Wall clock time and date at job start Mon Mar 30 2020 04:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00196 * 2 1 4 4 H 1.48497 * 109.47123 * 239.99676 * 3 2 1 5 5 H 1.48494 * 109.47303 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47322 * 119.99946 * 3 2 1 7 7 C 1.37878 * 119.99868 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00106 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99900 * 0.02562 * 7 2 1 10 10 H 1.08994 * 109.49495 * 300.05925 * 9 7 2 11 11 C 1.53034 * 109.52573 * 60.14536 * 9 7 2 12 12 C 1.53346 * 109.61010 * 181.34079 * 11 9 7 13 13 C 1.53195 * 109.14901 * 298.71225 * 12 11 9 14 14 N 1.46919 * 108.89273 * 54.57640 * 13 12 11 15 15 C 1.34780 * 120.63395 * 126.29715 * 14 13 12 16 16 O 1.21281 * 120.00120 * 180.02562 * 15 14 13 17 17 C 1.50700 * 119.99750 * 0.02562 * 15 14 13 18 18 H 1.09004 * 110.85790 * 59.29487 * 17 15 14 19 19 C 1.54478 * 110.97133 * 295.50774 * 17 15 14 20 20 N 1.46817 * 105.44782 * 216.48984 * 19 17 15 21 21 C 1.34425 * 111.31158 * 16.96557 * 20 19 17 22 22 O 1.21283 * 124.93969 * 179.65803 * 21 20 19 23 23 C 1.51282 * 110.11695 * 359.62167 * 21 20 19 24 24 C 1.46933 * 118.74003 * 306.32349 * 14 13 12 25 25 H 0.97006 * 119.99699 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.45836 * 301.35501 * 11 9 7 27 27 H 1.09000 * 109.46169 * 61.30870 * 11 9 7 28 28 H 1.08997 * 109.68637 * 178.74435 * 12 11 9 29 29 H 1.09002 * 109.47277 * 58.54691 * 12 11 9 30 30 H 1.09002 * 109.58720 * 294.71670 * 13 12 11 31 31 H 1.08996 * 109.58651 * 174.43567 * 13 12 11 32 32 H 1.09001 * 110.24617 * 335.46824 * 19 17 15 33 33 H 1.08998 * 110.24575 * 97.46229 * 19 17 15 34 34 H 0.96998 * 124.33782 * 196.99328 * 20 19 17 35 35 H 1.09000 * 110.48046 * 225.06778 * 23 21 20 36 36 H 1.09002 * 110.59860 * 102.48153 * 23 21 20 37 37 H 1.08994 * 109.58580 * 173.39910 * 24 14 13 38 38 H 1.09002 * 109.58042 * 293.81990 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2843 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 1 0.6230 -2.5566 0.8896 11 6 0.3738 -2.5833 -1.2507 12 6 -0.4192 -3.8957 -1.2360 13 6 0.5594 -5.0744 -1.2479 14 7 1.4999 -4.9231 -0.1293 15 6 1.6748 -5.9202 0.7605 16 8 2.4538 -5.7828 1.6798 17 6 0.9023 -7.2057 0.6131 18 1 1.1142 -7.6780 -0.3461 19 6 -0.6134 -6.9630 0.7868 20 7 -1.1212 -8.1478 1.4895 21 6 -0.1224 -8.8413 2.0628 22 8 -0.2642 -9.8576 2.7093 23 6 1.2043 -8.1700 1.7834 24 6 2.2458 -3.6639 0.0012 25 1 -0.4850 0.8401 -0.0004 26 1 -0.3186 -1.7417 -1.2661 27 1 1.0045 -2.5507 -2.1391 28 1 -1.0610 -3.9468 -2.1155 29 1 -1.0314 -3.9403 -0.3352 30 1 1.1093 -5.0833 -2.1890 31 1 0.0081 -6.0081 -1.1380 32 1 -0.7860 -6.0676 1.3840 33 1 -1.0939 -6.8662 -0.1867 34 1 -2.0572 -8.3983 1.5339 35 1 1.9500 -8.9077 1.4873 36 1 1.5445 -7.6145 2.6574 37 1 2.8055 -3.6661 0.9365 38 1 2.9332 -3.5579 -0.8381 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597911418.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:25 Heat of formation + Delta-G solvation = -99.024799 kcal Electronic energy + Delta-G solvation = -20851.249668 eV Core-core repulsion = 17692.137519 eV Total energy + Delta-G solvation = -3159.112150 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.94569 -40.46783 -38.40583 -37.33672 -35.34841 -33.14253 -32.59623 -31.74275 -28.88978 -26.92890 -26.39639 -23.81827 -23.25104 -21.69661 -21.32249 -19.65721 -18.74033 -18.48408 -18.09126 -17.00384 -16.66936 -16.45300 -15.91859 -15.88604 -15.08868 -14.97806 -14.68396 -14.55205 -14.45831 -14.06114 -14.00325 -13.59914 -13.49114 -12.84064 -12.69011 -12.58217 -12.53551 -12.32343 -11.86749 -11.80407 -11.54257 -11.21257 -11.12500 -10.86243 -10.69034 -10.39812 -10.18173 -9.46726 -8.09165 -6.23354 1.42792 1.43896 1.47081 1.50732 1.57554 2.05186 2.35097 2.45000 3.17543 3.18079 3.30939 3.64283 3.88627 3.99872 4.21064 4.32444 4.42620 4.50293 4.54622 4.62235 4.70354 4.80373 4.89320 4.90428 4.94801 5.04896 5.18040 5.34582 5.52466 5.61595 5.64808 5.73791 5.94509 5.98370 6.18843 6.38343 6.57156 6.86415 7.16331 7.20528 7.44798 8.93904 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.036150 B = 0.004572 C = 0.004398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.367295 B = 6122.270930 C = 6364.954697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.020 3.980 3 Si 0.949 3.051 4 H -0.269 1.269 5 H -0.284 1.284 6 H -0.278 1.278 7 C -0.539 4.539 8 H 0.051 0.949 9 C 0.042 3.958 10 H -0.012 1.012 11 C -0.108 4.108 12 C -0.128 4.128 13 C 0.101 3.899 14 N -0.600 5.600 15 C 0.516 3.484 16 O -0.588 6.588 17 C -0.111 4.111 18 H 0.158 0.842 19 C 0.110 3.890 20 N -0.714 5.714 21 C 0.522 3.478 22 O -0.580 6.580 23 C -0.140 4.140 24 C 0.129 3.871 25 H 0.261 0.739 26 H 0.059 0.941 27 H 0.036 0.964 28 H 0.092 0.908 29 H 0.051 0.949 30 H 0.084 0.916 31 H 0.121 0.879 32 H 0.067 0.933 33 H 0.135 0.865 34 H 0.423 0.577 35 H 0.121 0.879 36 H 0.100 0.900 37 H 0.052 0.948 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.671 -13.295 -6.314 15.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.179 4.179 3 Si 0.775 3.225 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.203 1.203 7 C -0.578 4.578 8 H 0.069 0.931 9 C 0.023 3.977 10 H 0.007 0.993 11 C -0.146 4.146 12 C -0.166 4.166 13 C -0.020 4.020 14 N -0.331 5.331 15 C 0.304 3.696 16 O -0.469 6.469 17 C -0.132 4.132 18 H 0.175 0.825 19 C -0.014 4.014 20 N -0.370 5.370 21 C 0.309 3.691 22 O -0.461 6.461 23 C -0.180 4.180 24 C 0.007 3.993 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.055 0.945 28 H 0.110 0.890 29 H 0.070 0.930 30 H 0.103 0.897 31 H 0.139 0.861 32 H 0.085 0.915 33 H 0.152 0.848 34 H 0.264 0.736 35 H 0.139 0.861 36 H 0.118 0.882 37 H 0.070 0.930 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.388 -13.566 -5.539 15.040 hybrid contribution 0.162 1.486 0.454 1.563 sum -3.226 -12.080 -5.085 13.498 Atomic orbital electron populations 1.69985 1.06942 1.27163 1.50933 1.25611 0.95637 1.01999 0.94676 0.85746 0.78517 0.79458 0.78740 1.19361 1.20913 1.20339 1.21443 0.93070 0.92115 1.51165 0.93121 1.18861 0.93166 0.91393 0.94318 0.99341 1.21484 0.98749 0.97429 0.96959 1.21985 0.97759 0.94565 1.02330 1.22208 0.90867 1.00055 0.88844 1.48302 1.42281 1.14597 1.27896 1.20731 0.82496 0.85413 0.80957 1.90677 1.39898 1.82103 1.34237 1.22273 0.95273 0.92701 1.02993 0.82452 1.22350 0.91514 0.87654 0.99902 1.46171 1.10312 1.26434 1.54049 1.21034 0.88310 0.82605 0.77158 1.90730 1.86731 1.26173 1.42432 1.22253 0.96211 0.99383 1.00182 1.21563 0.94518 0.82782 1.00482 0.93005 0.92214 0.94544 0.88954 0.92998 0.89735 0.86084 0.91501 0.84754 0.73634 0.86066 0.88164 0.92954 0.91936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.37 11.32 21.45 0.24 -50.13 16 2 C 0.02 1.08 5.30 84.66 0.45 1.53 16 3 Si 0.95 42.50 29.54 68.60 2.03 44.53 16 4 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 5 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 6 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 7 C -0.54 -28.76 8.56 25.60 0.22 -28.54 16 8 H 0.05 2.68 7.74 -2.91 -0.02 2.66 16 9 C 0.04 1.97 2.25 -11.47 -0.03 1.94 16 10 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 11 C -0.11 -4.41 4.97 30.72 0.15 -4.25 16 12 C -0.13 -3.53 6.11 30.78 0.19 -3.34 16 13 C 0.10 2.14 6.00 86.36 0.52 2.66 16 14 N -0.60 -18.13 2.97 -818.91 -2.44 -20.57 16 15 C 0.52 15.17 6.99 87.66 0.61 15.78 16 16 O -0.59 -23.03 14.95 -3.03 -0.05 -23.07 16 17 C -0.11 -2.03 2.55 -10.49 -0.03 -2.05 16 18 H 0.16 1.66 7.94 -2.39 -0.02 1.64 16 19 C 0.11 1.64 6.28 86.82 0.54 2.18 16 20 N -0.71 -11.90 6.24 -459.68 -2.87 -14.77 16 21 C 0.52 12.46 8.43 87.90 0.74 13.21 16 22 O -0.58 -18.78 18.03 -3.04 -0.05 -18.83 16 23 C -0.14 -3.06 6.20 30.59 0.19 -2.87 16 24 C 0.13 5.18 5.66 86.36 0.49 5.67 16 25 H 0.26 13.82 8.31 -92.70 -0.77 13.05 16 26 H 0.06 2.88 6.05 -2.39 -0.01 2.87 16 27 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.12 1.41 3.98 -2.39 -0.01 1.40 16 32 H 0.07 1.29 7.88 -2.39 -0.02 1.28 16 33 H 0.13 0.97 6.49 -2.39 -0.02 0.96 16 34 H 0.42 5.41 8.96 -92.71 -0.83 4.57 16 35 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 36 H 0.10 2.73 7.01 -2.39 -0.02 2.72 16 37 H 0.05 2.36 7.00 -2.39 -0.02 2.35 16 38 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 Total: -1.00 -72.49 302.03 1.17 -71.32 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: 0.25 Total: 9.61 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: 4.05 Total: 1.91 kcal Atomic # 7 Polarization: -80.40 SS G_CDS: -5.06 Total: -85.46 kcal Atomic # 8 Polarization: -41.81 SS G_CDS: -0.10 Total: -41.91 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Total: -72.49 1.17 -71.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597911418.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.700 kcal (2) G-P(sol) polarization free energy of solvation -72.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds