Wall clock time and date at job start Mon Mar 30 2020 04:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00196 * 2 1 4 4 H 1.48497 * 109.47123 * 239.99676 * 3 2 1 5 5 H 1.48494 * 109.47303 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47322 * 119.99946 * 3 2 1 7 7 C 1.37878 * 119.99868 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00106 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99900 * 0.02562 * 7 2 1 10 10 H 1.08994 * 109.49495 * 300.05925 * 9 7 2 11 11 C 1.53034 * 109.52573 * 60.14536 * 9 7 2 12 12 C 1.53346 * 109.61010 * 181.34079 * 11 9 7 13 13 C 1.53195 * 109.14901 * 298.71225 * 12 11 9 14 14 N 1.46919 * 108.89273 * 54.57640 * 13 12 11 15 15 C 1.34780 * 120.63395 * 126.29715 * 14 13 12 16 16 O 1.21281 * 120.00120 * 180.02562 * 15 14 13 17 17 C 1.50700 * 119.99750 * 0.02562 * 15 14 13 18 18 H 1.09004 * 110.85790 * 59.29487 * 17 15 14 19 19 C 1.54478 * 110.97133 * 295.50774 * 17 15 14 20 20 N 1.46817 * 105.44782 * 216.48984 * 19 17 15 21 21 C 1.34425 * 111.31158 * 16.96557 * 20 19 17 22 22 O 1.21283 * 124.93969 * 179.65803 * 21 20 19 23 23 C 1.51282 * 110.11695 * 359.62167 * 21 20 19 24 24 C 1.46933 * 118.74003 * 306.32349 * 14 13 12 25 25 H 0.97006 * 119.99699 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.45836 * 301.35501 * 11 9 7 27 27 H 1.09000 * 109.46169 * 61.30870 * 11 9 7 28 28 H 1.08997 * 109.68637 * 178.74435 * 12 11 9 29 29 H 1.09002 * 109.47277 * 58.54691 * 12 11 9 30 30 H 1.09002 * 109.58720 * 294.71670 * 13 12 11 31 31 H 1.08996 * 109.58651 * 174.43567 * 13 12 11 32 32 H 1.09001 * 110.24617 * 335.46824 * 19 17 15 33 33 H 1.08998 * 110.24575 * 97.46229 * 19 17 15 34 34 H 0.96998 * 124.33782 * 196.99328 * 20 19 17 35 35 H 1.09000 * 110.48046 * 225.06778 * 23 21 20 36 36 H 1.09002 * 110.59860 * 102.48153 * 23 21 20 37 37 H 1.08994 * 109.58580 * 173.39910 * 24 14 13 38 38 H 1.09002 * 109.58042 * 293.81990 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2843 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 1 0.6230 -2.5566 0.8896 11 6 0.3738 -2.5833 -1.2507 12 6 -0.4192 -3.8957 -1.2360 13 6 0.5594 -5.0744 -1.2479 14 7 1.4999 -4.9231 -0.1293 15 6 1.6748 -5.9202 0.7605 16 8 2.4538 -5.7828 1.6798 17 6 0.9023 -7.2057 0.6131 18 1 1.1142 -7.6780 -0.3461 19 6 -0.6134 -6.9630 0.7868 20 7 -1.1212 -8.1478 1.4895 21 6 -0.1224 -8.8413 2.0628 22 8 -0.2642 -9.8576 2.7093 23 6 1.2043 -8.1700 1.7834 24 6 2.2458 -3.6639 0.0012 25 1 -0.4850 0.8401 -0.0004 26 1 -0.3186 -1.7417 -1.2661 27 1 1.0045 -2.5507 -2.1391 28 1 -1.0610 -3.9468 -2.1155 29 1 -1.0314 -3.9403 -0.3352 30 1 1.1093 -5.0833 -2.1890 31 1 0.0081 -6.0081 -1.1380 32 1 -0.7860 -6.0676 1.3840 33 1 -1.0939 -6.8662 -0.1867 34 1 -2.0572 -8.3983 1.5339 35 1 1.9500 -8.9077 1.4873 36 1 1.5445 -7.6145 2.6574 37 1 2.8055 -3.6661 0.9365 38 1 2.9332 -3.5579 -0.8381 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597911418.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:26 Heat of formation + Delta-G solvation = -76.390821 kcal Electronic energy + Delta-G solvation = -20850.268185 eV Core-core repulsion = 17692.137519 eV Total energy + Delta-G solvation = -3158.130667 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.87770 -39.26750 -36.98451 -36.25844 -33.61820 -31.75851 -31.37848 -30.26226 -27.85433 -25.14970 -25.09936 -22.67832 -21.80253 -20.70535 -19.91542 -18.34469 -17.61797 -17.37241 -16.37332 -15.78608 -15.30814 -14.94286 -14.80882 -14.49570 -13.98327 -13.57968 -13.48307 -13.38319 -13.05464 -12.75131 -12.67071 -12.25002 -12.05360 -11.60181 -11.39843 -11.01696 -10.92592 -10.81764 -10.41087 -10.05958 -10.04130 -9.91293 -9.61009 -9.44414 -9.30136 -8.92804 -8.45810 -8.04543 -6.08802 -4.15994 2.47367 2.75500 3.19340 3.27244 3.28645 3.32198 3.36835 4.16062 4.22150 4.37170 4.56680 4.77151 4.93417 5.11679 5.21470 5.35208 5.39474 5.49408 5.63768 5.66864 5.83391 5.99544 6.21475 6.27363 6.35870 6.55136 6.58516 6.67940 6.80437 6.83229 7.05271 7.22760 7.61203 7.78805 7.87690 7.98974 8.08827 8.28413 8.44652 8.87254 9.49482 10.96746 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.036150 B = 0.004572 C = 0.004398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.367295 B = 6122.270930 C = 6364.954697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.065 3.935 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.516 4.516 8 H 0.057 0.943 9 C 0.041 3.959 10 H 0.029 0.971 11 C -0.113 4.113 12 C -0.136 4.136 13 C 0.101 3.899 14 N -0.598 5.598 15 C 0.519 3.481 16 O -0.542 6.542 17 C -0.124 4.124 18 H 0.115 0.885 19 C 0.109 3.891 20 N -0.731 5.731 21 C 0.523 3.477 22 O -0.538 6.538 23 C -0.141 4.141 24 C 0.116 3.884 25 H 0.261 0.739 26 H 0.096 0.904 27 H 0.036 0.964 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.411 0.589 35 H 0.106 0.894 36 H 0.123 0.877 37 H 0.080 0.920 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.903 -11.915 -4.194 12.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.137 4.137 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.555 4.555 8 H 0.075 0.925 9 C 0.022 3.978 10 H 0.048 0.952 11 C -0.151 4.151 12 C -0.174 4.174 13 C -0.022 4.022 14 N -0.329 5.329 15 C 0.305 3.695 16 O -0.420 6.420 17 C -0.146 4.146 18 H 0.133 0.867 19 C -0.015 4.015 20 N -0.388 5.388 21 C 0.309 3.691 22 O -0.415 6.415 23 C -0.181 4.181 24 C -0.005 4.005 25 H 0.071 0.929 26 H 0.114 0.886 27 H 0.055 0.945 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.101 0.899 33 H 0.111 0.889 34 H 0.250 0.750 35 H 0.124 0.876 36 H 0.141 0.859 37 H 0.099 0.901 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.582 -12.193 -3.380 12.914 hybrid contribution -0.081 1.001 -0.247 1.034 sum -2.663 -11.192 -3.627 12.063 Atomic orbital electron populations 1.69851 1.05908 1.26674 1.50328 1.24920 0.94854 0.99090 0.94818 0.86638 0.79608 0.82944 0.78716 1.20240 1.21298 1.20192 1.21028 0.92988 0.90255 1.51230 0.92499 1.18958 0.92920 0.91142 0.94781 0.95244 1.21692 0.99455 0.95316 0.98637 1.22072 0.97567 0.96689 1.01064 1.21938 0.91623 0.99254 0.89382 1.48285 1.42008 1.15984 1.26646 1.19957 0.82982 0.84358 0.82238 1.90688 1.37765 1.81065 1.32465 1.22270 0.95190 0.95736 1.01429 0.86738 1.22233 0.92372 0.88702 0.98243 1.46262 1.10077 1.27153 1.55270 1.20932 0.87492 0.83057 0.77577 1.90748 1.86124 1.24153 1.40433 1.22294 0.96161 0.99119 1.00526 1.22062 0.95125 0.81594 1.01692 0.92874 0.88608 0.94502 0.92282 0.92295 0.91645 0.90865 0.89929 0.88925 0.75008 0.87552 0.85859 0.90149 0.92485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.98 11.32 55.43 0.63 -23.36 16 2 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 3 Si 0.89 20.46 29.54 -169.99 -5.02 15.44 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.52 -13.36 8.56 -34.44 -0.29 -13.66 16 8 H 0.06 1.46 7.74 -52.48 -0.41 1.05 16 9 C 0.04 0.94 2.25 -91.66 -0.21 0.73 16 10 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 11 C -0.11 -2.32 4.97 -26.53 -0.13 -2.45 16 12 C -0.14 -2.07 6.11 -26.45 -0.16 -2.23 16 13 C 0.10 1.29 6.00 -3.71 -0.02 1.27 16 14 N -0.60 -9.58 2.97 -172.77 -0.51 -10.10 16 15 C 0.52 8.05 6.99 -10.98 -0.08 7.97 16 16 O -0.54 -10.48 14.95 5.56 0.08 -10.40 16 17 C -0.12 -1.36 2.55 -90.14 -0.23 -1.59 16 18 H 0.11 0.97 7.94 -51.93 -0.41 0.56 16 19 C 0.11 1.04 6.28 -3.09 -0.02 1.02 16 20 N -0.73 -7.27 6.24 -59.16 -0.37 -7.64 16 21 C 0.52 6.74 8.43 -10.86 -0.09 6.65 16 22 O -0.54 -8.93 18.03 5.56 0.10 -8.83 16 23 C -0.14 -1.66 6.20 -26.74 -0.17 -1.83 16 24 C 0.12 2.30 5.66 -3.71 -0.02 2.28 16 25 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 26 H 0.10 2.28 6.05 -51.93 -0.31 1.97 16 27 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.07 0.68 3.98 -51.93 -0.21 0.47 16 32 H 0.08 0.92 7.88 -51.93 -0.41 0.51 16 33 H 0.09 0.65 6.49 -51.93 -0.34 0.32 16 34 H 0.41 3.31 8.96 -40.82 -0.37 2.95 16 35 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.12 1.68 7.01 -51.93 -0.36 1.31 16 37 H 0.08 1.74 7.00 -51.93 -0.36 1.37 16 38 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 302.03 15.07 4.55 4.55 Total: -1.00 -30.99 302.03 -7.33 -38.32 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -5.27 Total: 2.24 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: -1.52 Total: -0.23 kcal Atomic # 7 Polarization: -40.84 SS G_CDS: -0.26 Total: -41.09 kcal Atomic # 8 Polarization: -19.41 SS G_CDS: 0.18 Total: -19.23 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.99 -7.33 -38.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597911418.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.067 kcal (2) G-P(sol) polarization free energy of solvation -30.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds