Wall clock time and date at job start Mon Mar 30 2020 04:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31009 * 1 3 3 Si 1.86802 * 120.00415 * 2 1 4 4 H 1.48502 * 109.46930 * 270.00335 * 3 2 1 5 5 H 1.48500 * 109.46724 * 29.99821 * 3 2 1 6 6 H 1.48493 * 109.47432 * 149.99734 * 3 2 1 7 7 C 1.39587 * 119.99860 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99970 * 0.02562 * 7 2 1 9 9 N 1.36124 * 119.99947 * 179.97438 * 7 2 1 10 10 C 1.34776 * 119.99714 * 180.02562 * 9 7 2 11 11 O 1.21504 * 120.00079 * 0.02562 * 10 9 7 12 12 C 1.48829 * 119.99959 * 180.02562 * 10 9 7 13 13 O 1.21445 * 119.99741 * 359.72565 * 12 10 9 14 14 N 1.34781 * 120.00318 * 180.02562 * 12 10 9 15 15 C 1.47419 * 125.64404 * 354.63049 * 14 12 10 16 16 C 1.54915 * 104.83250 * 204.08951 * 15 14 12 17 17 C 1.55156 * 101.57790 * 322.99041 * 16 15 14 18 18 C 1.47018 * 125.64970 * 174.31959 * 14 12 10 19 19 H 1.09001 * 109.88326 * 59.55829 * 18 14 12 20 20 C 1.53007 * 109.88334 * 298.39736 * 18 14 12 21 21 C 1.53777 * 113.61152 * 284.33225 * 20 18 14 22 22 C 1.53783 * 87.08241 * 220.01799 * 21 20 18 23 23 C 1.53774 * 113.61454 * 186.83523 * 20 18 14 24 24 H 0.97006 * 119.99592 * 359.97438 * 1 2 3 25 25 H 0.97000 * 120.00123 * 0.02562 * 9 7 2 26 26 H 1.08998 * 110.37233 * 322.93016 * 15 14 12 27 27 H 1.09005 * 110.36646 * 85.25468 * 15 14 12 28 28 H 1.08995 * 111.00342 * 81.05882 * 16 15 14 29 29 H 1.09000 * 111.00665 * 204.92119 * 16 15 14 30 30 H 1.09007 * 110.72245 * 153.86171 * 17 16 15 31 31 H 1.08998 * 110.72724 * 276.95950 * 17 16 15 32 32 H 1.09000 * 112.84845 * 55.63153 * 20 18 14 33 33 H 1.09001 * 113.61801 * 334.56026 * 21 20 18 34 34 H 1.09006 * 113.61815 * 105.47246 * 21 20 18 35 35 H 1.09002 * 113.61693 * 270.89018 * 22 21 20 36 36 H 1.08997 * 113.69589 * 139.98997 * 22 21 20 37 37 H 1.09008 * 113.61103 * 254.52691 * 23 20 18 38 38 H 1.08996 * 113.61919 * 25.42576 * 23 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2442 1.6177 0.0000 4 1 2.4917 2.0464 -1.4001 5 1 1.4416 2.6526 0.7000 6 1 3.5417 1.4401 0.7000 7 6 2.0080 -1.2089 0.0005 8 1 1.4679 -2.1442 0.0005 9 7 3.3692 -1.2089 0.0000 10 6 4.0430 -2.3761 0.0000 11 8 3.4355 -3.4284 0.0000 12 6 5.5313 -2.3762 0.0000 13 8 6.1386 -1.3245 -0.0050 14 7 6.2052 -3.5435 -0.0005 15 6 5.6018 -4.8839 0.1110 16 6 6.7314 -5.7816 0.6748 17 6 7.9785 -5.1999 -0.0420 18 6 7.6632 -3.6911 -0.1188 19 1 8.1564 -3.1689 0.7010 20 6 8.1364 -3.1254 -1.4594 21 6 7.8272 -4.0390 -2.6571 22 6 9.2148 -3.6620 -3.2024 23 6 9.6247 -3.3846 -1.7464 24 1 -0.4850 0.8401 0.0004 25 1 3.8543 -0.3689 -0.0004 26 1 4.7555 -4.8631 0.7976 27 1 5.2872 -5.2410 -0.8696 28 1 6.8153 -5.6713 1.7559 29 1 6.5747 -6.8250 0.4009 30 1 8.8793 -5.3785 0.5454 31 1 8.0814 -5.6228 -1.0413 32 1 7.8366 -2.0884 -1.6107 33 1 7.7342 -5.0919 -2.3906 34 1 7.0034 -3.6837 -3.2762 35 1 9.2096 -2.7719 -3.8316 36 1 9.7493 -4.4971 -3.6550 37 1 10.2522 -2.5008 -1.6303 38 1 10.0232 -4.2584 -1.2310 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688956728.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:35 Heat of formation + Delta-G solvation = -39.354160 kcal Electronic energy + Delta-G solvation = -20887.661829 eV Core-core repulsion = 17731.137192 eV Total energy + Delta-G solvation = -3156.524637 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.53994 -38.89921 -37.23088 -36.51409 -34.24211 -31.95489 -31.21236 -29.53397 -26.12530 -25.67421 -24.88957 -23.49799 -21.75617 -20.93457 -19.30901 -18.72760 -18.14004 -16.65363 -16.38603 -16.07179 -15.54598 -15.06583 -14.51231 -14.28129 -13.66878 -13.46568 -13.12423 -13.09291 -12.97326 -12.67870 -12.54367 -12.41816 -12.14206 -11.60775 -11.28910 -11.18135 -11.11127 -10.82780 -10.67154 -10.54417 -10.40821 -10.27714 -10.08521 -9.99306 -9.74237 -8.42089 -8.29427 -8.25806 -6.57106 -3.98627 2.33215 3.05106 3.07627 3.11239 3.16504 3.97040 4.15682 4.40535 4.58787 4.60705 4.77419 4.77976 4.80657 4.92616 5.00414 5.14453 5.40161 5.42898 5.55752 5.59203 5.65367 5.69487 5.78747 5.83825 5.89000 5.92732 5.99244 6.14648 6.22777 6.28761 6.32622 6.49782 6.71765 7.28847 7.76219 7.90797 8.22540 8.53128 8.76861 9.21451 9.63890 10.53127 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.026875 B = 0.005382 C = 0.004844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.624838 B = 5201.744632 C = 5779.434232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.053 3.947 3 Si 0.874 3.126 4 H -0.265 1.265 5 H -0.271 1.271 6 H -0.260 1.260 7 C -0.308 4.308 8 H 0.127 0.873 9 N -0.529 5.529 10 C 0.409 3.591 11 O -0.573 6.573 12 C 0.528 3.472 13 O -0.551 6.551 14 N -0.593 5.593 15 C 0.109 3.891 16 C -0.138 4.138 17 C -0.137 4.137 18 C 0.147 3.853 19 H 0.074 0.926 20 C -0.120 4.120 21 C -0.141 4.141 22 C -0.141 4.141 23 C -0.133 4.133 24 H 0.281 0.719 25 H 0.383 0.617 26 H 0.099 0.901 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.064 0.936 35 H 0.077 0.923 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.117 -8.127 -2.084 19.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C -0.155 4.155 3 Si 0.699 3.301 4 H -0.189 1.189 5 H -0.195 1.195 6 H -0.185 1.185 7 C -0.438 4.438 8 H 0.145 0.855 9 N -0.166 5.166 10 C 0.193 3.807 11 O -0.459 6.459 12 C 0.315 3.685 13 O -0.429 6.429 14 N -0.327 5.327 15 C -0.013 4.013 16 C -0.176 4.176 17 C -0.174 4.174 18 C 0.043 3.957 19 H 0.092 0.908 20 C -0.140 4.140 21 C -0.178 4.178 22 C -0.178 4.178 23 C -0.171 4.171 24 H 0.092 0.908 25 H 0.218 0.782 26 H 0.117 0.883 27 H 0.086 0.914 28 H 0.091 0.909 29 H 0.100 0.900 30 H 0.095 0.905 31 H 0.105 0.895 32 H 0.117 0.883 33 H 0.107 0.893 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 16.773 -8.050 -2.078 18.721 hybrid contribution 0.490 1.402 -0.011 1.486 sum 17.263 -6.648 -2.088 18.617 Atomic orbital electron populations 1.69441 1.06082 1.28561 1.44764 1.25208 0.95521 0.98508 0.96274 0.86699 0.80454 0.83168 0.79769 1.18945 1.19545 1.18463 1.19542 0.79091 0.97032 1.48089 0.85525 1.41815 1.07547 1.06849 1.60427 1.18793 0.86413 0.85244 0.90235 1.90583 1.68718 1.30102 1.56454 1.20357 0.89446 0.82254 0.76436 1.90664 1.70846 1.30715 1.50636 1.48158 1.06501 1.06346 1.71707 1.22451 0.96188 0.80547 1.02140 1.22881 0.94796 0.99453 1.00485 1.22923 0.98486 0.93998 1.02020 1.21465 0.81203 0.95873 0.97125 0.90823 1.22903 0.95952 1.00938 0.94161 1.23095 0.97187 1.00139 0.97355 1.22780 0.97275 1.01360 0.96389 1.22919 0.95878 1.01651 0.96626 0.90835 0.78221 0.88275 0.91436 0.90866 0.90026 0.90457 0.89515 0.88251 0.89310 0.91683 0.90434 0.91678 0.91628 0.89986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.84 13.94 55.53 0.77 -23.07 16 2 C 0.05 1.42 5.51 -17.40 -0.10 1.33 16 3 Si 0.87 19.63 27.74 -169.99 -4.72 14.92 16 4 H -0.26 -5.83 7.11 56.52 0.40 -5.42 16 5 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 6 H -0.26 -5.69 6.53 56.52 0.37 -5.32 16 7 C -0.31 -8.66 10.16 -15.14 -0.15 -8.81 16 8 H 0.13 3.95 7.37 -52.48 -0.39 3.56 16 9 N -0.53 -13.58 5.06 -11.59 -0.06 -13.64 16 10 C 0.41 10.06 7.78 -11.88 -0.09 9.96 16 11 O -0.57 -14.92 13.47 5.36 0.07 -14.85 16 12 C 0.53 11.35 7.63 -11.87 -0.09 11.26 16 13 O -0.55 -12.48 15.79 5.41 0.09 -12.39 16 14 N -0.59 -10.29 3.06 -163.74 -0.50 -10.80 16 15 C 0.11 1.68 5.86 -2.53 -0.01 1.66 16 16 C -0.14 -1.49 7.09 -24.58 -0.17 -1.67 16 17 C -0.14 -1.38 5.13 -24.89 -0.13 -1.50 16 18 C 0.15 2.01 2.96 -66.95 -0.20 1.81 16 19 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 20 C -0.12 -1.59 3.59 -89.81 -0.32 -1.91 16 21 C -0.14 -1.66 7.34 -25.92 -0.19 -1.85 16 22 C -0.14 -1.39 8.08 -25.92 -0.21 -1.60 16 23 C -0.13 -1.34 7.44 -25.92 -0.19 -1.53 16 24 H 0.28 7.19 8.30 -40.82 -0.34 6.85 16 25 H 0.38 9.31 5.22 -40.82 -0.21 9.10 16 26 H 0.10 1.76 6.50 -51.93 -0.34 1.42 16 27 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.09 0.80 4.95 -51.93 -0.26 0.54 16 32 H 0.10 1.61 7.18 -51.93 -0.37 1.24 16 33 H 0.09 0.94 5.38 -51.93 -0.28 0.66 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 38 H 0.08 0.70 7.15 -51.93 -0.37 0.33 16 LS Contribution 303.69 15.07 4.58 4.58 Total: -1.00 -30.56 303.69 -6.82 -37.38 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -5.19 Total: 10.71 kcal Atomic # 6 Polarization: 9.02 SS G_CDS: -1.86 Total: 7.16 kcal Atomic # 7 Polarization: -47.72 SS G_CDS: 0.21 Total: -47.50 kcal Atomic # 8 Polarization: -27.40 SS G_CDS: 0.16 Total: -27.24 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -4.72 Total: 14.92 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.56 -6.82 -37.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688956728.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.970 kcal (2) G-P(sol) polarization free energy of solvation -30.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds