Wall clock time and date at job start Mon Mar 30 2020 04:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86791 * 120.00158 * 2 1 4 4 H 1.48498 * 109.47295 * 269.99960 * 3 2 1 5 5 H 1.48503 * 109.47172 * 29.99720 * 3 2 1 6 6 H 1.48497 * 109.47175 * 149.99811 * 3 2 1 7 7 C 1.37878 * 119.99636 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99861 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00286 * 0.02562 * 7 2 1 10 10 N 1.46898 * 109.47203 * 174.72236 * 9 7 2 11 11 C 1.46898 * 110.99968 * 162.29896 * 10 9 7 12 12 C 1.53005 * 109.46971 * 190.00111 * 11 10 9 13 13 N 1.46505 * 109.46999 * 179.97438 * 12 11 10 14 14 C 1.33877 * 122.76433 * 269.70955 * 13 12 11 15 15 O 1.21219 * 125.39302 * 359.97438 * 14 13 12 16 16 C 1.51318 * 109.20425 * 179.84164 * 14 13 12 17 17 C 1.54230 * 103.55362 * 0.39019 * 16 14 13 18 18 C 1.33881 * 122.75694 * 89.99751 * 13 12 11 19 19 O 1.21228 * 125.39685 * 359.97438 * 18 13 12 20 20 C 1.46902 * 111.00220 * 286.24767 * 10 9 7 21 21 C 1.52999 * 117.50040 * 142.03346 * 20 10 9 22 22 C 1.52994 * 60.00247 * 252.51661 * 21 20 10 23 23 H 0.97007 * 120.00059 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.47360 * 294.72674 * 9 7 2 25 25 H 1.09001 * 109.46969 * 54.72627 * 9 7 2 26 26 H 1.09000 * 109.46823 * 309.99607 * 11 10 9 27 27 H 1.08997 * 109.47539 * 69.99713 * 11 10 9 28 28 H 1.09000 * 109.46936 * 299.99427 * 12 11 10 29 29 H 1.09001 * 109.47146 * 59.99941 * 12 11 10 30 30 H 1.09001 * 110.79542 * 241.77783 * 16 14 13 31 31 H 1.09002 * 110.40999 * 118.81440 * 16 14 13 32 32 H 1.09009 * 110.60341 * 241.25693 * 17 16 14 33 33 H 1.08997 * 110.60394 * 118.29767 * 17 16 14 34 34 H 1.08998 * 115.55257 * 287.74878 * 20 10 9 35 35 H 1.08997 * 117.49746 * 0.02562 * 21 20 10 36 36 H 1.09007 * 117.49836 * 145.02105 * 21 20 10 37 37 H 1.09003 * 117.49831 * 252.51359 * 22 21 20 38 38 H 1.09000 * 117.52267 * 107.48507 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5466 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2005 -3.6128 -0.1262 11 6 1.5823 -4.8809 0.2834 12 6 2.6575 -5.9654 0.3776 13 7 2.0411 -7.2299 0.7867 14 6 1.9143 -7.5926 2.0692 15 8 2.2824 -6.9409 3.0228 16 6 1.2358 -8.9433 2.1398 17 6 0.9990 -9.3066 0.6597 18 6 1.5633 -8.1204 -0.0914 19 8 1.5798 -7.9960 -1.2972 20 6 2.7276 -3.7021 -1.4945 21 6 4.2013 -4.0782 -1.6607 22 6 3.7428 -2.6438 -1.9308 23 1 -0.4850 0.8401 0.0004 24 1 0.6966 -2.5987 0.9338 25 1 0.5556 -2.5173 -0.8387 26 1 1.1065 -4.7556 1.2561 27 1 0.8335 -5.1745 -0.4522 28 1 3.1333 -6.0907 -0.5951 29 1 3.4063 -5.6718 1.1133 30 1 0.2883 -8.8729 2.6739 31 1 1.8914 -9.6737 2.6140 32 1 -0.0665 -9.4170 0.4576 33 1 1.5366 -10.2178 0.3977 34 1 2.0269 -4.0672 -2.2454 35 1 4.7796 -4.2598 -0.7548 36 1 4.4704 -4.6911 -2.5210 37 1 3.7101 -2.3129 -2.9689 38 1 4.0192 -1.8811 -1.2029 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000685996467.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:22 Heat of formation + Delta-G solvation = -27.888162 kcal Electronic energy + Delta-G solvation = -20505.256969 eV Core-core repulsion = 17349.229536 eV Total energy + Delta-G solvation = -3156.027434 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.88809 -38.59082 -37.84452 -35.89209 -34.29004 -33.30060 -32.15560 -28.94388 -26.32934 -26.14716 -22.80015 -22.46436 -22.22681 -21.63881 -19.52253 -19.37978 -17.27685 -17.08609 -16.49843 -16.38280 -15.02106 -14.87799 -14.76595 -14.45047 -14.28887 -14.07688 -14.03861 -13.42721 -13.03635 -12.82271 -12.75418 -12.07040 -11.87898 -11.63518 -11.21150 -11.00631 -10.89913 -10.78898 -10.69289 -10.56379 -10.09144 -9.97472 -9.80104 -9.52233 -9.12323 -9.08990 -8.39273 -7.37759 -5.99631 -3.99683 1.42478 2.48034 2.65145 3.33516 3.39792 3.43668 3.90017 4.03938 4.21559 4.42563 4.54951 4.57796 4.76559 5.14798 5.23425 5.30852 5.33392 5.34414 5.37961 5.49618 5.65064 5.71167 5.81362 5.96945 6.14817 6.18872 6.33098 6.39789 6.67995 6.83834 6.96850 7.19076 7.25379 7.36468 7.71716 7.84977 8.08811 8.16435 8.52427 9.06541 9.63168 11.11380 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.026830 B = 0.004745 C = 0.004422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.361371 B = 5899.659019 C = 6330.787184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.054 3.946 3 Si 0.896 3.104 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.273 1.273 7 C -0.498 4.498 8 H 0.069 0.931 9 C 0.197 3.803 10 N -0.506 5.506 11 C 0.050 3.950 12 C 0.102 3.898 13 N -0.572 5.572 14 C 0.522 3.478 15 O -0.476 6.476 16 C -0.157 4.157 17 C -0.157 4.157 18 C 0.523 3.477 19 O -0.481 6.481 20 C 0.023 3.977 21 C -0.190 4.190 22 C -0.149 4.149 23 H 0.260 0.740 24 H 0.026 0.974 25 H -0.002 1.002 26 H 0.072 0.928 27 H 0.027 0.973 28 H 0.095 0.905 29 H 0.098 0.902 30 H 0.120 0.880 31 H 0.118 0.882 32 H 0.119 0.881 33 H 0.118 0.882 34 H 0.071 0.929 35 H 0.092 0.908 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.948 -19.126 1.141 19.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.147 4.147 3 Si 0.724 3.276 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.198 1.198 7 C -0.537 4.537 8 H 0.087 0.913 9 C 0.073 3.927 10 N -0.231 5.231 11 C -0.079 4.079 12 C -0.019 4.019 13 N -0.315 5.315 14 C 0.311 3.689 15 O -0.346 6.346 16 C -0.197 4.197 17 C -0.197 4.197 18 C 0.312 3.688 19 O -0.352 6.352 20 C -0.086 4.086 21 C -0.227 4.227 22 C -0.186 4.186 23 H 0.070 0.930 24 H 0.044 0.956 25 H 0.016 0.984 26 H 0.091 0.909 27 H 0.045 0.955 28 H 0.114 0.886 29 H 0.117 0.883 30 H 0.138 0.862 31 H 0.136 0.864 32 H 0.137 0.863 33 H 0.136 0.864 34 H 0.089 0.911 35 H 0.110 0.890 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 3.401 -18.438 1.326 18.796 hybrid contribution -0.441 0.857 -0.593 1.131 sum 2.960 -17.582 0.734 17.844 Atomic orbital electron populations 1.69961 1.06071 1.26674 1.51394 1.24983 0.94832 0.99234 0.95661 0.86530 0.79833 0.83269 0.78012 1.20748 1.21351 1.19756 1.21223 0.93613 0.89507 1.49361 0.91292 1.19723 0.89750 0.87125 0.96123 1.61874 1.38647 1.02401 1.20201 1.22213 0.94573 0.90570 1.00569 1.21939 0.96725 0.80408 1.02808 1.46827 1.54557 1.20782 1.09317 1.20820 0.77886 0.88209 0.82029 1.90809 1.46879 1.58324 1.38625 1.22477 1.04057 0.95425 0.97737 1.22473 1.05039 0.98281 0.93906 1.20822 0.76524 0.84653 0.86835 1.90788 1.53412 1.78256 1.12789 1.22108 0.90672 1.04740 0.91118 1.23075 0.97782 0.99755 1.02134 1.23050 1.01882 0.92215 1.01487 0.93014 0.95637 0.98401 0.90917 0.95474 0.88627 0.88319 0.86199 0.86370 0.86273 0.86358 0.91137 0.89000 0.90036 0.89994 0.86734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.97 13.29 55.43 0.74 -26.23 16 2 C 0.05 1.52 5.46 -17.82 -0.10 1.43 16 3 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.50 -13.87 8.04 -34.44 -0.28 -14.15 16 8 H 0.07 1.88 5.49 -52.49 -0.29 1.59 16 9 C 0.20 5.20 4.75 -4.98 -0.02 5.18 16 10 N -0.51 -11.08 4.58 -228.08 -1.04 -12.12 16 11 C 0.05 0.95 5.27 -3.82 -0.02 0.93 16 12 C 0.10 1.61 5.31 -4.04 -0.02 1.58 16 13 N -0.57 -7.46 2.55 -115.33 -0.29 -7.75 16 14 C 0.52 6.25 8.08 -11.08 -0.09 6.16 16 15 O -0.48 -7.58 17.47 5.61 0.10 -7.48 16 16 C -0.16 -0.97 7.03 -26.94 -0.19 -1.16 16 17 C -0.16 -0.96 7.03 -26.94 -0.19 -1.15 16 18 C 0.52 6.17 8.08 -11.08 -0.09 6.08 16 19 O -0.48 -7.45 17.48 5.60 0.10 -7.35 16 20 C 0.02 0.46 4.27 -67.71 -0.29 0.17 16 21 C -0.19 -3.16 8.92 -26.73 -0.24 -3.40 16 22 C -0.15 -2.87 9.39 -26.73 -0.25 -3.12 16 23 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 24 H 0.03 0.72 7.77 -51.93 -0.40 0.31 16 25 H 0.00 -0.06 8.03 -51.93 -0.42 -0.47 16 26 H 0.07 1.44 7.84 -51.93 -0.41 1.03 16 27 H 0.03 0.53 8.12 -51.93 -0.42 0.11 16 28 H 0.10 1.51 6.07 -51.93 -0.32 1.20 16 29 H 0.10 1.61 7.82 -51.93 -0.41 1.20 16 30 H 0.12 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.12 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.12 0.54 8.14 -51.92 -0.42 0.12 16 33 H 0.12 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 35 H 0.09 1.51 8.14 -51.93 -0.42 1.08 16 36 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 38 H 0.11 2.44 5.63 -51.93 -0.29 2.15 16 LS Contribution 318.06 15.07 4.79 4.79 Total: -1.00 -33.60 318.06 -7.88 -41.48 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -5.47 Total: -0.60 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: -1.78 Total: -1.45 kcal Atomic # 7 Polarization: -45.51 SS G_CDS: -0.60 Total: -46.11 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: 0.20 Total: -14.83 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -33.60 -7.88 -41.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685996467.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.592 kcal (2) G-P(sol) polarization free energy of solvation -33.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds