Wall clock time and date at job start Mon Mar 30 2020 04:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86800 * 120.00303 * 2 1 4 4 H 1.48501 * 109.46982 * 269.99707 * 3 2 1 5 5 H 1.48499 * 109.47203 * 29.99999 * 3 2 1 6 6 H 1.48496 * 109.46967 * 149.99811 * 3 2 1 7 7 C 1.38950 * 119.99359 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99780 * 180.02562 * 7 2 1 9 9 N 1.37092 * 120.00467 * 0.02562 * 7 2 1 10 10 C 1.34779 * 120.00612 * 180.02562 * 9 7 2 11 11 O 1.21300 * 119.99321 * 359.97438 * 10 9 7 12 12 C 1.50690 * 120.00323 * 179.97438 * 10 9 7 13 13 N 1.46507 * 109.47232 * 180.02562 * 12 10 9 14 14 C 1.34770 * 120.00174 * 179.72806 * 13 12 10 15 15 O 1.21289 * 119.99972 * 0.27063 * 14 13 12 16 16 C 1.50703 * 120.00285 * 180.27281 * 14 13 12 17 17 H 1.09003 * 110.05016 * 23.13201 * 16 14 13 18 18 C 1.54385 * 110.07256 * 144.61729 * 16 14 13 19 19 C 1.54917 * 104.22296 * 142.78219 * 18 16 14 20 20 C 1.54993 * 102.82085 * 322.28324 * 19 18 16 21 21 C 1.53476 * 110.06812 * 261.59126 * 16 14 13 22 22 C 1.52577 * 121.04930 * 96.56962 * 21 16 14 23 23 C 1.52551 * 121.09226 * 24.85271 * 21 16 14 24 24 H 0.97008 * 119.99447 * 0.02562 * 1 2 3 25 25 H 0.97007 * 120.00044 * 359.97438 * 9 7 2 26 26 H 1.08996 * 109.47365 * 60.00102 * 12 10 9 27 27 H 1.08996 * 109.47396 * 299.99600 * 12 10 9 28 28 H 0.97005 * 119.99701 * 359.97438 * 13 12 10 29 29 H 1.08992 * 110.48140 * 261.47129 * 18 16 14 30 30 H 1.08998 * 110.47768 * 23.96618 * 18 16 14 31 31 H 1.09000 * 110.74064 * 80.61583 * 19 18 16 32 32 H 1.08997 * 110.74477 * 203.94888 * 19 18 16 33 33 H 1.09006 * 110.51057 * 156.21365 * 20 19 18 34 34 H 1.08997 * 110.51076 * 278.92519 * 20 19 18 35 35 H 1.08996 * 117.51244 * 356.96340 * 22 21 16 36 36 H 1.09009 * 117.51047 * 142.06041 * 22 21 16 37 37 H 1.09004 * 117.51076 * 217.88082 * 23 21 16 38 38 H 1.08994 * 117.50563 * 2.96987 * 23 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4958 2.0463 -1.4001 5 1 1.4458 2.6527 0.7000 6 1 3.5457 1.4400 0.7001 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2035 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9970 -3.5580 0.0016 11 8 3.2100 -3.5580 0.0021 12 6 1.2435 -4.8629 0.0022 13 7 2.1954 -5.9766 0.0039 14 6 1.7461 -7.2472 0.0102 15 8 0.5536 -7.4687 0.0095 16 6 2.7253 -8.3927 0.0182 17 1 3.6832 -8.0627 0.4202 18 6 2.1695 -9.5590 0.8635 19 6 2.6184 -10.8300 0.1001 20 6 2.4664 -10.4113 -1.3845 21 6 2.9095 -8.9379 -1.4045 22 6 4.0778 -8.4855 -2.2755 23 6 2.6492 -8.0599 -2.6245 24 1 -0.4850 0.8402 -0.0004 25 1 0.3532 -2.3906 0.0005 26 1 0.6172 -4.9213 -0.8880 27 1 0.6165 -4.9201 0.8919 28 1 3.1491 -5.7994 0.0041 29 1 2.5999 -9.5433 1.8647 30 1 1.0820 -9.5074 0.9160 31 1 3.6565 -11.0712 0.3289 32 1 1.9653 -11.6710 0.3328 33 1 3.1156 -11.0141 -2.0197 34 1 1.4279 -10.5022 -1.7025 35 1 4.7444 -7.7253 -1.8685 36 1 4.5501 -9.2334 -2.9125 37 1 2.1820 -8.5278 -3.4911 38 1 2.3763 -7.0197 -2.4471 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599932551.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:46 Heat of formation + Delta-G solvation = -66.008481 kcal Electronic energy + Delta-G solvation = -20065.938277 eV Core-core repulsion = 16908.257822 eV Total energy + Delta-G solvation = -3157.680455 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.41283 -38.56301 -37.62564 -34.56201 -34.15750 -33.59819 -31.39937 -29.80426 -27.43703 -25.79304 -24.42931 -22.55227 -21.34046 -20.40940 -19.66716 -18.81128 -18.02935 -17.05078 -16.00464 -15.75886 -15.37560 -15.02668 -14.93095 -14.56335 -14.22649 -13.80477 -13.61445 -13.35373 -12.83216 -12.59059 -12.19702 -11.95248 -11.68696 -11.62595 -11.53128 -11.20073 -11.13567 -10.96770 -10.71528 -10.46874 -10.33245 -10.32239 -10.09049 -9.64729 -9.38723 -8.77957 -8.64241 -8.11264 -6.52579 -3.94633 2.82713 3.10923 3.20892 3.24861 3.32314 3.72851 3.77303 4.11045 4.25427 4.48770 4.74172 4.77858 4.87256 4.98537 5.10990 5.15964 5.19992 5.34585 5.48599 5.58733 5.64190 5.71030 5.77145 5.87045 5.88860 5.94946 5.95908 5.99844 6.05888 6.07435 6.09994 6.26281 6.70243 7.44914 7.83735 7.90957 8.43139 8.49267 9.03468 9.38138 9.86038 10.64305 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.041080 B = 0.003662 C = 0.003546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.427805 B = 7643.767537 C = 7895.435607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.026 3.974 3 Si 0.933 3.067 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.305 4.305 8 H 0.105 0.895 9 N -0.549 5.549 10 C 0.428 3.572 11 O -0.598 6.598 12 C 0.108 3.892 13 N -0.708 5.708 14 C 0.520 3.480 15 O -0.546 6.546 16 C -0.076 4.076 17 H 0.091 0.909 18 C -0.111 4.111 19 C -0.119 4.119 20 C -0.085 4.085 21 C -0.118 4.118 22 C -0.165 4.165 23 C -0.169 4.169 24 H 0.274 0.726 25 H 0.396 0.604 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.410 0.590 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.191 -17.580 -1.656 18.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.435 4.435 8 H 0.123 0.877 9 N -0.184 5.184 10 C 0.213 3.787 11 O -0.484 6.484 12 C -0.020 4.020 13 N -0.362 5.362 14 C 0.306 3.694 15 O -0.424 6.424 16 C -0.097 4.097 17 H 0.110 0.890 18 C -0.149 4.149 19 C -0.157 4.157 20 C -0.123 4.123 21 C -0.118 4.118 22 C -0.202 4.202 23 C -0.206 4.206 24 H 0.084 0.916 25 H 0.230 0.770 26 H 0.100 0.900 27 H 0.101 0.899 28 H 0.248 0.752 29 H 0.088 0.912 30 H 0.104 0.896 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.116 0.884 36 H 0.114 0.886 37 H 0.114 0.886 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 3.992 -17.517 -1.644 18.041 hybrid contribution 0.211 1.173 -0.046 1.193 sum 4.203 -16.344 -1.690 16.960 Atomic orbital electron populations 1.69621 1.06021 1.28531 1.49300 1.25330 0.95667 0.99942 0.96770 0.85809 0.79233 0.80473 0.78501 1.20252 1.20784 1.19304 1.19731 0.93461 0.82016 1.48278 0.87685 1.41801 1.09477 1.04486 1.62594 1.19756 0.88298 0.85008 0.85593 1.90495 1.13708 1.86840 1.57387 1.20945 0.91985 0.85916 1.03135 1.45839 1.11460 1.04714 1.74156 1.20429 0.89625 0.83575 0.75806 1.90656 1.16769 1.84760 1.50207 1.21398 0.98641 0.94310 0.95394 0.89049 1.22352 1.02555 0.92355 0.97622 1.22441 1.01218 0.97270 0.94741 1.21866 1.01295 0.92210 0.96913 1.21503 1.04041 0.95814 0.90478 1.23063 0.91258 1.03352 1.02536 1.23012 0.98895 1.00412 0.98297 0.91579 0.77046 0.89979 0.89933 0.75243 0.91227 0.89561 0.91355 0.91226 0.91529 0.90917 0.88419 0.88565 0.88588 0.88412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.93 13.05 55.50 0.72 -23.20 16 2 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 3 Si 0.93 20.54 29.55 -169.99 -5.02 15.51 16 4 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 6 H -0.27 -5.89 7.11 56.52 0.40 -5.48 16 7 C -0.31 -8.32 9.68 -14.94 -0.14 -8.46 16 8 H 0.11 2.98 7.16 -52.49 -0.38 2.60 16 9 N -0.55 -13.66 5.29 -10.97 -0.06 -13.71 16 10 C 0.43 9.84 7.85 -10.99 -0.09 9.76 16 11 O -0.60 -15.29 15.24 5.54 0.08 -15.20 16 12 C 0.11 2.01 6.15 -5.19 -0.03 1.98 16 13 N -0.71 -11.88 5.38 -61.47 -0.33 -12.21 16 14 C 0.52 8.27 5.51 -10.99 -0.06 8.21 16 15 O -0.55 -10.31 15.85 5.55 0.09 -10.22 16 16 C -0.08 -0.94 3.16 -90.80 -0.29 -1.22 16 17 H 0.09 1.01 8.11 -51.93 -0.42 0.59 16 18 C -0.11 -1.22 6.33 -24.99 -0.16 -1.38 16 19 C -0.12 -1.05 6.91 -24.67 -0.17 -1.22 16 20 C -0.09 -0.83 6.58 -25.22 -0.17 -0.99 16 21 C -0.12 -1.33 2.26 -154.26 -0.35 -1.68 16 22 C -0.17 -1.70 10.24 -26.90 -0.28 -1.97 16 23 C -0.17 -2.05 9.63 -26.91 -0.26 -2.31 16 24 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 25 H 0.40 9.49 7.90 -40.82 -0.32 9.17 16 26 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 27 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 28 H 0.41 6.79 7.41 -40.82 -0.30 6.49 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.09 1.11 6.97 -51.93 -0.36 0.75 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.54 8.11 -51.93 -0.42 0.12 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.10 0.83 8.14 -51.92 -0.42 0.41 16 37 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.10 1.39 7.18 -51.93 -0.37 1.02 16 LS Contribution 319.90 15.07 4.82 4.82 Total: -1.00 -30.55 319.90 -7.30 -37.85 By element: Atomic # 1 Polarization: 20.60 SS G_CDS: -5.52 Total: 15.08 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: -2.08 Total: 1.29 kcal Atomic # 7 Polarization: -49.47 SS G_CDS: 0.34 Total: -49.13 kcal Atomic # 8 Polarization: -25.60 SS G_CDS: 0.17 Total: -25.43 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.55 -7.30 -37.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599932551.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.160 kcal (2) G-P(sol) polarization free energy of solvation -30.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds