Wall clock time and date at job start Mon Mar 30 2020 04:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86805 * 120.00070 * 2 1 4 4 H 1.48492 * 109.47077 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46891 * 300.00380 * 3 2 1 6 6 H 1.48501 * 109.47096 * 60.00146 * 3 2 1 7 7 C 1.38807 * 120.00007 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99997 * 194.85358 * 7 2 1 9 9 N 1.36935 * 120.00141 * 14.85760 * 7 2 1 10 10 C 1.46966 * 120.59344 * 34.14789 * 9 7 2 11 11 C 1.53369 * 108.63300 * 124.75459 * 10 9 7 12 12 N 1.46968 * 108.77617 * 49.34136 * 11 10 9 13 13 C 1.34775 * 120.59579 * 124.83598 * 12 11 10 14 14 O 1.21285 * 119.99806 * 183.97587 * 13 12 11 15 15 C 1.50697 * 120.00087 * 3.97663 * 13 12 11 16 16 C 1.53001 * 119.80822 * 292.25992 * 15 13 12 17 17 C 1.53008 * 60.65425 * 247.68734 * 16 15 13 18 18 H 1.08994 * 119.80567 * 112.30141 * 17 16 15 19 19 C 1.54475 * 118.06347 * 269.59427 * 17 16 15 20 20 O 1.44423 * 104.80751 * 86.82751 * 19 17 16 21 21 C 1.46773 * 105.41554 * 319.28753 * 20 19 17 22 22 C 1.46999 * 118.78832 * 305.07243 * 12 11 10 23 23 C 1.46965 * 120.59466 * 214.13162 * 9 7 2 24 24 H 0.97003 * 120.00095 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.60891 * 5.00895 * 10 9 7 26 26 H 1.09004 * 109.60856 * 244.49481 * 10 9 7 27 27 H 1.09000 * 109.61199 * 169.16370 * 11 10 9 28 28 H 1.08996 * 109.61281 * 289.50650 * 11 10 9 29 29 H 1.08996 * 117.42919 * 355.36180 * 16 15 13 30 30 H 1.09001 * 117.43222 * 140.06706 * 16 15 13 31 31 H 1.09006 * 110.36829 * 205.65933 * 19 17 16 32 32 H 1.09001 * 110.37428 * 327.99199 * 19 17 16 33 33 H 1.08995 * 110.29145 * 282.46241 * 21 20 19 34 34 H 1.09007 * 111.53060 * 159.38771 * 21 20 19 35 35 H 1.09006 * 109.46694 * 295.17923 * 22 12 11 36 36 H 1.09000 * 109.75798 * 174.84031 * 22 12 11 37 37 H 1.09002 * 109.61007 * 354.98512 * 23 9 7 38 38 H 1.08992 * 109.61363 * 115.49909 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0632 -1.2178 0.2392 9 7 1.3599 -2.3680 -0.3051 10 6 0.2708 -2.3813 -1.2919 11 6 0.6038 -3.4144 -2.3754 12 7 0.9851 -4.6759 -1.7249 13 6 0.3469 -5.8239 -2.0272 14 8 0.6209 -6.8447 -1.4323 15 6 -0.7070 -5.8390 -3.1041 16 6 -2.0275 -5.0973 -2.8866 17 6 -2.0287 -6.6258 -2.9571 18 1 -2.2645 -7.2090 -2.0670 19 6 -2.2261 -7.2894 -4.3380 20 8 -0.8989 -7.3701 -4.9018 21 6 -0.2505 -6.0993 -4.5568 22 6 2.0717 -4.6617 -0.7350 23 6 1.7387 -3.6286 0.3485 24 1 -0.4850 0.8401 0.0004 25 1 0.1752 -1.3943 -1.7444 26 1 -0.6638 -2.6538 -0.8015 27 1 -0.2701 -3.5777 -3.0061 28 1 1.4318 -3.0519 -2.9844 29 1 -2.1914 -4.6396 -1.9111 30 1 -2.4451 -4.5559 -3.7355 31 1 -2.6505 -8.2868 -4.2224 32 1 -2.8687 -6.6732 -4.9668 33 1 -0.6034 -5.3044 -5.2137 34 1 0.8356 -6.1784 -4.6049 35 1 3.0064 -4.3894 -1.2253 36 1 2.1703 -5.6482 -0.2819 37 1 2.6127 -3.4654 0.9792 38 1 0.9087 -3.9898 0.9556 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000689106476.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:24 Heat of formation + Delta-G solvation = -31.369157 kcal Electronic energy + Delta-G solvation = -21133.202588 eV Core-core repulsion = 17977.024207 eV Total energy + Delta-G solvation = -3156.178381 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.94061 -40.08809 -38.37118 -35.79580 -35.46321 -33.20451 -31.94795 -29.98743 -28.69417 -26.43186 -25.86968 -24.66441 -23.74351 -22.23551 -21.51419 -19.95606 -18.72643 -17.82900 -17.47655 -16.76019 -16.67391 -16.44597 -15.97365 -15.66889 -15.48345 -15.27411 -15.10774 -14.87062 -14.27092 -13.99025 -13.68922 -13.36456 -13.18819 -13.00722 -12.71534 -12.52303 -12.26913 -12.20163 -12.04890 -11.99737 -11.78260 -11.64564 -11.28392 -10.78944 -10.64112 -10.54479 -9.87993 -8.61228 -7.90672 -5.45132 1.43157 1.48086 1.50853 1.60624 1.88402 2.29600 2.50135 2.92558 3.25146 3.34824 3.41495 3.47729 3.60245 3.88927 4.01388 4.20415 4.22550 4.34670 4.36208 4.49020 4.57680 4.63489 4.67204 4.71230 4.75120 4.78117 4.79840 4.88033 5.03740 5.06772 5.18271 5.49743 5.56355 5.61887 5.64644 6.37494 6.41480 7.06798 7.11077 7.75235 8.32768 9.14591 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.033697 B = 0.005107 C = 0.004785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.735925 B = 5481.329588 C = 5850.088827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.036 4.036 3 Si 0.967 3.033 4 H -0.268 1.268 5 H -0.285 1.285 6 H -0.294 1.294 7 C -0.272 4.272 8 H 0.065 0.935 9 N -0.607 5.607 10 C 0.170 3.830 11 C 0.097 3.903 12 N -0.593 5.593 13 C 0.550 3.450 14 O -0.589 6.589 15 C -0.218 4.218 16 C -0.104 4.104 17 C -0.159 4.159 18 H 0.114 0.886 19 C 0.077 3.923 20 O -0.397 6.397 21 C 0.099 3.901 22 C 0.103 3.897 23 C 0.134 3.866 24 H 0.253 0.747 25 H 0.069 0.931 26 H 0.001 0.999 27 H 0.108 0.892 28 H 0.071 0.929 29 H 0.096 0.904 30 H 0.140 0.860 31 H 0.110 0.890 32 H 0.095 0.905 33 H 0.108 0.892 34 H 0.090 0.910 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.005 0.995 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.236 -8.497 -10.473 14.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.233 4.233 3 Si 0.795 3.205 4 H -0.192 1.192 5 H -0.211 1.211 6 H -0.221 1.221 7 C -0.402 4.402 8 H 0.082 0.918 9 N -0.331 5.331 10 C 0.043 3.957 11 C -0.027 4.027 12 N -0.323 5.323 13 C 0.339 3.661 14 O -0.470 6.470 15 C -0.222 4.222 16 C -0.140 4.140 17 C -0.178 4.178 18 H 0.132 0.868 19 C 0.001 3.999 20 O -0.317 6.317 21 C 0.023 3.977 22 C -0.021 4.021 23 C 0.007 3.993 24 H 0.062 0.938 25 H 0.087 0.913 26 H 0.019 0.981 27 H 0.126 0.874 28 H 0.089 0.911 29 H 0.114 0.886 30 H 0.158 0.842 31 H 0.129 0.871 32 H 0.113 0.887 33 H 0.126 0.874 34 H 0.109 0.891 35 H 0.092 0.908 36 H 0.100 0.900 37 H 0.091 0.909 38 H 0.023 0.977 Dipole moment (debyes) X Y Z Total from point charges -4.063 -9.062 -10.274 14.289 hybrid contribution 0.373 1.100 0.940 1.494 sum -3.690 -7.962 -9.334 12.811 Atomic orbital electron populations 1.70144 1.06709 1.26201 1.54423 1.25913 0.96002 1.01534 0.99873 0.85223 0.78659 0.79706 0.76888 1.19207 1.21128 1.22119 1.19471 0.92081 0.85254 1.43347 0.91763 1.44186 1.40443 1.03772 1.44666 1.20922 0.88797 0.97112 0.88844 1.22514 1.01530 0.82867 0.95757 1.48083 1.35078 1.08190 1.40994 1.19743 0.81391 0.82287 0.82660 1.90624 1.67340 1.34378 1.54648 1.23140 0.89674 1.12611 0.96737 1.23387 0.92608 0.92814 1.05228 1.24500 0.96880 0.94973 1.01449 0.86756 1.23098 0.84666 1.02645 0.89495 1.89513 1.27623 1.37592 1.76966 1.23197 0.98821 0.86870 0.88808 1.22065 0.89374 0.99998 0.90660 1.21335 0.98088 0.86593 0.93275 0.93766 0.91275 0.98066 0.87402 0.91106 0.88563 0.84224 0.87150 0.88714 0.87393 0.89150 0.90755 0.89975 0.90892 0.97657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.07 11.49 21.65 0.25 -51.82 16 2 C -0.04 -1.93 4.92 84.86 0.42 -1.51 16 3 Si 0.97 42.53 29.58 68.60 2.03 44.56 16 4 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 5 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 6 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 7 C -0.27 -14.26 9.52 84.03 0.80 -13.46 16 8 H 0.06 3.32 7.87 -2.91 -0.02 3.30 16 9 N -0.61 -29.30 2.93 -698.21 -2.05 -31.35 16 10 C 0.17 7.45 5.47 86.41 0.47 7.93 16 11 C 0.10 3.23 6.41 86.41 0.55 3.78 16 12 N -0.59 -20.98 2.96 -817.92 -2.42 -23.40 16 13 C 0.55 19.38 7.17 87.66 0.63 20.01 16 14 O -0.59 -25.02 16.50 -3.04 -0.05 -25.07 16 15 C -0.22 -5.71 1.44 -51.91 -0.07 -5.79 16 16 C -0.10 -2.16 8.21 30.60 0.25 -1.91 16 17 C -0.16 -3.56 7.11 -9.77 -0.07 -3.63 16 18 H 0.11 2.80 8.14 -2.39 -0.02 2.78 16 19 C 0.08 1.39 7.45 72.48 0.54 1.93 16 20 O -0.40 -9.77 11.72 -148.98 -1.75 -11.52 16 21 C 0.10 2.20 7.41 72.48 0.54 2.74 16 22 C 0.10 3.79 6.59 86.41 0.57 4.36 16 23 C 0.13 5.65 6.68 86.41 0.58 6.23 16 24 H 0.25 13.66 8.31 -92.71 -0.77 12.89 16 25 H 0.07 3.35 6.38 -2.39 -0.02 3.34 16 26 H 0.00 0.06 8.14 -2.38 -0.02 0.04 16 27 H 0.11 2.89 5.08 -2.39 -0.01 2.88 16 28 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 30 H 0.14 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.11 1.69 8.14 -2.38 -0.02 1.67 16 32 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.09 2.12 8.02 -2.38 -0.02 2.10 16 35 H 0.07 2.58 8.14 -2.38 -0.02 2.56 16 36 H 0.08 3.02 7.00 -2.39 -0.02 3.00 16 37 H 0.07 2.95 7.93 -2.39 -0.02 2.93 16 38 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 Total: -1.00 -67.65 306.89 2.27 -65.39 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: 1.05 Total: 12.52 kcal Atomic # 6 Polarization: 15.49 SS G_CDS: 5.20 Total: 20.69 kcal Atomic # 7 Polarization: -102.35 SS G_CDS: -4.22 Total: -106.57 kcal Atomic # 8 Polarization: -34.80 SS G_CDS: -1.80 Total: -36.59 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -67.65 2.27 -65.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689106476.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.018 kcal (2) G-P(sol) polarization free energy of solvation -67.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds