Wall clock time and date at job start Mon Mar 30 2020 05:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50701 * 119.99743 * 2 1 4 4 C 1.50702 * 119.99803 * 180.02562 * 2 1 3 5 5 C 1.52999 * 109.46813 * 95.00044 * 4 2 1 6 6 H 1.09001 * 110.53340 * 307.82242 * 5 4 2 7 7 N 1.47311 * 110.73349 * 70.74722 * 5 4 2 8 8 C 1.34525 * 106.61678 * 118.36786 * 7 5 4 9 9 O 1.21538 * 123.77354 * 180.20953 * 8 7 5 10 10 N 1.33795 * 112.46280 * 0.37910 * 8 7 5 11 11 C 1.46499 * 124.17916 * 179.86693 * 10 8 7 12 12 C 1.53000 * 109.46840 * 269.69804 * 11 10 8 13 13 C 1.52997 * 109.47060 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.47466 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99890 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00428 * 179.97438 * 14 13 12 17 17 N 1.31517 * 120.00362 * 180.02562 * 16 14 13 18 18 Si 1.86804 * 119.99850 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.47052 * 89.99717 * 18 16 14 20 20 H 1.48495 * 109.47307 * 209.99656 * 18 16 14 21 21 H 1.48500 * 109.47143 * 330.00164 * 18 16 14 22 22 C 1.34772 * 111.64042 * 359.60091 * 10 8 7 23 23 O 1.21228 * 127.15606 * 180.19732 * 22 10 8 24 24 H 1.08009 * 120.00093 * 180.02562 * 1 2 3 25 25 H 1.08000 * 120.00196 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.46786 * 270.00231 * 3 2 1 27 27 H 1.08997 * 109.46865 * 30.00520 * 3 2 1 28 28 H 1.09000 * 109.46792 * 150.00096 * 3 2 1 29 29 H 1.08998 * 109.47161 * 334.99410 * 4 2 1 30 30 H 1.08998 * 109.46341 * 214.99566 * 4 2 1 31 31 H 0.96996 * 126.68785 * 298.61682 * 7 5 4 32 32 H 1.09001 * 109.46813 * 149.70078 * 11 10 8 33 33 H 1.08992 * 109.47397 * 29.70140 * 11 10 8 34 34 H 1.09002 * 109.47398 * 300.00326 * 12 11 10 35 35 H 1.09001 * 109.47194 * 60.00507 * 12 11 10 36 36 H 1.09002 * 109.47153 * 300.00319 * 13 12 11 37 37 H 1.08998 * 109.47533 * 59.99948 * 13 12 11 38 38 H 0.96994 * 119.99814 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 6 2.4273 -1.6833 -1.4378 6 1 1.5433 -1.6590 -2.0750 7 7 3.4708 -0.7868 -1.9647 8 6 4.5353 -1.5594 -2.2467 9 8 5.5794 -1.1322 -2.6988 10 7 4.3150 -2.8513 -1.9773 11 6 5.2988 -3.9158 -2.1900 12 6 5.1367 -4.4855 -3.6007 13 6 6.1637 -5.5976 -3.8227 14 6 6.0045 -6.1583 -5.2124 15 1 5.2469 -5.7610 -5.8715 16 6 6.8268 -7.1780 -5.6428 17 7 6.6882 -7.6670 -6.8558 18 14 8.1387 -7.8639 -4.5035 19 1 7.5718 -8.9880 -3.7159 20 1 9.2868 -8.3529 -5.3083 21 1 8.6002 -6.7961 -3.5804 22 6 3.0782 -3.0516 -1.4807 23 8 2.5881 -4.1067 -1.1397 24 1 -0.5401 -0.9354 0.0004 25 1 -0.5400 0.9353 0.0004 26 1 2.2450 1.6198 -1.0277 27 1 1.4744 2.0647 0.5139 28 1 3.0159 1.1748 0.5138 29 1 1.4386 -2.0856 0.4335 30 1 2.9742 -1.1990 0.5889 31 1 3.4045 0.1738 -2.0817 32 1 5.1411 -4.7078 -1.4580 33 1 6.3038 -3.5099 -2.0754 34 1 4.1316 -4.8914 -3.7154 35 1 5.2944 -3.6934 -4.3328 36 1 7.1689 -5.1920 -3.7079 37 1 6.0057 -6.3896 -3.0907 38 1 7.2664 -8.3846 -7.1583 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601070161.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:17:02 Heat of formation + Delta-G solvation = -41.635623 kcal Electronic energy + Delta-G solvation = -20043.034027 eV Core-core repulsion = 16886.410458 eV Total energy + Delta-G solvation = -3156.623568 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.43953 -38.56892 -37.42450 -35.86847 -35.22753 -33.34213 -31.53079 -30.06286 -27.74930 -27.62490 -25.11149 -23.61539 -22.38027 -20.59981 -20.14838 -18.93019 -18.09255 -17.03211 -16.79044 -16.28545 -15.63443 -15.46537 -15.23018 -14.45951 -14.28630 -14.18798 -14.05849 -14.02482 -13.79092 -13.09433 -12.73177 -12.27734 -12.18127 -11.94787 -11.78470 -11.64581 -11.30832 -10.89785 -10.80879 -10.29146 -10.15039 -9.97569 -9.80777 -9.74617 -9.40700 -9.31494 -9.14470 -8.52001 -6.02261 -4.00666 1.50772 1.80951 2.25519 3.01749 3.05586 3.33317 3.40450 3.43995 3.81310 4.37180 4.43929 4.46988 4.47242 4.70096 5.04519 5.09499 5.19475 5.27246 5.31633 5.43175 5.50206 5.53088 5.55043 5.61195 5.66459 5.86887 6.15448 6.37063 6.39523 6.55308 6.65890 6.81070 7.09109 7.25334 7.36996 7.39775 7.79058 8.12641 8.55219 9.02043 9.59479 11.11236 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.039513 B = 0.003772 C = 0.003664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.464230 B = 7421.542821 C = 7640.982348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.131 4.131 3 C -0.122 4.122 4 C -0.085 4.085 5 C 0.099 3.901 6 H 0.127 0.873 7 N -0.727 5.727 8 C 0.701 3.299 9 O -0.537 6.537 10 N -0.571 5.571 11 C 0.113 3.887 12 C -0.116 4.116 13 C -0.009 4.009 14 C -0.520 4.520 15 H 0.071 0.929 16 C 0.066 3.934 17 N -0.904 5.904 18 Si 0.881 3.119 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.264 1.264 22 C 0.523 3.477 23 O -0.464 6.464 24 H 0.102 0.898 25 H 0.100 0.900 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.097 0.903 30 H 0.083 0.917 31 H 0.436 0.564 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.020 0.980 37 H 0.015 0.985 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.501 17.533 16.328 26.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.131 4.131 3 C -0.179 4.179 4 C -0.123 4.123 5 C -0.010 4.010 6 H 0.144 0.856 7 N -0.392 5.392 8 C 0.401 3.599 9 O -0.410 6.410 10 N -0.316 5.316 11 C -0.007 4.007 12 C -0.154 4.154 13 C -0.047 4.047 14 C -0.558 4.558 15 H 0.089 0.911 16 C -0.135 4.135 17 N -0.543 5.543 18 Si 0.708 3.292 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.189 1.189 22 C 0.309 3.691 23 O -0.333 6.333 24 H 0.120 0.880 25 H 0.119 0.881 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.115 0.885 30 H 0.101 0.899 31 H 0.280 0.720 32 H 0.109 0.891 33 H 0.112 0.888 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.038 0.962 37 H 0.033 0.967 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.042 16.938 16.129 25.864 hybrid contribution 0.566 -0.039 0.315 0.649 sum -10.476 16.898 16.444 25.801 Atomic orbital electron populations 1.23824 0.95108 1.02377 1.00696 1.21586 0.95340 0.95092 1.01089 1.20919 1.00429 0.94386 1.02125 1.20895 1.01704 0.96246 0.93455 1.22092 0.93486 0.87557 0.97879 0.85596 1.45605 1.13974 1.10387 1.69255 1.15932 0.84246 0.81143 0.78555 1.91028 1.26342 1.75549 1.48111 1.46569 1.16670 1.09344 1.59053 1.22099 0.90715 0.87227 1.00651 1.21825 1.01431 0.99505 0.92674 1.19501 0.94193 0.93163 0.97888 1.21078 1.18883 1.18309 0.97509 0.91070 1.25029 0.97193 0.96263 0.95018 1.69914 1.39611 1.27272 1.17457 0.86762 0.81687 0.79643 0.81120 1.20243 1.21369 1.18895 1.20763 0.81742 0.90576 0.76025 1.90816 1.67456 1.29584 1.45424 0.88001 0.88138 0.91476 0.91548 0.91552 0.88496 0.89872 0.71973 0.89068 0.88836 0.92249 0.91947 0.96192 0.96706 0.92718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.00 13.89 29.01 0.40 -0.60 16 2 C -0.13 -0.77 5.22 -101.07 -0.53 -1.30 16 3 C -0.12 -0.60 9.44 36.01 0.34 -0.26 16 4 C -0.08 -0.59 5.13 -27.88 -0.14 -0.74 16 5 C 0.10 0.88 3.63 -68.20 -0.25 0.64 16 6 H 0.13 0.93 8.14 -51.93 -0.42 0.51 16 7 N -0.73 -6.98 6.01 -59.19 -0.36 -7.34 16 8 C 0.70 10.05 8.62 -88.02 -0.76 9.29 16 9 O -0.54 -9.71 17.48 5.33 0.09 -9.62 16 10 N -0.57 -8.47 2.60 -120.73 -0.31 -8.78 16 11 C 0.11 1.89 5.70 -4.04 -0.02 1.87 16 12 C -0.12 -2.39 5.48 -26.73 -0.15 -2.53 16 13 C -0.01 -0.23 4.04 -27.89 -0.11 -0.34 16 14 C -0.52 -15.20 9.66 -34.44 -0.33 -15.54 16 15 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 16 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 17 N -0.90 -28.40 13.96 55.43 0.77 -27.62 16 18 Si 0.88 22.02 27.47 -169.99 -4.67 17.35 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 21 H -0.26 -6.31 6.54 56.52 0.37 -5.94 16 22 C 0.52 6.93 7.65 -10.55 -0.08 6.85 16 23 O -0.46 -7.38 17.76 5.60 0.10 -7.28 16 24 H 0.10 0.53 7.99 -52.48 -0.42 0.11 16 25 H 0.10 0.46 8.04 -52.49 -0.42 0.04 16 26 H 0.07 0.28 7.30 -51.93 -0.38 -0.10 16 27 H 0.07 0.29 8.06 -51.93 -0.42 -0.13 16 28 H 0.07 0.34 8.08 -51.93 -0.42 -0.08 16 29 H 0.10 0.67 7.99 -51.93 -0.41 0.26 16 30 H 0.08 0.60 8.10 -51.93 -0.42 0.18 16 31 H 0.44 3.16 7.62 -40.82 -0.31 2.85 16 32 H 0.09 1.44 8.00 -51.93 -0.42 1.03 16 33 H 0.09 1.54 7.85 -51.93 -0.41 1.13 16 34 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 36 H 0.02 0.48 7.20 -51.93 -0.37 0.10 16 37 H 0.01 0.35 7.57 -51.93 -0.39 -0.05 16 38 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 324.49 15.07 4.89 4.89 Total: -1.00 -34.55 324.49 -6.86 -41.41 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: -5.65 Total: -2.22 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: -1.73 Total: -0.79 kcal Atomic # 7 Polarization: -43.85 SS G_CDS: 0.10 Total: -43.75 kcal Atomic # 8 Polarization: -17.09 SS G_CDS: 0.19 Total: -16.90 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.67 Total: 17.35 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -34.55 -6.86 -41.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601070161.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.224 kcal (2) G-P(sol) polarization free energy of solvation -34.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds