Wall clock time and date at job start Mon Mar 30 2020 04:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31013 * 1 3 3 Si 1.86803 * 120.00048 * 2 1 4 4 H 1.48500 * 109.46572 * 239.99846 * 3 2 1 5 5 H 1.48491 * 109.47153 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46994 * 120.00064 * 3 2 1 7 7 C 1.39586 * 119.99863 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00058 * 179.97438 * 7 2 1 9 9 N 1.36120 * 120.00127 * 359.97438 * 7 2 1 10 10 C 1.34773 * 120.00177 * 180.02562 * 9 7 2 11 11 O 1.21504 * 119.99970 * 359.97438 * 10 9 7 12 12 C 1.48833 * 119.99973 * 180.02562 * 10 9 7 13 13 O 1.21438 * 120.00419 * 359.97438 * 12 10 9 14 14 N 1.34777 * 119.99794 * 179.97438 * 12 10 9 15 15 C 1.47429 * 125.64837 * 5.47443 * 14 12 10 16 16 C 1.54913 * 104.82819 * 155.82228 * 15 14 12 17 17 C 1.55163 * 101.58283 * 37.01349 * 16 15 14 18 18 C 1.47021 * 125.64576 * 185.41855 * 14 12 10 19 19 H 1.08997 * 110.01299 * 300.59433 * 18 14 12 20 20 C 1.53001 * 109.88323 * 61.69177 * 18 14 12 21 21 C 1.53779 * 113.61397 * 270.15047 * 20 18 14 22 22 C 1.53781 * 87.08056 * 220.02009 * 21 20 18 23 23 C 1.53777 * 87.08447 * 25.43068 * 22 21 20 24 24 H 0.97004 * 119.99614 * 0.02562 * 1 2 3 25 25 H 0.97000 * 119.99790 * 0.02562 * 9 7 2 26 26 H 1.08994 * 110.36405 * 36.99016 * 15 14 12 27 27 H 1.08991 * 110.36551 * 274.65725 * 15 14 12 28 28 H 1.08997 * 111.01094 * 278.93642 * 16 15 14 29 29 H 1.09002 * 110.99999 * 155.08222 * 16 15 14 30 30 H 1.08993 * 110.72040 * 82.85763 * 17 16 15 31 31 H 1.09002 * 110.71542 * 205.95687 * 17 16 15 32 32 H 1.08997 * 112.84787 * 41.45684 * 20 18 14 33 33 H 1.09001 * 113.61129 * 334.56575 * 21 20 18 34 34 H 1.08992 * 113.61602 * 105.46920 * 21 20 18 35 35 H 1.09010 * 113.60978 * 270.88438 * 22 21 20 36 36 H 1.08994 * 113.61656 * 139.98040 * 22 21 20 37 37 H 1.08999 * 113.61860 * 220.02345 * 23 22 21 38 38 H 1.09001 * 113.69295 * 89.12828 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2442 1.6178 0.0000 4 1 3.0979 1.6963 -1.2125 5 1 1.2792 2.7464 0.0006 6 1 3.0979 1.6964 1.2125 7 6 2.0080 -1.2089 0.0005 8 1 3.0880 -1.2089 0.0001 9 7 1.3274 -2.3877 0.0016 10 6 2.0013 -3.5549 0.0026 11 8 3.2163 -3.5549 0.0022 12 6 1.2570 -4.8438 0.0032 13 8 0.0427 -4.8438 0.0032 14 7 1.9309 -6.0110 0.0037 15 6 3.3933 -6.1588 0.1181 16 6 3.6046 -7.5853 0.6841 17 6 2.4784 -8.3752 -0.0338 18 6 1.3293 -7.3477 -0.1085 19 1 0.6308 -7.5125 0.7119 20 6 0.5999 -7.4794 -1.4470 21 6 -0.8748 -7.0470 -1.3900 22 6 -1.1802 -8.2473 -2.3015 23 6 0.0901 -8.9017 -1.7335 24 1 -0.4850 0.8401 -0.0004 25 1 0.3574 -2.3877 0.0016 26 1 3.7972 -5.4147 0.8045 27 1 3.8617 -6.0662 -0.8617 28 1 3.4652 -7.6015 1.7650 29 1 4.5870 -7.9717 0.4125 30 1 2.7940 -8.6742 -1.0333 31 1 2.1838 -9.2455 0.5527 32 1 1.1537 -7.0388 -2.2759 33 1 -1.3160 -7.1297 -0.3967 34 1 -1.0654 -6.0823 -1.8600 35 1 -1.1142 -8.0161 -3.3648 36 1 -2.0976 -8.7735 -2.0379 37 1 0.6786 -9.4341 -2.4808 38 1 -0.0858 -9.4920 -0.8342 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688956731.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:37 Heat of formation + Delta-G solvation = -71.213075 kcal Electronic energy + Delta-G solvation = -20807.394918 eV Core-core repulsion = 17649.488775 eV Total energy + Delta-G solvation = -3157.906143 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.70698 -40.14723 -38.72772 -37.98546 -36.23032 -33.52773 -32.46301 -30.60644 -27.94414 -26.52178 -25.92101 -25.07556 -22.87401 -21.81409 -20.66502 -20.34202 -19.91667 -18.21941 -17.82954 -17.30320 -16.79132 -16.27131 -15.98430 -15.82690 -15.47683 -14.87688 -14.53519 -14.36275 -13.99028 -13.72151 -13.68139 -13.35901 -13.26081 -12.98555 -12.86186 -12.58815 -12.42390 -12.25736 -12.12552 -11.82610 -11.68076 -11.60001 -11.37313 -11.20984 -10.93858 -10.27748 -10.06607 -9.64170 -8.65775 -6.11004 0.64080 1.38854 1.47818 1.51932 1.74509 2.26985 2.38241 3.09846 3.15125 3.55982 3.68255 3.77263 3.84235 3.92331 4.02669 4.11487 4.20506 4.35155 4.41707 4.68521 4.82184 4.88635 4.90857 4.97419 4.99200 5.06953 5.10465 5.13931 5.21464 5.23963 5.31559 5.40670 5.48103 5.61634 5.69261 6.24483 6.37463 6.78206 7.00289 7.29637 7.80790 8.50133 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.027245 B = 0.005110 C = 0.004444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.480415 B = 5477.980372 C = 6298.996323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C -0.006 4.006 3 Si 1.010 2.990 4 H -0.264 1.264 5 H -0.267 1.267 6 H -0.263 1.263 7 C -0.345 4.345 8 H 0.098 0.902 9 N -0.515 5.515 10 C 0.392 3.608 11 O -0.607 6.607 12 C 0.524 3.476 13 O -0.557 6.557 14 N -0.592 5.592 15 C 0.100 3.900 16 C -0.124 4.124 17 C -0.111 4.111 18 C 0.136 3.864 19 H 0.068 0.932 20 C -0.122 4.122 21 C -0.130 4.130 22 C -0.140 4.140 23 C -0.106 4.106 24 H 0.288 0.712 25 H 0.399 0.601 26 H 0.068 0.932 27 H 0.062 0.938 28 H 0.077 0.923 29 H 0.111 0.889 30 H 0.092 0.908 31 H 0.110 0.890 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.030 0.970 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.603 -17.596 -1.470 17.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.209 4.209 3 Si 0.831 3.169 4 H -0.189 1.189 5 H -0.191 1.191 6 H -0.188 1.188 7 C -0.475 4.475 8 H 0.116 0.884 9 N -0.149 5.149 10 C 0.177 3.823 11 O -0.496 6.496 12 C 0.309 3.691 13 O -0.436 6.436 14 N -0.325 5.325 15 C -0.022 4.022 16 C -0.162 4.162 17 C -0.149 4.149 18 C 0.034 3.966 19 H 0.086 0.914 20 C -0.142 4.142 21 C -0.168 4.168 22 C -0.177 4.177 23 C -0.144 4.144 24 H 0.098 0.902 25 H 0.233 0.767 26 H 0.087 0.913 27 H 0.081 0.919 28 H 0.096 0.904 29 H 0.130 0.870 30 H 0.111 0.889 31 H 0.129 0.871 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.049 0.951 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.105 0.895 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.539 -17.390 -1.467 17.636 hybrid contribution -0.466 1.480 -0.022 1.551 sum 2.073 -15.911 -1.488 16.114 Atomic orbital electron populations 1.69557 1.07874 1.30766 1.45514 1.26542 0.96489 1.03464 0.94454 0.84751 0.77730 0.74781 0.79631 1.18871 1.19098 1.18806 1.19917 0.93599 0.83074 1.50915 0.88408 1.41634 1.10092 1.04745 1.58414 1.19655 0.88010 0.85225 0.89434 1.90510 1.13633 1.87078 1.58389 1.19807 0.86793 0.84934 0.77552 1.90669 1.14119 1.87716 1.51072 1.48362 1.09389 1.04756 1.69977 1.22564 0.78969 0.99164 1.01484 1.22869 1.00813 0.91937 1.00600 1.22695 0.92595 0.96673 1.02905 1.22007 0.96488 0.80981 0.97077 0.91359 1.22910 0.95303 0.99504 0.96447 1.22819 0.96606 0.97460 0.99890 1.22859 0.99187 0.96620 0.99039 1.22802 0.95967 0.93687 1.01925 0.90190 0.76697 0.91350 0.91944 0.90394 0.87026 0.88934 0.87113 0.91078 0.91218 0.95122 0.90368 0.90320 0.89518 0.88316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -49.68 13.03 21.76 0.28 -49.39 16 2 C -0.01 -0.30 5.51 85.14 0.47 0.17 16 3 Si 1.01 41.66 29.56 68.60 2.03 43.68 16 4 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 5 H -0.27 -10.30 7.11 99.48 0.71 -9.59 16 6 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 7 C -0.35 -19.94 9.67 84.35 0.82 -19.12 16 8 H 0.10 5.76 7.15 -2.91 -0.02 5.74 16 9 N -0.51 -29.32 5.25 -308.88 -1.62 -30.94 16 10 C 0.39 20.98 7.78 87.08 0.68 21.65 16 11 O -0.61 -33.58 13.47 -3.73 -0.05 -33.63 16 12 C 0.52 24.40 7.64 87.08 0.67 25.07 16 13 O -0.56 -27.31 14.35 -3.52 -0.05 -27.36 16 14 N -0.59 -21.64 3.06 -790.30 -2.42 -24.06 16 15 C 0.10 3.18 5.87 86.86 0.51 3.69 16 16 C -0.12 -2.44 7.09 31.99 0.23 -2.22 16 17 C -0.11 -1.92 5.86 31.79 0.19 -1.74 16 18 C 0.14 3.71 2.78 45.34 0.13 3.84 16 19 H 0.07 1.95 7.84 -2.39 -0.02 1.93 16 20 C -0.12 -3.25 3.07 -10.27 -0.03 -3.28 16 21 C -0.13 -3.95 5.73 31.12 0.18 -3.77 16 22 C -0.14 -2.99 8.08 31.12 0.25 -2.73 16 23 C -0.11 -1.88 6.91 31.12 0.22 -1.67 16 24 H 0.29 14.60 8.30 -92.71 -0.77 13.83 16 25 H 0.40 23.09 7.35 -92.71 -0.68 22.41 16 26 H 0.07 2.58 6.50 -2.39 -0.02 2.56 16 27 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.09 1.37 7.77 -2.39 -0.02 1.36 16 31 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.07 2.22 7.89 -2.39 -0.02 2.21 16 34 H 0.03 1.13 7.75 -2.39 -0.02 1.11 16 35 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 36 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.10 1.43 8.10 -2.39 -0.02 1.41 16 Total: -1.00 -68.80 309.83 2.84 -65.95 By element: Atomic # 1 Polarization: 35.47 SS G_CDS: 0.38 Total: 35.85 kcal Atomic # 6 Polarization: 15.60 SS G_CDS: 4.29 Total: 19.89 kcal Atomic # 7 Polarization: -100.63 SS G_CDS: -3.76 Total: -104.39 kcal Atomic # 8 Polarization: -60.89 SS G_CDS: -0.10 Total: -60.99 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.68 kcal Total: -68.80 2.84 -65.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688956731.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.260 kcal (2) G-P(sol) polarization free energy of solvation -68.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds