390 13 6 4.9121 3.9541 -4.4572 14 1 4.4787 3.9263 -5.4570 15 6 4.6225 5.3113 -3.8132 16 6 6.4022 3.7494 -4.5505 17 1 6.8644 2.9110 -4.0506 18 6 7.1755 4.6325 -5.2738 19 7 6.6126 5.6537 -5.8821 20 14 9.0226 4.3792 -5.3888 21 1 9.4047 3.1667 -4.6213 22 1 9.4110 4.2066 -6.8117 23 1 9.7205 5.5626 -4.8253 24 1 -0.3633 0.5825 0.8467 25 1 -0.3633 0.4419 -0.9277 26 1 -0.3633 -1.0244 0.0812 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.1372 4.2406 -1.1490 30 1 2.9669 0.8588 -2.7005 31 1 1.3601 1.5997 -2.8939 32 1 2.0060 4.6917 -3.2554 33 1 2.5776 4.2590 -4.8846 34 1 1.1429 3.4561 -4.2024 35 1 5.0560 5.3391 -2.8135 36 1 5.0610 6.1029 -4.4210 37 1 3.5446 5.4591 -3.7461 38 1 7.1566 6.2748 -6.3913 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597697975.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:26 Heat of formation + Delta-G solvation = 2.834470 kcal Electronic energy + Delta-G solvation = -20747.648178 eV Core-core repulsion = 17592.952977 eV Total energy + Delta-G solvation = -3154.695200 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -45.91074 -40.85591 -37.22391 -36.18054 -35.77675 -33.45840 -32.20679 -31.99246 -28.84586 -27.32855 -27.03950 -25.38588 -24.16260 -22.53145 -21.78676 -20.07187 -18.66926 -18.43580 -18.35518 -17.50704 -16.99939 -16.38949 -16.20297 -15.73220 -15.16510 -14.82203 -14.66446 -14.43173 -14.20216 -13.76425 -13.65172 -13.45320 -13.36691 -12.95026 -12.85928 -12.67118 -12.62500 -12.43987 -12.19619 -12.13179 -12.02015 -11.83284 -10.98258 -10.86462 -10.59195 -10.33314 -10.23686 -9.67320 -8.14405 -6.23646 0.50880 1.22332 1.38287 1.41254 1.53671 1.88297 2.13067 2.31555 2.46443 3.15432 3.19178 3.59023 3.98662 4.03481 4.12749 4.32623 4.36752 4.43078 4.46880 4.52693 4.71363 4.74924 4.78258 4.81718 4.97129 5.00329 5.03778 5.09197 5.11817 5.12855 5.33808 5.52129 5.68656 5.77888 5.97408 6.23989 6.57076 6.84865 7.24633 7.41302 7.50867 8.91096 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.030267 B = 0.004812 C = 0.004730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.884524 B = 5817.544554 C = 5918.440681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.049 4.049 3 C 0.028 3.972 4 N -0.393 5.393 5 O 0.079 5.921 6 C -0.048 4.048 7 C -0.215 4.215 8 C 0.195 3.805 9 N -0.620 5.620 10 C 0.073 3.927 11 C 0.521 3.479 12 O -0.583 6.583 13 C 0.028 3.972 14 H 0.043 0.957 15 C -0.131 4.131 16 C -0.528 4.528 17 H 0.044 0.956 18 C 0.023 3.977 19 N -0.908 5.908 20 Si 0.949 3.051 21 H -0.283 1.283 22 H -0.274 1.274 23 H -0.275 1.275 24 H 0.045 0.955 25 H 0.065 0.935 26 H 0.085 0.915 27 H 0.098 0.902 28 H 0.081 0.919 29 H 0.217 0.783 30 H 0.078 0.922 31 H 0.130 0.870 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.099 0.901 35 H 0.019 0.981 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.588 -5.041 5.975 17.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.087 4.087 3 C -0.132 4.132 4 N -0.102 5.102 5 O 0.018 5.982 6 C -0.129 4.129 7 C -0.220 4.220 8 C 0.072 3.928 9 N -0.354 5.354 10 C -0.068 4.068 11 C 0.312 3.688 12 O -0.462 6.462 13 C 0.007 3.993 14 H 0.061 0.939 15 C -0.189 4.189 16 C -0.566 4.566 17 H 0.062 0.938 18 C -0.176 4.176 19 N -0.547 5.547 20 Si 0.775 3.225 21 H -0.208 1.208 22 H -0.199 1.199 23 H -0.201 1.201 24 H 0.064 0.936 25 H 0.084 0.916 26 H 0.104 0.896 27 H 0.117 0.883 28 H 0.099 0.901 29 H 0.234 0.766 30 H 0.096 0.904 31 H 0.148 0.852 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.118 0.882 35 H 0.038 0.962 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -15.347 -5.458 7.415 17.897 hybrid contribution 1.556 0.126 -0.906 1.805 sum -13.792 -5.332 6.509 16.156 Atomic orbital electron populations 1.21679 0.92254 1.03393 1.02254 1.20130 0.97701 0.86303 1.04532 1.23910 1.01397 1.00124 0.87743 1.73761 1.17824 0.93405 1.25170 1.84753 1.62025 1.27452 1.23978 1.25916 1.02157 1.01920 0.82946 1.21945 1.06881 0.94354 0.98809 1.19655 1.00500 0.90316 0.82323 1.47974 1.06654 1.29076 1.51655 1.22196 0.95067 0.90479 0.99087 1.21676 0.81428 0.86131 0.79544 1.90525 1.61743 1.41217 1.52745 1.18756 0.95050 0.91173 0.94281 0.93885 1.21832 1.00094 0.98356 0.98609 1.21323 0.92910 1.10791 1.31607 0.93790 1.25504 1.02279 0.94866 0.94982 1.69939 1.36495 1.14706 1.33580 0.85643 0.81102 0.77811 0.77929 1.20777 1.19929 1.20052 0.93630 0.91554 0.89624 0.88316 0.90088 0.76622 0.90365 0.85247 0.91315 0.90865 0.88216 0.96223 0.91364 0.91160 0.92655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.89 71.98 0.71 -1.31 16 2 C -0.05 -0.94 6.45 29.85 0.19 -0.75 16 3 C 0.03 0.77 6.58 43.58 0.29 1.05 16 4 N -0.39 -12.22 12.07 -49.56 -0.60 -12.82 16 5 O 0.08 2.45 11.20 71.59 0.80 3.25 16 6 C -0.05 -1.40 11.66 67.17 0.78 -0.62 16 7 C -0.21 -5.98 6.25 -19.74 -0.12 -6.10 16 8 C 0.20 5.04 5.90 85.63 0.51 5.54 16 9 N -0.62 -19.01 2.30 -851.11 -1.96 -20.96 16 10 C 0.07 1.64 8.84 127.77 1.13 2.77 16 11 C 0.52 22.63 7.06 87.66 0.62 23.25 16 12 O -0.58 -30.29 15.07 -3.04 -0.05 -30.33 16 13 C 0.03 1.36 1.83 -12.29 -0.02 1.34 16 14 H 0.04 2.14 7.41 -2.39 -0.02 2.12 16 15 C -0.13 -5.57 8.59 71.98 0.62 -4.95 16 16 C -0.53 -30.05 8.37 25.60 0.21 -29.84 16 17 H 0.04 2.72 6.75 -2.91 -0.02 2.70 16 18 C 0.02 1.27 5.30 84.65 0.45 1.72 16 19 N -0.91 -49.73 11.32 21.45 0.24 -49.48 16 20 Si 0.95 44.64 29.54 68.60 2.03 46.67 16 21 H -0.28 -13.71 7.11 99.48 0.71 -13.00 16 22 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 23 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 24 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.07 0.87 8.14 -2.39 -0.02 0.86 16 26 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.10 1.68 8.09 -2.39 -0.02 1.66 16 28 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 29 H 0.22 5.85 7.96 -2.91 -0.02 5.83 16 30 H 0.08 2.32 7.47 -2.38 -0.02 2.30 16 31 H 0.13 2.21 7.89 -2.39 -0.02 2.19 16 32 H 0.07 1.35 7.10 -2.39 -0.02 1.34 16 33 H 0.07 1.89 5.83 -2.38 -0.01 1.88 16 34 H 0.10 1.49 7.91 -2.39 -0.02 1.47 16 35 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.07 3.27 6.07 -2.38 -0.01 3.26 16 37 H 0.07 2.28 4.57 -2.39 -0.01 2.27 16 38 H 0.26 13.72 8.31 -92.71 -0.77 12.95 16 Total: -1.00 -70.09 315.63 6.90 -63.19 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: 1.06 Total: 8.39 kcal Atomic # 6 Polarization: -13.27 SS G_CDS: 5.36 Total: -7.90 kcal Atomic # 7 Polarization: -80.95 SS G_CDS: -2.31 Total: -83.26 kcal Atomic # 8 Polarization: -27.84 SS G_CDS: 0.76 Total: -27.08 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -70.09 6.90 -63.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597697975.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.025 kcal (2) G-P(sol) polarization free energy of solvation -70.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds