Wall clock time and date at job start Mon Mar 30 2020 05:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50701 * 119.99743 * 2 1 4 4 C 1.50702 * 119.99803 * 180.02562 * 2 1 3 5 5 C 1.52999 * 109.46813 * 95.00044 * 4 2 1 6 6 H 1.09001 * 110.53340 * 307.82242 * 5 4 2 7 7 N 1.47311 * 110.73349 * 70.74722 * 5 4 2 8 8 C 1.34525 * 106.61678 * 118.36786 * 7 5 4 9 9 O 1.21538 * 123.77354 * 180.20953 * 8 7 5 10 10 N 1.33795 * 112.46280 * 0.37910 * 8 7 5 11 11 C 1.46499 * 124.17916 * 179.86693 * 10 8 7 12 12 C 1.53000 * 109.46840 * 269.69804 * 11 10 8 13 13 C 1.52997 * 109.47060 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.47466 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99890 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00428 * 179.97438 * 14 13 12 17 17 N 1.31517 * 120.00362 * 180.02562 * 16 14 13 18 18 Si 1.86804 * 119.99850 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.47052 * 89.99717 * 18 16 14 20 20 H 1.48495 * 109.47307 * 209.99656 * 18 16 14 21 21 H 1.48500 * 109.47143 * 330.00164 * 18 16 14 22 22 C 1.34772 * 111.64042 * 359.60091 * 10 8 7 23 23 O 1.21228 * 127.15606 * 180.19732 * 22 10 8 24 24 H 1.08009 * 120.00093 * 180.02562 * 1 2 3 25 25 H 1.08000 * 120.00196 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.46786 * 270.00231 * 3 2 1 27 27 H 1.08997 * 109.46865 * 30.00520 * 3 2 1 28 28 H 1.09000 * 109.46792 * 150.00096 * 3 2 1 29 29 H 1.08998 * 109.47161 * 334.99410 * 4 2 1 30 30 H 1.08998 * 109.46341 * 214.99566 * 4 2 1 31 31 H 0.96996 * 126.68785 * 298.61682 * 7 5 4 32 32 H 1.09001 * 109.46813 * 149.70078 * 11 10 8 33 33 H 1.08992 * 109.47397 * 29.70140 * 11 10 8 34 34 H 1.09002 * 109.47398 * 300.00326 * 12 11 10 35 35 H 1.09001 * 109.47194 * 60.00507 * 12 11 10 36 36 H 1.09002 * 109.47153 * 300.00319 * 13 12 11 37 37 H 1.08998 * 109.47533 * 59.99948 * 13 12 11 38 38 H 0.96994 * 119.99814 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 6 2.4273 -1.6833 -1.4378 6 1 1.5433 -1.6590 -2.0750 7 7 3.4708 -0.7868 -1.9647 8 6 4.5353 -1.5594 -2.2467 9 8 5.5794 -1.1322 -2.6988 10 7 4.3150 -2.8513 -1.9773 11 6 5.2988 -3.9158 -2.1900 12 6 5.1367 -4.4855 -3.6007 13 6 6.1637 -5.5976 -3.8227 14 6 6.0045 -6.1583 -5.2124 15 1 5.2469 -5.7610 -5.8715 16 6 6.8268 -7.1780 -5.6428 17 7 6.6882 -7.6670 -6.8558 18 14 8.1387 -7.8639 -4.5035 19 1 7.5718 -8.9880 -3.7159 20 1 9.2868 -8.3529 -5.3083 21 1 8.6002 -6.7961 -3.5804 22 6 3.0782 -3.0516 -1.4807 23 8 2.5881 -4.1067 -1.1397 24 1 -0.5401 -0.9354 0.0004 25 1 -0.5400 0.9353 0.0004 26 1 2.2450 1.6198 -1.0277 27 1 1.4744 2.0647 0.5139 28 1 3.0159 1.1748 0.5138 29 1 1.4386 -2.0856 0.4335 30 1 2.9742 -1.1990 0.5889 31 1 3.4045 0.1738 -2.0817 32 1 5.1411 -4.7078 -1.4580 33 1 6.3038 -3.5099 -2.0754 34 1 4.1316 -4.8914 -3.7154 35 1 5.2944 -3.6934 -4.3328 36 1 7.1689 -5.1920 -3.7079 37 1 6.0057 -6.3896 -3.0907 38 1 7.2664 -8.3846 -7.1583 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601070161.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:17:01 Heat of formation + Delta-G solvation = -65.601074 kcal Electronic energy + Delta-G solvation = -20044.073247 eV Core-core repulsion = 16886.410458 eV Total energy + Delta-G solvation = -3157.662788 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.50832 -39.72717 -38.20264 -37.16550 -36.33255 -35.05895 -33.38856 -30.77161 -29.46222 -28.02682 -26.17884 -25.17088 -23.43192 -22.29612 -21.44944 -19.50986 -19.12919 -18.86840 -18.05624 -17.42111 -16.74498 -16.52879 -16.12591 -15.98442 -15.81592 -15.32352 -15.10645 -14.88957 -14.78221 -14.43638 -14.01972 -13.54820 -13.47400 -13.09544 -12.65558 -12.62055 -12.51598 -12.37367 -12.05285 -11.86561 -11.76294 -11.62636 -11.45356 -11.23925 -10.83757 -10.77962 -10.56097 -9.89265 -8.30931 -6.36399 0.50974 1.13147 1.35147 1.36897 1.39506 1.51589 1.91240 2.14101 2.36318 2.88419 3.04332 3.64744 3.83028 3.92903 3.98683 4.04800 4.16538 4.26256 4.39832 4.41887 4.59752 4.76120 4.83845 4.85629 4.89438 4.93565 4.94571 5.11885 5.20765 5.36957 5.47363 5.61853 5.73092 5.80346 5.95231 6.03381 6.23949 6.32545 6.70581 7.06554 7.28043 8.86178 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.039513 B = 0.003772 C = 0.003664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.464230 B = 7421.542821 C = 7640.982348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.138 4.138 3 C -0.124 4.124 4 C -0.078 4.078 5 C 0.112 3.888 6 H 0.152 0.848 7 N -0.701 5.701 8 C 0.698 3.302 9 O -0.579 6.579 10 N -0.579 5.579 11 C 0.121 3.879 12 C -0.104 4.104 13 C -0.007 4.007 14 C -0.537 4.537 15 H 0.026 0.974 16 C 0.002 3.998 17 N -0.953 5.953 18 Si 0.955 3.045 19 H -0.263 1.263 20 H -0.284 1.284 21 H -0.242 1.242 22 C 0.519 3.481 23 O -0.492 6.492 24 H 0.104 0.896 25 H 0.110 0.890 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.062 0.938 29 H 0.101 0.899 30 H 0.082 0.918 31 H 0.450 0.550 32 H 0.105 0.895 33 H 0.098 0.902 34 H 0.047 0.953 35 H 0.044 0.956 36 H 0.028 0.972 37 H 0.029 0.971 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.771 18.572 18.735 28.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.138 4.138 3 C -0.180 4.180 4 C -0.116 4.116 5 C 0.004 3.996 6 H 0.169 0.831 7 N -0.367 5.367 8 C 0.399 3.601 9 O -0.455 6.455 10 N -0.324 5.324 11 C 0.001 3.999 12 C -0.143 4.143 13 C -0.045 4.045 14 C -0.575 4.575 15 H 0.044 0.956 16 C -0.195 4.195 17 N -0.593 5.593 18 Si 0.778 3.222 19 H -0.188 1.188 20 H -0.209 1.209 21 H -0.165 1.165 22 C 0.308 3.692 23 O -0.363 6.363 24 H 0.122 0.878 25 H 0.129 0.871 26 H 0.093 0.907 27 H 0.091 0.909 28 H 0.081 0.919 29 H 0.119 0.881 30 H 0.101 0.899 31 H 0.297 0.703 32 H 0.123 0.877 33 H 0.117 0.883 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.046 0.954 37 H 0.047 0.953 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.371 18.032 18.562 28.267 hybrid contribution 0.510 -0.331 -0.504 0.790 sum -10.861 17.702 18.057 27.521 Atomic orbital electron populations 1.23985 0.95040 1.03048 0.99444 1.21545 0.95447 0.94721 1.02132 1.20953 1.00288 0.94094 1.02703 1.20862 1.01984 0.97149 0.91600 1.22227 0.93121 0.84397 0.99877 0.83103 1.45491 1.12622 1.10865 1.67682 1.16043 0.84571 0.81188 0.78333 1.91002 1.28218 1.76122 1.50199 1.46562 1.17114 1.09287 1.59392 1.21800 0.91775 0.88288 0.98082 1.21593 0.99672 0.97988 0.95044 1.19431 0.95580 0.94438 0.95006 1.21439 1.17922 1.18685 0.99483 0.95572 1.26093 0.99980 0.96556 0.96841 1.70076 1.41179 1.28215 1.19848 0.85585 0.78077 0.79568 0.79009 1.18818 1.20945 1.16480 1.21427 0.81125 0.91852 0.74842 1.90801 1.67811 1.31119 1.46554 0.87784 0.87133 0.90709 0.90871 0.91866 0.88095 0.89944 0.70274 0.87726 0.88333 0.93430 0.93743 0.95418 0.95272 0.92394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.43 13.89 67.78 0.94 -0.49 16 2 C -0.14 -1.23 5.22 -16.49 -0.09 -1.31 16 3 C -0.12 -0.88 9.44 71.24 0.67 -0.21 16 4 C -0.08 -0.89 5.13 29.85 0.15 -0.74 16 5 C 0.11 1.73 3.63 44.37 0.16 1.89 16 6 H 0.15 1.74 8.14 -2.39 -0.02 1.72 16 7 N -0.70 -12.01 6.01 -459.60 -2.76 -14.77 16 8 C 0.70 19.29 8.62 179.44 1.55 20.83 16 9 O -0.58 -20.71 17.48 -3.83 -0.07 -20.78 16 10 N -0.58 -16.60 2.60 -773.12 -2.01 -18.61 16 11 C 0.12 3.97 5.70 86.38 0.49 4.46 16 12 C -0.10 -4.34 5.48 30.59 0.17 -4.17 16 13 C -0.01 -0.32 4.04 29.85 0.12 -0.20 16 14 C -0.54 -32.29 9.66 25.60 0.25 -32.04 16 15 H 0.03 1.74 7.99 -2.91 -0.02 1.71 16 16 C 0.00 0.11 5.47 84.65 0.46 0.58 16 17 N -0.95 -61.43 13.96 21.45 0.30 -61.13 16 18 Si 0.96 44.91 27.47 68.60 1.88 46.80 16 19 H -0.26 -11.78 7.11 99.48 0.71 -11.08 16 20 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 21 H -0.24 -10.40 6.54 99.48 0.65 -9.75 16 22 C 0.52 13.04 7.65 87.94 0.67 13.72 16 23 O -0.49 -15.14 17.76 -2.87 -0.05 -15.19 16 24 H 0.10 0.79 7.99 -2.91 -0.02 0.77 16 25 H 0.11 0.68 8.04 -2.91 -0.02 0.66 16 26 H 0.07 0.41 7.30 -2.39 -0.02 0.39 16 27 H 0.07 0.43 8.06 -2.39 -0.02 0.41 16 28 H 0.06 0.50 8.08 -2.39 -0.02 0.48 16 29 H 0.10 1.15 7.99 -2.39 -0.02 1.13 16 30 H 0.08 0.99 8.10 -2.39 -0.02 0.98 16 31 H 0.45 5.38 7.62 -92.71 -0.71 4.67 16 32 H 0.10 3.14 8.00 -2.39 -0.02 3.12 16 33 H 0.10 3.14 7.85 -2.39 -0.02 3.12 16 34 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.03 1.29 7.20 -2.39 -0.02 1.27 16 37 H 0.03 1.32 7.57 -2.39 -0.02 1.30 16 38 H 0.27 15.97 8.31 -92.71 -0.77 15.20 16 Total: -1.00 -76.80 324.49 3.13 -73.67 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: 0.29 Total: 7.71 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: 5.55 Total: 2.32 kcal Atomic # 7 Polarization: -90.04 SS G_CDS: -4.48 Total: -94.52 kcal Atomic # 8 Polarization: -35.85 SS G_CDS: -0.12 Total: -35.97 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 1.88 Total: 46.80 kcal Total: -76.80 3.13 -73.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601070161.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.066 kcal (2) G-P(sol) polarization free energy of solvation -76.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds