Wall clock time and date at job start Mon Mar 30 2020 04:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31009 * 1 3 3 Si 1.86802 * 120.00415 * 2 1 4 4 H 1.48502 * 109.46930 * 270.00335 * 3 2 1 5 5 H 1.48500 * 109.46724 * 29.99821 * 3 2 1 6 6 H 1.48493 * 109.47432 * 149.99734 * 3 2 1 7 7 C 1.39587 * 119.99860 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99970 * 0.02562 * 7 2 1 9 9 N 1.36124 * 119.99947 * 179.97438 * 7 2 1 10 10 C 1.34776 * 119.99714 * 180.02562 * 9 7 2 11 11 O 1.21504 * 120.00079 * 0.02562 * 10 9 7 12 12 C 1.48829 * 119.99959 * 180.02562 * 10 9 7 13 13 O 1.21445 * 119.99741 * 359.72565 * 12 10 9 14 14 N 1.34781 * 120.00318 * 180.02562 * 12 10 9 15 15 C 1.47419 * 125.64404 * 354.63049 * 14 12 10 16 16 C 1.54915 * 104.83250 * 204.08951 * 15 14 12 17 17 C 1.55156 * 101.57790 * 322.99041 * 16 15 14 18 18 C 1.47018 * 125.64970 * 174.31959 * 14 12 10 19 19 H 1.09001 * 109.88326 * 59.55829 * 18 14 12 20 20 C 1.53007 * 109.88334 * 298.39736 * 18 14 12 21 21 C 1.53777 * 113.61152 * 284.33225 * 20 18 14 22 22 C 1.53783 * 87.08241 * 220.01799 * 21 20 18 23 23 C 1.53774 * 113.61454 * 186.83523 * 20 18 14 24 24 H 0.97006 * 119.99592 * 359.97438 * 1 2 3 25 25 H 0.97000 * 120.00123 * 0.02562 * 9 7 2 26 26 H 1.08998 * 110.37233 * 322.93016 * 15 14 12 27 27 H 1.09005 * 110.36646 * 85.25468 * 15 14 12 28 28 H 1.08995 * 111.00342 * 81.05882 * 16 15 14 29 29 H 1.09000 * 111.00665 * 204.92119 * 16 15 14 30 30 H 1.09007 * 110.72245 * 153.86171 * 17 16 15 31 31 H 1.08998 * 110.72724 * 276.95950 * 17 16 15 32 32 H 1.09000 * 112.84845 * 55.63153 * 20 18 14 33 33 H 1.09001 * 113.61801 * 334.56026 * 21 20 18 34 34 H 1.09006 * 113.61815 * 105.47246 * 21 20 18 35 35 H 1.09002 * 113.61693 * 270.89018 * 22 21 20 36 36 H 1.08997 * 113.69589 * 139.98997 * 22 21 20 37 37 H 1.09008 * 113.61103 * 254.52691 * 23 20 18 38 38 H 1.08996 * 113.61919 * 25.42576 * 23 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2442 1.6177 0.0000 4 1 2.4917 2.0464 -1.4001 5 1 1.4416 2.6526 0.7000 6 1 3.5417 1.4401 0.7000 7 6 2.0080 -1.2089 0.0005 8 1 1.4679 -2.1442 0.0005 9 7 3.3692 -1.2089 0.0000 10 6 4.0430 -2.3761 0.0000 11 8 3.4355 -3.4284 0.0000 12 6 5.5313 -2.3762 0.0000 13 8 6.1386 -1.3245 -0.0050 14 7 6.2052 -3.5435 -0.0005 15 6 5.6018 -4.8839 0.1110 16 6 6.7314 -5.7816 0.6748 17 6 7.9785 -5.1999 -0.0420 18 6 7.6632 -3.6911 -0.1188 19 1 8.1564 -3.1689 0.7010 20 6 8.1364 -3.1254 -1.4594 21 6 7.8272 -4.0390 -2.6571 22 6 9.2148 -3.6620 -3.2024 23 6 9.6247 -3.3846 -1.7464 24 1 -0.4850 0.8401 0.0004 25 1 3.8543 -0.3689 -0.0004 26 1 4.7555 -4.8631 0.7976 27 1 5.2872 -5.2410 -0.8696 28 1 6.8153 -5.6713 1.7559 29 1 6.5747 -6.8250 0.4009 30 1 8.8793 -5.3785 0.5454 31 1 8.0814 -5.6228 -1.0413 32 1 7.8366 -2.0884 -1.6107 33 1 7.7342 -5.0919 -2.3906 34 1 7.0034 -3.6837 -3.2762 35 1 9.2096 -2.7719 -3.8316 36 1 9.7493 -4.4971 -3.6550 37 1 10.2522 -2.5008 -1.6303 38 1 10.0232 -4.2584 -1.2310 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688956728.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:35 Heat of formation + Delta-G solvation = -60.190306 kcal Electronic energy + Delta-G solvation = -20888.565352 eV Core-core repulsion = 17731.137192 eV Total energy + Delta-G solvation = -3157.428160 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.90226 -40.44454 -38.92421 -37.81825 -36.27034 -34.01343 -32.53031 -30.61283 -28.07205 -26.53234 -26.07341 -25.00972 -22.92692 -22.24344 -21.26375 -20.18662 -19.40313 -18.27437 -17.91948 -17.52474 -16.95288 -16.60778 -16.12553 -15.76642 -15.17597 -14.84823 -14.66455 -14.56698 -14.37292 -14.25628 -13.86886 -13.70653 -13.14508 -13.12054 -12.59553 -12.58652 -12.49660 -12.10654 -12.04478 -11.92174 -11.72137 -11.66251 -11.46974 -11.20828 -10.92384 -10.49353 -10.19424 -9.69252 -8.64711 -6.18021 0.50590 1.25091 1.28975 1.34832 1.60930 2.07042 2.25569 2.87704 3.03978 3.54372 3.61048 3.70565 3.80682 3.85597 3.95045 3.99301 4.13658 4.37026 4.43261 4.61713 4.75340 4.82523 4.92466 4.96650 5.00532 5.02626 5.10646 5.13267 5.14475 5.23844 5.29183 5.40234 5.45439 5.64959 5.71888 6.15938 6.30069 6.54420 6.84363 7.13232 7.60400 8.49975 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.026875 B = 0.005382 C = 0.004844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.624838 B = 5201.744632 C = 5779.434232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.013 3.987 3 Si 0.945 3.055 4 H -0.253 1.253 5 H -0.254 1.254 6 H -0.252 1.252 7 C -0.338 4.338 8 H 0.079 0.921 9 N -0.536 5.536 10 C 0.408 3.592 11 O -0.591 6.591 12 C 0.528 3.472 13 O -0.566 6.566 14 N -0.584 5.584 15 C 0.098 3.902 16 C -0.123 4.123 17 C -0.123 4.123 18 C 0.136 3.864 19 H 0.070 0.930 20 C -0.134 4.134 21 C -0.143 4.143 22 C -0.133 4.133 23 C -0.117 4.117 24 H 0.290 0.710 25 H 0.391 0.609 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.078 0.922 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.103 0.897 32 H 0.059 0.941 33 H 0.108 0.892 34 H 0.038 0.962 35 H 0.069 0.931 36 H 0.090 0.910 37 H 0.066 0.934 38 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.658 -8.995 -2.140 22.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.192 4.192 3 Si 0.765 3.235 4 H -0.177 1.177 5 H -0.178 1.178 6 H -0.176 1.176 7 C -0.467 4.467 8 H 0.097 0.903 9 N -0.174 5.174 10 C 0.193 3.807 11 O -0.478 6.478 12 C 0.313 3.687 13 O -0.446 6.446 14 N -0.316 5.316 15 C -0.024 4.024 16 C -0.161 4.161 17 C -0.160 4.160 18 C 0.035 3.965 19 H 0.088 0.912 20 C -0.153 4.153 21 C -0.180 4.180 22 C -0.170 4.170 23 C -0.155 4.155 24 H 0.101 0.899 25 H 0.226 0.774 26 H 0.087 0.913 27 H 0.084 0.916 28 H 0.097 0.903 29 H 0.131 0.869 30 H 0.130 0.870 31 H 0.121 0.879 32 H 0.078 0.922 33 H 0.126 0.874 34 H 0.057 0.943 35 H 0.088 0.912 36 H 0.108 0.892 37 H 0.085 0.915 38 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 20.322 -8.962 -2.135 22.313 hybrid contribution -0.612 1.498 0.002 1.619 sum 19.710 -7.464 -2.133 21.183 Atomic orbital electron populations 1.69540 1.07749 1.30291 1.45347 1.26015 0.96340 1.01992 0.94850 0.85640 0.79324 0.78007 0.80554 1.17700 1.17759 1.17630 1.19157 0.80253 0.96060 1.51215 0.90307 1.41706 1.06682 1.07542 1.61515 1.19609 0.88275 0.84681 0.88120 1.90568 1.69998 1.30841 1.56371 1.19666 0.87841 0.83622 0.77593 1.90649 1.70490 1.31511 1.51964 1.48310 1.08611 1.05732 1.68941 1.22613 0.97477 0.80585 1.01715 1.22860 0.92692 0.99867 1.00695 1.22972 0.99223 0.90291 1.03500 1.21885 0.78193 0.99057 0.97393 0.91174 1.22888 0.99000 0.99094 0.94365 1.23170 0.97610 1.00721 0.96479 1.22746 0.95857 1.01933 0.96474 1.22910 0.93209 1.02812 0.96528 0.89922 0.77352 0.91340 0.91632 0.90318 0.86927 0.87000 0.87906 0.92209 0.87369 0.94334 0.91206 0.89183 0.91508 0.87237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -51.54 13.94 21.76 0.30 -51.23 16 2 C 0.01 0.72 5.51 85.14 0.47 1.19 16 3 Si 0.94 40.69 27.74 68.60 1.90 42.59 16 4 H -0.25 -10.41 7.11 99.48 0.71 -9.70 16 5 H -0.25 -10.21 7.11 99.48 0.71 -9.50 16 6 H -0.25 -10.46 6.53 99.48 0.65 -9.81 16 7 C -0.34 -20.02 10.16 84.35 0.86 -19.16 16 8 H 0.08 5.32 7.37 -2.91 -0.02 5.30 16 9 N -0.54 -28.58 5.06 -308.87 -1.56 -30.14 16 10 C 0.41 20.97 7.78 87.08 0.68 21.65 16 11 O -0.59 -32.47 13.47 -3.73 -0.05 -32.52 16 12 C 0.53 23.20 7.63 87.08 0.66 23.86 16 13 O -0.57 -26.05 15.79 -3.54 -0.06 -26.11 16 14 N -0.58 -20.09 3.06 -790.27 -2.42 -22.51 16 15 C 0.10 2.95 5.86 86.86 0.51 3.46 16 16 C -0.12 -2.23 7.09 31.99 0.23 -2.00 16 17 C -0.12 -1.90 5.13 31.79 0.16 -1.73 16 18 C 0.14 3.45 2.96 45.35 0.13 3.59 16 19 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 20 C -0.13 -3.34 3.59 -10.27 -0.04 -3.38 16 21 C -0.14 -3.09 7.34 31.12 0.23 -2.86 16 22 C -0.13 -2.23 8.08 31.12 0.25 -1.98 16 23 C -0.12 -1.95 7.44 31.12 0.23 -1.71 16 24 H 0.29 15.12 8.30 -92.70 -0.77 14.35 16 25 H 0.39 19.34 5.22 -92.71 -0.48 18.85 16 26 H 0.07 2.49 6.50 -2.39 -0.02 2.48 16 27 H 0.07 1.99 8.14 -2.38 -0.02 1.98 16 28 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.11 1.11 8.14 -2.38 -0.02 1.09 16 31 H 0.10 1.31 4.95 -2.39 -0.01 1.30 16 32 H 0.06 1.97 7.18 -2.39 -0.02 1.96 16 33 H 0.11 1.89 5.38 -2.39 -0.01 1.88 16 34 H 0.04 1.02 8.14 -2.38 -0.02 1.00 16 35 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.07 1.12 8.14 -2.38 -0.02 1.11 16 38 H 0.11 1.26 7.15 -2.39 -0.02 1.24 16 Total: -1.00 -71.56 303.69 3.03 -68.53 By element: Atomic # 1 Polarization: 29.94 SS G_CDS: 0.54 Total: 30.48 kcal Atomic # 6 Polarization: 16.54 SS G_CDS: 4.38 Total: 20.92 kcal Atomic # 7 Polarization: -100.21 SS G_CDS: -3.68 Total: -103.89 kcal Atomic # 8 Polarization: -58.52 SS G_CDS: -0.11 Total: -58.62 kcal Atomic # 14 Polarization: 40.69 SS G_CDS: 1.90 Total: 42.59 kcal Total: -71.56 3.03 -68.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688956728.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.339 kcal (2) G-P(sol) polarization free energy of solvation -71.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds