Wall clock time and date at job start Mon Mar 30 2020 04:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86805 * 120.00070 * 2 1 4 4 H 1.48492 * 109.47077 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46891 * 300.00380 * 3 2 1 6 6 H 1.48501 * 109.47096 * 60.00146 * 3 2 1 7 7 C 1.38807 * 120.00007 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99997 * 194.85358 * 7 2 1 9 9 N 1.36935 * 120.00141 * 14.85760 * 7 2 1 10 10 C 1.46966 * 120.59344 * 34.14789 * 9 7 2 11 11 C 1.53369 * 108.63300 * 124.75459 * 10 9 7 12 12 N 1.46968 * 108.77617 * 49.34136 * 11 10 9 13 13 C 1.34775 * 120.59579 * 124.83598 * 12 11 10 14 14 O 1.21285 * 119.99806 * 183.97587 * 13 12 11 15 15 C 1.50697 * 120.00087 * 3.97663 * 13 12 11 16 16 C 1.53001 * 119.80822 * 292.25992 * 15 13 12 17 17 C 1.53008 * 60.65425 * 247.68734 * 16 15 13 18 18 H 1.08994 * 119.80567 * 112.30141 * 17 16 15 19 19 C 1.54475 * 118.06347 * 269.59427 * 17 16 15 20 20 O 1.44423 * 104.80751 * 86.82751 * 19 17 16 21 21 C 1.46773 * 105.41554 * 319.28753 * 20 19 17 22 22 C 1.46999 * 118.78832 * 305.07243 * 12 11 10 23 23 C 1.46965 * 120.59466 * 214.13162 * 9 7 2 24 24 H 0.97003 * 120.00095 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.60891 * 5.00895 * 10 9 7 26 26 H 1.09004 * 109.60856 * 244.49481 * 10 9 7 27 27 H 1.09000 * 109.61199 * 169.16370 * 11 10 9 28 28 H 1.08996 * 109.61281 * 289.50650 * 11 10 9 29 29 H 1.08996 * 117.42919 * 355.36180 * 16 15 13 30 30 H 1.09001 * 117.43222 * 140.06706 * 16 15 13 31 31 H 1.09006 * 110.36829 * 205.65933 * 19 17 16 32 32 H 1.09001 * 110.37428 * 327.99199 * 19 17 16 33 33 H 1.08995 * 110.29145 * 282.46241 * 21 20 19 34 34 H 1.09007 * 111.53060 * 159.38771 * 21 20 19 35 35 H 1.09006 * 109.46694 * 295.17923 * 22 12 11 36 36 H 1.09000 * 109.75798 * 174.84031 * 22 12 11 37 37 H 1.09002 * 109.61007 * 354.98512 * 23 9 7 38 38 H 1.08992 * 109.61363 * 115.49909 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0632 -1.2178 0.2392 9 7 1.3599 -2.3680 -0.3051 10 6 0.2708 -2.3813 -1.2919 11 6 0.6038 -3.4144 -2.3754 12 7 0.9851 -4.6759 -1.7249 13 6 0.3469 -5.8239 -2.0272 14 8 0.6209 -6.8447 -1.4323 15 6 -0.7070 -5.8390 -3.1041 16 6 -2.0275 -5.0973 -2.8866 17 6 -2.0287 -6.6258 -2.9571 18 1 -2.2645 -7.2090 -2.0670 19 6 -2.2261 -7.2894 -4.3380 20 8 -0.8989 -7.3701 -4.9018 21 6 -0.2505 -6.0993 -4.5568 22 6 2.0717 -4.6617 -0.7350 23 6 1.7387 -3.6286 0.3485 24 1 -0.4850 0.8401 0.0004 25 1 0.1752 -1.3943 -1.7444 26 1 -0.6638 -2.6538 -0.8015 27 1 -0.2701 -3.5777 -3.0061 28 1 1.4318 -3.0519 -2.9844 29 1 -2.1914 -4.6396 -1.9111 30 1 -2.4451 -4.5559 -3.7355 31 1 -2.6505 -8.2868 -4.2224 32 1 -2.8687 -6.6732 -4.9668 33 1 -0.6034 -5.3044 -5.2137 34 1 0.8356 -6.1784 -4.6049 35 1 3.0064 -4.3894 -1.2253 36 1 2.1703 -5.6482 -0.2819 37 1 2.6127 -3.4654 0.9792 38 1 0.9087 -3.9898 0.9556 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000689106476.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:25 Heat of formation + Delta-G solvation = -10.919977 kcal Electronic energy + Delta-G solvation = -21132.315845 eV Core-core repulsion = 17977.024207 eV Total energy + Delta-G solvation = -3155.291638 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.79580 -38.77630 -36.73042 -34.67785 -33.81979 -31.38921 -30.28329 -28.98210 -27.01440 -25.52336 -24.18907 -23.06179 -22.28101 -21.22304 -20.02259 -18.49975 -17.28416 -16.36161 -15.93273 -15.67964 -15.41499 -14.80287 -14.61374 -14.59836 -13.80661 -13.72776 -13.48257 -13.33660 -13.06653 -12.80421 -12.43136 -11.96093 -11.69574 -11.38529 -11.30739 -10.90589 -10.85409 -10.71278 -10.54374 -10.32237 -10.27342 -10.09851 -9.89235 -9.77256 -9.29294 -8.64012 -8.29560 -6.68958 -5.91488 -3.41753 2.81541 3.13562 3.29253 3.37876 3.39381 3.41812 3.83213 4.29970 4.39234 4.46941 4.64270 4.85158 4.89128 5.18835 5.24305 5.29185 5.46019 5.51505 5.55633 5.60761 5.76626 5.79285 5.83220 5.91965 5.98075 6.09248 6.17029 6.31280 6.40258 6.47311 6.75317 6.87562 7.14368 7.33727 7.69844 7.85511 8.34612 8.50027 9.07514 9.68102 10.28902 11.16273 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.033697 B = 0.005107 C = 0.004785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.735925 B = 5481.329588 C = 5850.088827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.010 3.990 3 Si 0.903 3.097 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.289 1.289 7 C -0.260 4.260 8 H 0.065 0.935 9 N -0.590 5.590 10 C 0.163 3.837 11 C 0.079 3.921 12 N -0.589 5.589 13 C 0.553 3.447 14 O -0.550 6.550 15 C -0.196 4.196 16 C -0.120 4.120 17 C -0.163 4.163 18 H 0.126 0.874 19 C 0.076 3.924 20 O -0.374 6.374 21 C 0.095 3.905 22 C 0.094 3.906 23 C 0.132 3.868 24 H 0.255 0.745 25 H 0.091 0.909 26 H 0.024 0.976 27 H 0.075 0.925 28 H 0.062 0.938 29 H 0.112 0.888 30 H 0.106 0.894 31 H 0.098 0.902 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.099 0.901 35 H 0.063 0.937 36 H 0.081 0.919 37 H 0.067 0.933 38 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.929 -8.621 -8.605 12.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.190 4.190 3 Si 0.733 3.267 4 H -0.201 1.201 5 H -0.214 1.214 6 H -0.216 1.216 7 C -0.390 4.390 8 H 0.083 0.917 9 N -0.313 5.313 10 C 0.036 3.964 11 C -0.045 4.045 12 N -0.320 5.320 13 C 0.340 3.660 14 O -0.429 6.429 15 C -0.199 4.199 16 C -0.157 4.157 17 C -0.182 4.182 18 H 0.144 0.856 19 C -0.001 4.001 20 O -0.293 6.293 21 C 0.019 3.981 22 C -0.029 4.029 23 C 0.005 3.995 24 H 0.065 0.935 25 H 0.109 0.891 26 H 0.042 0.958 27 H 0.094 0.906 28 H 0.081 0.919 29 H 0.130 0.870 30 H 0.124 0.876 31 H 0.116 0.884 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.117 0.883 35 H 0.082 0.918 36 H 0.100 0.900 37 H 0.086 0.914 38 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -3.762 -9.173 -8.392 12.989 hybrid contribution 0.296 1.204 0.262 1.267 sum -3.466 -7.969 -8.130 11.901 Atomic orbital electron populations 1.70013 1.05403 1.25710 1.53185 1.25220 0.95300 0.98667 0.99786 0.86220 0.79498 0.83655 0.77364 1.20092 1.21420 1.21564 1.19191 0.91840 0.84203 1.43774 0.91703 1.43921 1.40214 1.03452 1.43684 1.21073 0.90112 0.96883 0.88321 1.22717 0.99884 0.84570 0.97309 1.48000 1.35193 1.07717 1.41117 1.19067 0.81303 0.83202 0.82440 1.90651 1.66061 1.33153 1.53014 1.23127 0.89985 1.09835 0.96986 1.23310 0.94862 0.92846 1.04708 1.24372 0.98637 0.94559 1.00608 0.85595 1.22885 0.85375 1.01357 0.90459 1.89534 1.26187 1.36823 1.76783 1.23107 0.99052 0.86281 0.89681 1.22253 0.88626 1.01012 0.91045 1.21309 0.98607 0.87003 0.92571 0.93496 0.89054 0.95817 0.90637 0.91916 0.86958 0.87621 0.88395 0.91706 0.90650 0.88296 0.91841 0.90035 0.91418 0.95915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.91 11.49 55.49 0.64 -24.28 16 2 C 0.01 0.26 4.92 -17.43 -0.09 0.18 16 3 Si 0.90 20.73 29.58 -169.99 -5.03 15.70 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 7 C -0.26 -6.83 9.52 -15.06 -0.14 -6.97 16 8 H 0.07 1.68 7.87 -52.48 -0.41 1.27 16 9 N -0.59 -14.13 2.93 -172.04 -0.50 -14.64 16 10 C 0.16 3.57 5.47 -3.60 -0.02 3.55 16 11 C 0.08 1.38 6.41 -3.60 -0.02 1.36 16 12 N -0.59 -10.65 2.96 -172.46 -0.51 -11.16 16 13 C 0.55 9.94 7.17 -10.99 -0.08 9.86 16 14 O -0.55 -11.64 16.50 5.55 0.09 -11.55 16 15 C -0.20 -2.76 1.44 -154.09 -0.22 -2.98 16 16 C -0.12 -1.42 8.21 -26.73 -0.22 -1.64 16 17 C -0.16 -2.00 7.11 -89.05 -0.63 -2.63 16 18 H 0.13 1.60 8.14 -51.93 -0.42 1.17 16 19 C 0.08 0.81 7.45 37.93 0.28 1.09 16 20 O -0.37 -5.10 11.72 -35.23 -0.41 -5.52 16 21 C 0.10 1.20 7.41 37.93 0.28 1.48 16 22 C 0.09 1.75 6.59 -3.58 -0.02 1.72 16 23 C 0.13 2.76 6.68 -3.60 -0.02 2.74 16 24 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 25 H 0.09 2.20 6.38 -51.93 -0.33 1.87 16 26 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.08 1.11 5.08 -51.93 -0.26 0.84 16 28 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.11 1.46 8.14 -51.93 -0.42 1.03 16 30 H 0.11 1.00 8.14 -51.93 -0.42 0.57 16 31 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.10 1.26 8.02 -51.93 -0.42 0.84 16 35 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.08 1.49 7.00 -51.93 -0.36 1.13 16 37 H 0.07 1.35 7.93 -51.93 -0.41 0.94 16 38 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 306.89 15.07 4.62 4.62 Total: -1.00 -31.16 306.89 -7.57 -38.73 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -5.56 Total: 0.33 kcal Atomic # 6 Polarization: 8.66 SS G_CDS: -0.91 Total: 7.75 kcal Atomic # 7 Polarization: -49.69 SS G_CDS: -0.38 Total: -50.07 kcal Atomic # 8 Polarization: -16.75 SS G_CDS: -0.32 Total: -17.07 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.03 Total: 15.70 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.16 -7.57 -38.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689106476.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.813 kcal (2) G-P(sol) polarization free energy of solvation -31.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds