Wall clock time and date at job start Mon Mar 30 2020 04:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86808 * 119.99762 * 2 1 4 4 H 1.48499 * 109.47017 * 269.99799 * 3 2 1 5 5 H 1.48494 * 109.47135 * 30.00153 * 3 2 1 6 6 H 1.48498 * 109.46864 * 150.00239 * 3 2 1 7 7 C 1.37874 * 120.00177 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00096 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00095 * 359.97438 * 7 2 1 10 10 C 1.53493 * 114.20956 * 180.02562 * 9 7 2 11 11 N 1.47072 * 87.98710 * 220.15044 * 10 9 7 12 12 C 1.34777 * 136.05745 * 207.08945 * 11 10 9 13 13 O 1.21283 * 119.99750 * 359.97438 * 12 11 10 14 14 C 1.50702 * 119.99928 * 180.27198 * 12 11 10 15 15 N 1.46491 * 109.46957 * 179.72354 * 14 12 11 16 16 C 1.45755 * 117.94556 * 269.73659 * 15 14 12 17 17 C 1.53108 * 110.38685 * 160.74658 * 16 15 14 18 18 C 1.53340 * 108.52959 * 51.11219 * 17 16 15 19 19 C 1.53073 * 108.42726 * 292.31371 * 18 17 16 20 20 C 1.33359 * 117.95005 * 89.99709 * 15 14 12 21 21 O 1.21280 * 118.23981 * 2.20328 * 20 15 14 22 22 C 1.47067 * 87.88518 * 27.33784 * 11 10 9 23 23 H 0.96998 * 119.99403 * 359.97438 * 1 2 3 24 24 H 1.09004 * 113.28464 * 313.06984 * 9 7 2 25 25 H 1.08997 * 113.46889 * 105.36847 * 10 9 7 26 26 H 1.09003 * 113.51905 * 334.93394 * 10 9 7 27 27 H 1.09004 * 109.46965 * 299.72211 * 14 12 11 28 28 H 1.08994 * 109.46990 * 59.72065 * 14 12 11 29 29 H 1.09000 * 109.30030 * 281.23802 * 16 15 14 30 30 H 1.08995 * 109.30462 * 40.61258 * 16 15 14 31 31 H 1.09000 * 109.80439 * 291.31980 * 17 16 15 32 32 H 1.09000 * 109.54393 * 170.74750 * 17 16 15 33 33 H 1.09000 * 109.67547 * 172.57793 * 18 17 16 34 34 H 1.09005 * 109.70079 * 52.06156 * 18 17 16 35 35 H 1.09000 * 109.39449 * 288.77358 * 19 18 17 36 36 H 1.09001 * 109.33132 * 168.99035 * 19 18 17 37 37 H 1.09008 * 113.46643 * 87.43740 * 22 11 10 38 38 H 1.09001 * 113.47129 * 217.87870 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.1489 -3.7442 -0.0005 11 7 1.2074 -4.3593 -0.9483 12 6 0.8320 -5.6139 -1.2669 13 8 1.3288 -6.5598 -0.6929 14 6 -0.2002 -5.8417 -2.3411 15 7 -0.4279 -7.2797 -2.5025 16 6 0.3949 -7.9975 -3.4681 17 6 0.3712 -9.5003 -3.1763 18 6 -1.0897 -9.9496 -3.0518 19 6 -1.6839 -9.3192 -1.7898 20 6 -1.3785 -7.8492 -1.7605 21 8 -2.0311 -7.1419 -1.0224 22 6 0.8605 -3.0033 -1.3996 23 1 -0.4849 0.8401 0.0004 24 1 0.4439 -2.5306 0.7312 25 1 2.1878 -4.2512 0.9635 26 1 3.1376 -3.5675 -0.4240 27 1 -1.1336 -5.3556 -2.0570 28 1 0.1561 -5.4224 -3.2820 29 1 0.0126 -7.8159 -4.4726 30 1 1.4213 -7.6363 -3.4058 31 1 0.8972 -9.7038 -2.2435 32 1 0.8508 -10.0382 -3.9941 33 1 -1.1342 -11.0360 -2.9752 34 1 -1.6512 -9.6199 -3.9259 35 1 -1.2528 -9.7961 -0.9095 36 1 -2.7641 -9.4649 -1.7880 37 1 1.5094 -2.6303 -2.1921 38 1 -0.1982 -2.8791 -1.6275 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598037213.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:44 Heat of formation + Delta-G solvation = -58.072785 kcal Electronic energy + Delta-G solvation = -20369.314081 eV Core-core repulsion = 17211.977744 eV Total energy + Delta-G solvation = -3157.336337 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.85312 -40.79678 -38.73954 -37.49556 -35.02445 -34.65882 -31.47590 -30.62830 -28.89081 -26.82156 -26.58527 -25.27561 -23.38352 -22.18265 -19.99545 -19.57639 -18.80369 -18.07765 -17.83479 -17.61848 -16.83142 -16.62053 -16.19934 -15.92744 -15.24715 -15.10747 -14.95423 -14.36553 -14.25272 -14.17420 -13.86151 -13.38819 -13.26848 -13.04088 -12.78632 -12.72592 -12.58263 -12.25259 -12.20441 -11.86862 -11.83707 -11.48052 -11.09715 -10.95433 -10.76876 -10.55418 -9.81090 -9.60215 -8.16654 -6.29046 1.40387 1.47931 1.50114 1.54170 1.59995 1.81660 2.19329 2.46525 3.13200 3.48780 3.55900 3.81902 3.89091 3.92621 4.09484 4.21518 4.29623 4.38357 4.47600 4.50279 4.54235 4.60131 4.66884 4.77703 4.84419 4.91140 4.94391 5.01851 5.03886 5.12078 5.27665 5.37502 5.57632 5.80001 6.21161 6.38354 6.80086 6.84428 7.01831 7.12466 7.41458 8.93451 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.045492 B = 0.003873 C = 0.003773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.342398 B = 7227.723161 C = 7418.735251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.020 3.980 3 Si 0.962 3.038 4 H -0.270 1.270 5 H -0.289 1.289 6 H -0.266 1.266 7 C -0.528 4.528 8 H 0.070 0.930 9 C 0.020 3.980 10 C 0.106 3.894 11 N -0.645 5.645 12 C 0.514 3.486 13 O -0.591 6.591 14 C 0.099 3.901 15 N -0.585 5.585 16 C 0.106 3.894 17 C -0.132 4.132 18 C -0.113 4.113 19 C -0.128 4.128 20 C 0.505 3.495 21 O -0.610 6.610 22 C 0.113 3.887 23 H 0.265 0.735 24 H 0.032 0.968 25 H 0.048 0.952 26 H 0.091 0.909 27 H 0.099 0.901 28 H 0.141 0.859 29 H 0.099 0.901 30 H 0.068 0.932 31 H 0.055 0.945 32 H 0.117 0.883 33 H 0.103 0.897 34 H 0.084 0.916 35 H 0.099 0.901 36 H 0.109 0.891 37 H 0.093 0.907 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.034 -16.656 -12.287 20.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.180 4.180 3 Si 0.787 3.213 4 H -0.195 1.195 5 H -0.215 1.215 6 H -0.191 1.191 7 C -0.566 4.566 8 H 0.088 0.912 9 C 0.000 4.000 10 C -0.016 4.016 11 N -0.379 5.379 12 C 0.304 3.696 13 O -0.473 6.473 14 C -0.028 4.028 15 N -0.315 5.315 16 C -0.015 4.015 17 C -0.170 4.170 18 C -0.150 4.150 19 C -0.167 4.167 20 C 0.296 3.704 21 O -0.492 6.492 22 C -0.009 4.009 23 H 0.074 0.926 24 H 0.050 0.950 25 H 0.066 0.934 26 H 0.109 0.891 27 H 0.118 0.882 28 H 0.159 0.841 29 H 0.117 0.883 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.135 0.865 33 H 0.121 0.879 34 H 0.103 0.897 35 H 0.117 0.883 36 H 0.128 0.872 37 H 0.111 0.889 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.262 -16.946 -11.705 20.598 hybrid contribution 0.266 1.243 0.607 1.409 sum 0.004 -15.703 -11.098 19.229 Atomic orbital electron populations 1.70085 1.07597 1.27915 1.50244 1.25814 0.95544 1.02744 0.93941 0.85491 0.78575 0.78693 0.78503 1.19530 1.21468 1.19067 1.21199 0.93385 0.90255 1.51720 0.91226 1.20275 0.94519 0.91966 0.93194 1.23234 0.94731 0.91915 0.91723 1.50030 1.42434 1.05174 1.40299 1.21278 0.83424 0.80531 0.84390 1.90590 1.59005 1.41710 1.55966 1.21243 0.98428 0.84355 0.98780 1.47142 1.35700 1.07927 1.40735 1.21820 0.94677 0.93378 0.91667 1.21934 0.97929 0.93312 1.03808 1.21675 0.95033 1.02283 0.96031 1.21700 1.04461 0.88151 1.02423 1.21145 0.78533 0.92620 0.78097 1.90706 1.52050 1.64778 1.41698 1.23459 1.00068 0.76551 1.00822 0.92640 0.95019 0.93360 0.89113 0.88248 0.84101 0.88286 0.91374 0.92589 0.86470 0.87874 0.89718 0.88277 0.87226 0.88915 0.92291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.34 13.26 21.45 0.28 -51.06 16 2 C 0.02 1.03 5.46 84.65 0.46 1.49 16 3 Si 0.96 40.91 29.54 68.60 2.03 42.93 16 4 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 5 H -0.29 -12.34 7.11 99.48 0.71 -11.64 16 6 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 7 C -0.53 -27.01 8.83 25.60 0.23 -26.78 16 8 H 0.07 3.41 7.81 -2.91 -0.02 3.39 16 9 C 0.02 0.97 3.79 -11.12 -0.04 0.93 16 10 C 0.11 4.61 8.17 83.18 0.68 5.29 16 11 N -0.65 -27.12 3.69 -857.68 -3.16 -30.28 16 12 C 0.51 20.98 8.13 87.66 0.71 21.70 16 13 O -0.59 -27.55 17.20 -3.04 -0.05 -27.60 16 14 C 0.10 3.15 5.53 85.64 0.47 3.62 16 15 N -0.58 -16.40 2.30 -830.65 -1.91 -18.31 16 16 C 0.11 1.92 6.32 86.56 0.55 2.47 16 17 C -0.13 -1.80 6.03 30.74 0.19 -1.61 16 18 C -0.11 -1.33 6.03 30.73 0.19 -1.15 16 19 C -0.13 -2.58 6.03 29.71 0.18 -2.40 16 20 C 0.51 15.92 7.44 87.71 0.65 16.57 16 21 O -0.61 -25.77 16.18 -3.03 -0.05 -25.82 16 22 C 0.11 4.77 8.00 83.27 0.67 5.44 16 23 H 0.26 14.04 8.31 -92.71 -0.77 13.27 16 24 H 0.03 1.77 8.11 -2.38 -0.02 1.75 16 25 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 26 H 0.09 3.60 8.10 -2.39 -0.02 3.58 16 27 H 0.10 3.54 7.13 -2.38 -0.02 3.52 16 28 H 0.14 3.32 8.01 -2.39 -0.02 3.30 16 29 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.07 1.36 8.10 -2.39 -0.02 1.34 16 31 H 0.06 1.02 8.12 -2.39 -0.02 1.00 16 32 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.08 0.82 8.13 -2.38 -0.02 0.80 16 35 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.09 3.60 8.10 -2.38 -0.02 3.58 16 38 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 Total: -1.00 -73.16 320.19 3.10 -70.05 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: 1.04 Total: 14.54 kcal Atomic # 6 Polarization: 20.62 SS G_CDS: 4.93 Total: 25.55 kcal Atomic # 7 Polarization: -94.86 SS G_CDS: -4.79 Total: -99.65 kcal Atomic # 8 Polarization: -53.32 SS G_CDS: -0.10 Total: -53.43 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 2.03 Total: 42.93 kcal Total: -73.16 3.10 -70.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598037213.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.981 kcal (2) G-P(sol) polarization free energy of solvation -73.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds