Wall clock time and date at job start Mon Mar 30 2020 04:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31013 * 1 3 3 Si 1.86803 * 120.00048 * 2 1 4 4 H 1.48500 * 109.46572 * 239.99846 * 3 2 1 5 5 H 1.48491 * 109.47153 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46994 * 120.00064 * 3 2 1 7 7 C 1.39586 * 119.99863 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00058 * 179.97438 * 7 2 1 9 9 N 1.36120 * 120.00127 * 359.97438 * 7 2 1 10 10 C 1.34773 * 120.00177 * 180.02562 * 9 7 2 11 11 O 1.21504 * 119.99970 * 359.97438 * 10 9 7 12 12 C 1.48833 * 119.99973 * 180.02562 * 10 9 7 13 13 O 1.21438 * 120.00419 * 359.97438 * 12 10 9 14 14 N 1.34777 * 119.99794 * 179.97438 * 12 10 9 15 15 C 1.47429 * 125.64837 * 5.47443 * 14 12 10 16 16 C 1.54913 * 104.82819 * 155.82228 * 15 14 12 17 17 C 1.55163 * 101.58283 * 37.01349 * 16 15 14 18 18 C 1.47021 * 125.64576 * 185.41855 * 14 12 10 19 19 H 1.08997 * 110.01299 * 300.59433 * 18 14 12 20 20 C 1.53001 * 109.88323 * 61.69177 * 18 14 12 21 21 C 1.53779 * 113.61397 * 270.15047 * 20 18 14 22 22 C 1.53781 * 87.08056 * 220.02009 * 21 20 18 23 23 C 1.53777 * 87.08447 * 25.43068 * 22 21 20 24 24 H 0.97004 * 119.99614 * 0.02562 * 1 2 3 25 25 H 0.97000 * 119.99790 * 0.02562 * 9 7 2 26 26 H 1.08994 * 110.36405 * 36.99016 * 15 14 12 27 27 H 1.08991 * 110.36551 * 274.65725 * 15 14 12 28 28 H 1.08997 * 111.01094 * 278.93642 * 16 15 14 29 29 H 1.09002 * 110.99999 * 155.08222 * 16 15 14 30 30 H 1.08993 * 110.72040 * 82.85763 * 17 16 15 31 31 H 1.09002 * 110.71542 * 205.95687 * 17 16 15 32 32 H 1.08997 * 112.84787 * 41.45684 * 20 18 14 33 33 H 1.09001 * 113.61129 * 334.56575 * 21 20 18 34 34 H 1.08992 * 113.61602 * 105.46920 * 21 20 18 35 35 H 1.09010 * 113.60978 * 270.88438 * 22 21 20 36 36 H 1.08994 * 113.61656 * 139.98040 * 22 21 20 37 37 H 1.08999 * 113.61860 * 220.02345 * 23 22 21 38 38 H 1.09001 * 113.69295 * 89.12828 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2442 1.6178 0.0000 4 1 3.0979 1.6963 -1.2125 5 1 1.2792 2.7464 0.0006 6 1 3.0979 1.6964 1.2125 7 6 2.0080 -1.2089 0.0005 8 1 3.0880 -1.2089 0.0001 9 7 1.3274 -2.3877 0.0016 10 6 2.0013 -3.5549 0.0026 11 8 3.2163 -3.5549 0.0022 12 6 1.2570 -4.8438 0.0032 13 8 0.0427 -4.8438 0.0032 14 7 1.9309 -6.0110 0.0037 15 6 3.3933 -6.1588 0.1181 16 6 3.6046 -7.5853 0.6841 17 6 2.4784 -8.3752 -0.0338 18 6 1.3293 -7.3477 -0.1085 19 1 0.6308 -7.5125 0.7119 20 6 0.5999 -7.4794 -1.4470 21 6 -0.8748 -7.0470 -1.3900 22 6 -1.1802 -8.2473 -2.3015 23 6 0.0901 -8.9017 -1.7335 24 1 -0.4850 0.8401 -0.0004 25 1 0.3574 -2.3877 0.0016 26 1 3.7972 -5.4147 0.8045 27 1 3.8617 -6.0662 -0.8617 28 1 3.4652 -7.6015 1.7650 29 1 4.5870 -7.9717 0.4125 30 1 2.7940 -8.6742 -1.0333 31 1 2.1838 -9.2455 0.5527 32 1 1.1537 -7.0388 -2.2759 33 1 -1.3160 -7.1297 -0.3967 34 1 -1.0654 -6.0823 -1.8600 35 1 -1.1142 -8.0161 -3.3648 36 1 -2.0976 -8.7735 -2.0379 37 1 0.6786 -9.4341 -2.4808 38 1 -0.0858 -9.4920 -0.8342 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688956731.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:38 Heat of formation + Delta-G solvation = -51.733298 kcal Electronic energy + Delta-G solvation = -20806.550211 eV Core-core repulsion = 17649.488775 eV Total energy + Delta-G solvation = -3157.061436 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.23382 -38.56150 -37.10452 -36.52205 -34.19926 -31.55909 -31.01505 -29.45852 -26.03572 -25.37568 -24.71577 -23.50853 -21.49129 -20.58401 -19.32292 -18.77097 -18.06291 -16.47026 -16.25361 -15.82080 -15.19832 -14.85136 -14.32548 -14.24013 -13.94631 -13.30649 -13.19042 -12.78047 -12.55062 -12.53825 -12.26247 -12.19876 -11.76406 -11.65675 -11.35845 -11.16257 -11.01027 -10.71004 -10.53834 -10.40061 -10.37196 -10.19208 -10.06232 -9.88561 -9.67558 -8.23776 -8.14084 -8.10530 -6.64070 -3.96649 2.51533 3.15734 3.18471 3.18926 3.33162 4.06276 4.30580 4.50874 4.67471 4.79573 4.82586 4.94369 5.07426 5.11574 5.19369 5.22684 5.45227 5.51573 5.65401 5.79074 5.81087 5.86165 5.92499 5.93123 5.98316 6.06495 6.19200 6.31419 6.37546 6.41345 6.48782 6.66347 6.81567 7.33364 7.77379 7.93003 8.34733 8.65978 8.99544 9.35843 9.88737 10.50907 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.027245 B = 0.005110 C = 0.004444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.480415 B = 5477.980372 C = 6298.996323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.031 3.969 3 Si 0.939 3.061 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.306 4.306 8 H 0.111 0.889 9 N -0.501 5.501 10 C 0.398 3.602 11 O -0.593 6.593 12 C 0.527 3.473 13 O -0.539 6.539 14 N -0.599 5.599 15 C 0.111 3.889 16 C -0.139 4.139 17 C -0.125 4.125 18 C 0.147 3.853 19 H 0.072 0.928 20 C -0.117 4.117 21 C -0.116 4.116 22 C -0.149 4.149 23 C -0.130 4.130 24 H 0.280 0.720 25 H 0.404 0.596 26 H 0.098 0.902 27 H 0.065 0.935 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.693 -15.269 -1.358 15.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.176 4.176 3 Si 0.764 3.236 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.194 1.194 7 C -0.437 4.437 8 H 0.129 0.871 9 N -0.135 5.135 10 C 0.182 3.818 11 O -0.481 6.481 12 C 0.314 3.686 13 O -0.415 6.415 14 N -0.334 5.334 15 C -0.012 4.012 16 C -0.178 4.178 17 C -0.163 4.163 18 C 0.043 3.957 19 H 0.090 0.910 20 C -0.137 4.137 21 C -0.153 4.153 22 C -0.186 4.186 23 C -0.168 4.168 24 H 0.091 0.909 25 H 0.240 0.760 26 H 0.116 0.884 27 H 0.083 0.917 28 H 0.091 0.909 29 H 0.098 0.902 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.106 0.894 33 H 0.099 0.901 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.612 -15.014 -1.354 15.161 hybrid contribution -0.183 0.815 -0.058 0.838 sum 1.429 -14.198 -1.412 14.340 Atomic orbital electron populations 1.69480 1.06491 1.29352 1.45566 1.25561 0.95607 1.00382 0.96000 0.85796 0.78872 0.79455 0.79458 1.19432 1.20624 1.19423 1.19803 0.93876 0.81907 1.48081 0.87120 1.41532 1.10430 1.04127 1.57453 1.18950 0.87852 0.84196 0.90777 1.90540 1.12920 1.86385 1.58245 1.20396 0.87124 0.84596 0.76509 1.90680 1.13732 1.87397 1.49701 1.48234 1.08142 1.04479 1.72522 1.22406 0.80511 0.96365 1.01903 1.22896 0.98780 0.95654 1.00420 1.22645 0.95035 0.97227 1.01366 1.21605 0.94863 0.82306 0.96888 0.90952 1.22905 0.96595 0.96794 0.97369 1.22804 0.94871 0.97794 0.99847 1.22885 0.97603 0.98502 0.99610 1.22869 0.97358 0.95812 1.00720 0.90940 0.76048 0.88404 0.91715 0.90933 0.90163 0.90584 0.90520 0.89413 0.90126 0.91207 0.90644 0.91855 0.91838 0.90247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.53 13.03 55.53 0.72 -22.80 16 2 C 0.03 0.82 5.51 -17.40 -0.10 0.72 16 3 Si 0.94 20.22 29.56 -169.99 -5.02 15.19 16 4 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 5 H -0.28 -5.89 7.11 56.52 0.40 -5.48 16 6 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 7 C -0.31 -8.47 9.67 -15.15 -0.15 -8.62 16 8 H 0.11 3.11 7.15 -52.49 -0.38 2.74 16 9 N -0.50 -13.52 5.25 -11.59 -0.06 -13.58 16 10 C 0.40 10.12 7.78 -11.88 -0.09 10.03 16 11 O -0.59 -15.67 13.47 5.36 0.07 -15.60 16 12 C 0.53 11.74 7.64 -11.87 -0.09 11.65 16 13 O -0.54 -12.53 14.35 5.42 0.08 -12.45 16 14 N -0.60 -10.86 3.06 -163.75 -0.50 -11.36 16 15 C 0.11 1.78 5.87 -2.52 -0.01 1.77 16 16 C -0.14 -1.60 7.09 -24.58 -0.17 -1.78 16 17 C -0.12 -1.35 5.86 -24.89 -0.15 -1.49 16 18 C 0.15 2.12 2.78 -66.95 -0.19 1.93 16 19 H 0.07 1.09 7.84 -51.93 -0.41 0.68 16 20 C -0.12 -1.63 3.07 -89.81 -0.28 -1.90 16 21 C -0.12 -1.73 5.73 -25.92 -0.15 -1.88 16 22 C -0.15 -1.73 8.08 -25.92 -0.21 -1.94 16 23 C -0.13 -1.39 6.91 -25.92 -0.18 -1.57 16 24 H 0.28 7.04 8.30 -40.82 -0.34 6.70 16 25 H 0.40 11.02 7.35 -40.82 -0.30 10.72 16 26 H 0.10 1.80 6.50 -51.93 -0.34 1.46 16 27 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.08 0.76 7.77 -51.93 -0.40 0.36 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.08 1.26 7.89 -51.93 -0.41 0.85 16 34 H 0.07 1.22 7.75 -51.93 -0.40 0.81 16 35 H 0.07 0.85 8.14 -51.92 -0.42 0.43 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.08 0.77 8.10 -51.93 -0.42 0.35 16 LS Contribution 309.83 15.07 4.67 4.67 Total: -1.00 -29.75 309.83 -7.38 -37.13 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: -5.57 Total: 11.88 kcal Atomic # 6 Polarization: 8.68 SS G_CDS: -1.76 Total: 6.92 kcal Atomic # 7 Polarization: -47.90 SS G_CDS: 0.16 Total: -47.74 kcal Atomic # 8 Polarization: -28.20 SS G_CDS: 0.15 Total: -28.05 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.75 -7.38 -37.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688956731.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.607 kcal (2) G-P(sol) polarization free energy of solvation -29.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds