Wall clock time and date at job start Mon Mar 30 2020 04:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86800 * 120.00303 * 2 1 4 4 H 1.48501 * 109.46982 * 269.99707 * 3 2 1 5 5 H 1.48499 * 109.47203 * 29.99999 * 3 2 1 6 6 H 1.48496 * 109.46967 * 149.99811 * 3 2 1 7 7 C 1.38950 * 119.99359 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99780 * 180.02562 * 7 2 1 9 9 N 1.37092 * 120.00467 * 0.02562 * 7 2 1 10 10 C 1.34779 * 120.00612 * 180.02562 * 9 7 2 11 11 O 1.21300 * 119.99321 * 359.97438 * 10 9 7 12 12 C 1.50690 * 120.00323 * 179.97438 * 10 9 7 13 13 N 1.46507 * 109.47232 * 180.02562 * 12 10 9 14 14 C 1.34770 * 120.00174 * 179.72806 * 13 12 10 15 15 O 1.21289 * 119.99972 * 0.27063 * 14 13 12 16 16 C 1.50703 * 120.00285 * 180.27281 * 14 13 12 17 17 H 1.09003 * 110.05016 * 23.13201 * 16 14 13 18 18 C 1.54385 * 110.07256 * 144.61729 * 16 14 13 19 19 C 1.54917 * 104.22296 * 142.78219 * 18 16 14 20 20 C 1.54993 * 102.82085 * 322.28324 * 19 18 16 21 21 C 1.53476 * 110.06812 * 261.59126 * 16 14 13 22 22 C 1.52577 * 121.04930 * 96.56962 * 21 16 14 23 23 C 1.52551 * 121.09226 * 24.85271 * 21 16 14 24 24 H 0.97008 * 119.99447 * 0.02562 * 1 2 3 25 25 H 0.97007 * 120.00044 * 359.97438 * 9 7 2 26 26 H 1.08996 * 109.47365 * 60.00102 * 12 10 9 27 27 H 1.08996 * 109.47396 * 299.99600 * 12 10 9 28 28 H 0.97005 * 119.99701 * 359.97438 * 13 12 10 29 29 H 1.08992 * 110.48140 * 261.47129 * 18 16 14 30 30 H 1.08998 * 110.47768 * 23.96618 * 18 16 14 31 31 H 1.09000 * 110.74064 * 80.61583 * 19 18 16 32 32 H 1.08997 * 110.74477 * 203.94888 * 19 18 16 33 33 H 1.09006 * 110.51057 * 156.21365 * 20 19 18 34 34 H 1.08997 * 110.51076 * 278.92519 * 20 19 18 35 35 H 1.08996 * 117.51244 * 356.96340 * 22 21 16 36 36 H 1.09009 * 117.51047 * 142.06041 * 22 21 16 37 37 H 1.09004 * 117.51076 * 217.88082 * 23 21 16 38 38 H 1.08994 * 117.50563 * 2.96987 * 23 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4958 2.0463 -1.4001 5 1 1.4458 2.6527 0.7000 6 1 3.5457 1.4400 0.7001 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2035 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9970 -3.5580 0.0016 11 8 3.2100 -3.5580 0.0021 12 6 1.2435 -4.8629 0.0022 13 7 2.1954 -5.9766 0.0039 14 6 1.7461 -7.2472 0.0102 15 8 0.5536 -7.4687 0.0095 16 6 2.7253 -8.3927 0.0182 17 1 3.6832 -8.0627 0.4202 18 6 2.1695 -9.5590 0.8635 19 6 2.6184 -10.8300 0.1001 20 6 2.4664 -10.4113 -1.3845 21 6 2.9095 -8.9379 -1.4045 22 6 4.0778 -8.4855 -2.2755 23 6 2.6492 -8.0599 -2.6245 24 1 -0.4850 0.8402 -0.0004 25 1 0.3532 -2.3906 0.0005 26 1 0.6172 -4.9213 -0.8880 27 1 0.6165 -4.9201 0.8919 28 1 3.1491 -5.7994 0.0041 29 1 2.5999 -9.5433 1.8647 30 1 1.0820 -9.5074 0.9160 31 1 3.6565 -11.0712 0.3289 32 1 1.9653 -11.6710 0.3328 33 1 3.1156 -11.0141 -2.0197 34 1 1.4279 -10.5022 -1.7025 35 1 4.7444 -7.7253 -1.8685 36 1 4.5501 -9.2334 -2.9125 37 1 2.1820 -8.5278 -3.4911 38 1 2.3763 -7.0197 -2.4471 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599932551.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:45 Heat of formation + Delta-G solvation = -86.477741 kcal Electronic energy + Delta-G solvation = -20066.825891 eV Core-core repulsion = 16908.257822 eV Total energy + Delta-G solvation = -3158.568068 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.57808 -40.25741 -38.90634 -36.28707 -35.42227 -34.92281 -33.40423 -30.90848 -28.89136 -26.86150 -26.14597 -23.43956 -22.43631 -21.43929 -21.35927 -20.23398 -19.78610 -18.34649 -17.29916 -17.18096 -16.87401 -16.45897 -16.28144 -15.99651 -15.60818 -15.33811 -15.06609 -14.50339 -13.97313 -13.83422 -13.56696 -13.51310 -13.42231 -12.92309 -12.56846 -12.47931 -12.41416 -12.13720 -11.95697 -11.81729 -11.59219 -11.52141 -11.19190 -11.16782 -10.59815 -10.46570 -10.23037 -10.10755 -8.53218 -6.03776 1.34802 1.41639 1.54415 1.55922 1.87985 1.99512 2.29995 2.81470 3.09945 3.13772 3.38604 3.63223 3.80921 3.87562 4.05101 4.18318 4.27596 4.33164 4.37391 4.42298 4.48090 4.68359 4.74971 4.78560 4.92883 5.00850 5.06940 5.15178 5.19415 5.21798 5.23568 5.30516 5.36308 5.49790 5.89169 6.43255 6.51433 7.00849 7.15639 7.41248 7.91101 8.63721 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.041080 B = 0.003662 C = 0.003546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.427805 B = 7643.767537 C = 7895.435607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.010 4.010 3 Si 0.998 3.002 4 H -0.270 1.270 5 H -0.271 1.271 6 H -0.269 1.269 7 C -0.338 4.338 8 H 0.087 0.913 9 N -0.559 5.559 10 C 0.432 3.568 11 O -0.623 6.623 12 C 0.120 3.880 13 N -0.708 5.708 14 C 0.521 3.479 15 O -0.578 6.578 16 C -0.076 4.076 17 H 0.107 0.893 18 C -0.113 4.113 19 C -0.111 4.111 20 C -0.085 4.085 21 C -0.122 4.122 22 C -0.146 4.146 23 C -0.191 4.191 24 H 0.280 0.720 25 H 0.398 0.602 26 H 0.089 0.911 27 H 0.092 0.908 28 H 0.412 0.588 29 H 0.083 0.917 30 H 0.062 0.938 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.061 0.939 35 H 0.096 0.904 36 H 0.120 0.880 37 H 0.103 0.897 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.269 -18.689 -1.710 19.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.211 4.211 3 Si 0.821 3.179 4 H -0.195 1.195 5 H -0.196 1.196 6 H -0.194 1.194 7 C -0.468 4.468 8 H 0.105 0.895 9 N -0.194 5.194 10 C 0.220 3.780 11 O -0.511 6.511 12 C -0.007 4.007 13 N -0.362 5.362 14 C 0.309 3.691 15 O -0.458 6.458 16 C -0.097 4.097 17 H 0.125 0.875 18 C -0.150 4.150 19 C -0.148 4.148 20 C -0.122 4.122 21 C -0.122 4.122 22 C -0.183 4.183 23 C -0.228 4.228 24 H 0.090 0.910 25 H 0.232 0.768 26 H 0.107 0.893 27 H 0.110 0.890 28 H 0.250 0.750 29 H 0.102 0.898 30 H 0.081 0.919 31 H 0.105 0.895 32 H 0.100 0.900 33 H 0.106 0.894 34 H 0.080 0.920 35 H 0.114 0.886 36 H 0.138 0.862 37 H 0.122 0.878 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.063 -18.646 -1.699 19.396 hybrid contribution -0.147 1.486 -0.036 1.493 sum 4.916 -17.160 -1.735 17.935 Atomic orbital electron populations 1.69688 1.07055 1.29684 1.49198 1.26151 0.96540 1.02732 0.95682 0.84855 0.77928 0.76377 0.78754 1.19508 1.19603 1.19375 1.19750 0.92985 0.83532 1.50504 0.89538 1.41851 1.09562 1.04641 1.63347 1.20393 0.88130 0.85873 0.83650 1.90469 1.15088 1.87521 1.58047 1.20751 0.91868 0.84258 1.03872 1.45880 1.11154 1.04679 1.74460 1.21120 0.89888 0.83770 0.74328 1.90638 1.18414 1.85117 1.51609 1.21535 0.98182 0.93163 0.96833 0.87506 1.22381 1.01119 0.92974 0.98573 1.22446 1.02519 0.96350 0.93500 1.21902 1.01081 0.91215 0.98004 1.21631 1.04698 0.96556 0.89355 1.23142 0.90203 1.03301 1.01667 1.22987 1.01158 0.99212 0.99426 0.91028 0.76767 0.89271 0.89040 0.75012 0.89817 0.91913 0.89529 0.89992 0.89396 0.92031 0.88557 0.86207 0.87817 0.91186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.93 13.05 21.66 0.28 -48.65 16 2 C -0.01 -0.54 5.50 84.93 0.47 -0.07 16 3 Si 1.00 41.80 29.55 68.60 2.03 43.83 16 4 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 5 H -0.27 -10.81 7.11 99.48 0.71 -10.11 16 6 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 7 C -0.34 -18.76 9.68 84.04 0.81 -17.95 16 8 H 0.09 5.03 7.16 -2.91 -0.02 5.01 16 9 N -0.56 -28.38 5.29 -306.99 -1.62 -30.00 16 10 C 0.43 20.24 7.85 87.65 0.69 20.93 16 11 O -0.62 -32.41 15.24 -3.09 -0.05 -32.46 16 12 C 0.12 4.53 6.15 85.63 0.53 5.06 16 13 N -0.71 -23.82 5.38 -466.80 -2.51 -26.34 16 14 C 0.52 16.51 5.51 87.66 0.48 16.99 16 15 O -0.58 -22.02 15.85 -3.06 -0.05 -22.07 16 16 C -0.08 -1.77 3.16 -10.91 -0.03 -1.81 16 17 H 0.11 2.15 8.11 -2.39 -0.02 2.13 16 18 C -0.11 -2.29 6.33 31.72 0.20 -2.09 16 19 C -0.11 -1.64 6.91 31.93 0.22 -1.42 16 20 C -0.08 -1.43 6.58 31.57 0.21 -1.22 16 21 C -0.12 -2.54 2.26 -52.02 -0.12 -2.66 16 22 C -0.15 -2.69 10.24 30.49 0.31 -2.38 16 23 C -0.19 -4.50 9.63 30.48 0.29 -4.21 16 24 H 0.28 13.97 8.31 -92.70 -0.77 13.20 16 25 H 0.40 19.51 7.90 -92.70 -0.73 18.77 16 26 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 27 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 28 H 0.41 13.65 7.41 -92.70 -0.69 12.96 16 29 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.06 1.59 6.97 -2.39 -0.02 1.57 16 31 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.09 1.12 8.11 -2.38 -0.02 1.10 16 34 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.12 1.65 8.14 -2.38 -0.02 1.63 16 37 H 0.10 2.22 8.14 -2.38 -0.02 2.20 16 38 H 0.07 2.04 7.18 -2.39 -0.02 2.02 16 Total: -1.00 -65.68 319.90 1.81 -63.87 By element: Atomic # 1 Polarization: 42.97 SS G_CDS: -0.34 Total: 42.64 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: 4.06 Total: 9.18 kcal Atomic # 7 Polarization: -101.14 SS G_CDS: -3.85 Total: -104.99 kcal Atomic # 8 Polarization: -54.43 SS G_CDS: -0.10 Total: -54.52 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.83 kcal Total: -65.68 1.81 -63.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599932551.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.607 kcal (2) G-P(sol) polarization free energy of solvation -65.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds