Wall clock time and date at job start Mon Mar 30 2020 04:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31015 * 1 3 3 Si 1.86804 * 119.99889 * 2 1 4 4 H 1.48502 * 109.47020 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47325 * 300.00023 * 3 2 1 6 6 H 1.48508 * 109.47037 * 60.00286 * 3 2 1 7 7 C 1.39583 * 120.00545 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00620 * 180.02562 * 7 2 1 9 9 N 1.36127 * 119.99515 * 359.97438 * 7 2 1 10 10 C 1.34772 * 119.99948 * 179.97438 * 9 7 2 11 11 O 1.21504 * 119.99915 * 0.02562 * 10 9 7 12 12 C 1.48828 * 119.99950 * 180.02562 * 10 9 7 13 13 O 1.21437 * 120.00562 * 0.02562 * 12 10 9 14 14 N 1.34781 * 119.99755 * 180.02562 * 12 10 9 15 15 C 1.46504 * 119.99836 * 180.02562 * 14 12 10 16 16 C 1.52995 * 109.47290 * 180.02562 * 15 14 12 17 17 C 1.53953 * 113.58191 * 175.00165 * 16 15 14 18 18 C 1.52903 * 86.78369 * 139.33584 * 17 16 15 19 19 C 1.52910 * 121.14315 * 209.37282 * 18 17 16 20 20 C 1.53950 * 86.78717 * 209.38472 * 19 18 17 21 21 C 1.52917 * 121.13601 * 100.81371 * 18 17 16 22 22 C 1.52905 * 88.04187 * 335.09639 * 18 17 16 23 23 H 0.96997 * 119.99533 * 0.02562 * 1 2 3 24 24 H 0.97001 * 119.99717 * 0.02562 * 9 7 2 25 25 H 0.96996 * 120.00393 * 359.97438 * 14 12 10 26 26 H 1.08997 * 109.47470 * 59.99630 * 15 14 12 27 27 H 1.09002 * 109.47101 * 300.00010 * 15 14 12 28 28 H 1.09000 * 112.82541 * 43.90669 * 16 15 14 29 29 H 1.08997 * 113.66155 * 24.86247 * 17 16 15 30 30 H 1.09003 * 113.74418 * 253.81943 * 17 16 15 31 31 H 1.09007 * 113.65999 * 323.86104 * 19 18 17 32 32 H 1.09002 * 113.66292 * 94.90614 * 19 18 17 33 33 H 1.09001 * 113.57502 * 270.13001 * 20 19 18 34 34 H 1.09001 * 113.65122 * 139.34775 * 20 19 18 35 35 H 1.09001 * 113.65915 * 265.09556 * 21 18 17 36 36 H 1.08993 * 113.66018 * 36.14469 * 21 18 17 37 37 H 1.09007 * 113.66063 * 139.37650 * 22 18 17 38 38 H 1.08999 * 113.66512 * 270.43076 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2441 1.6178 0.0000 4 1 3.7042 1.3464 0.0006 5 1 1.8854 2.3965 -1.2125 6 1 1.8854 2.3965 1.2126 7 6 2.0082 -1.2088 -0.0005 8 1 3.0881 -1.2088 -0.0001 9 7 1.3276 -2.3877 -0.0005 10 6 2.0014 -3.5548 -0.0016 11 8 3.2165 -3.5548 -0.0021 12 6 1.2573 -4.8437 -0.0022 13 8 0.0430 -4.8438 -0.0022 14 7 1.9313 -6.0109 -0.0027 15 6 1.1988 -7.2797 -0.0038 16 6 2.1930 -8.4426 -0.0036 17 6 1.5248 -9.8242 0.1182 18 6 2.5374 -10.3098 -0.9194 19 6 2.2000 -11.4507 -1.8799 20 6 3.7043 -11.7780 -1.8821 21 6 3.7799 -11.0979 -0.5031 22 6 2.6451 -8.8666 -1.4128 23 1 -0.4849 0.8401 -0.0004 24 1 0.3575 -2.3876 -0.0005 25 1 2.9012 -6.0109 -0.0031 26 1 0.5724 -7.3369 -0.8940 27 1 0.5718 -7.3380 0.8859 28 1 3.0174 -8.2939 0.6938 29 1 0.4935 -9.8439 -0.2342 30 1 1.6468 -10.2859 1.0981 31 1 1.5832 -12.2307 -1.4333 32 1 1.8243 -11.1129 -2.8458 33 1 4.2632 -11.2545 -2.6578 34 1 3.9195 -12.8462 -1.8539 35 1 4.6665 -10.4780 -0.3690 36 1 3.6073 -11.7785 0.3305 37 1 3.6632 -8.5621 -1.6558 38 1 1.9287 -8.6172 -2.1956 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691027885.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:26 Heat of formation + Delta-G solvation = -42.704842 kcal Electronic energy + Delta-G solvation = -19541.021385 eV Core-core repulsion = 16384.351452 eV Total energy + Delta-G solvation = -3156.669933 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.71842 -39.34505 -37.23228 -35.85284 -34.36324 -33.28350 -31.37189 -27.82764 -26.00384 -25.97337 -25.65782 -23.47212 -22.10724 -20.54295 -19.23814 -18.29151 -18.12947 -16.98397 -15.93363 -15.80398 -15.41713 -15.25050 -14.92049 -14.68894 -13.96990 -13.79746 -13.54527 -13.00856 -12.91620 -12.70637 -12.45524 -12.25209 -11.82498 -11.76473 -11.64116 -11.20931 -11.06367 -10.90059 -10.50645 -10.40395 -10.38140 -10.32746 -10.24259 -9.91080 -9.72113 -8.68810 -8.24890 -8.21192 -6.65888 -3.98244 2.47674 3.14795 3.16921 3.23652 3.45737 4.06804 4.19450 4.21384 4.30550 4.41959 4.56510 4.59496 4.62096 5.09407 5.13623 5.20256 5.21705 5.28647 5.43279 5.47334 5.59159 5.64105 5.65289 5.69037 5.73467 5.81772 5.92252 5.94036 6.09306 6.13645 6.26207 6.37807 6.83482 7.32348 7.71790 7.91213 8.34877 8.65547 8.97856 9.33632 9.86679 10.49170 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.051566 B = 0.003099 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.867684 B = 9033.221083 C = 9336.662040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.030 3.970 3 Si 0.938 3.062 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.305 4.305 8 H 0.113 0.887 9 N -0.500 5.500 10 C 0.395 3.605 11 O -0.598 6.598 12 C 0.512 3.488 13 O -0.548 6.548 14 N -0.713 5.713 15 C 0.131 3.869 16 C -0.120 4.120 17 C -0.117 4.117 18 C -0.106 4.106 19 C -0.129 4.129 20 C -0.140 4.140 21 C -0.117 4.117 22 C -0.110 4.110 23 H 0.280 0.720 24 H 0.405 0.595 25 H 0.409 0.591 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.684 -19.649 -1.655 20.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.177 4.177 3 Si 0.764 3.236 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.436 4.436 8 H 0.131 0.869 9 N -0.135 5.135 10 C 0.179 3.821 11 O -0.487 6.487 12 C 0.296 3.704 13 O -0.425 6.425 14 N -0.367 5.367 15 C 0.007 3.993 16 C -0.139 4.139 17 C -0.154 4.154 18 C -0.106 4.106 19 C -0.166 4.166 20 C -0.178 4.178 21 C -0.155 4.155 22 C -0.147 4.147 23 H 0.090 0.910 24 H 0.240 0.760 25 H 0.245 0.755 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.115 0.885 29 H 0.104 0.896 30 H 0.088 0.912 31 H 0.099 0.901 32 H 0.086 0.914 33 H 0.097 0.903 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.100 0.900 37 H 0.089 0.911 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.429 -19.503 -1.655 19.871 hybrid contribution 0.165 0.769 0.020 0.787 sum 3.593 -18.733 -1.636 19.145 Atomic orbital electron populations 1.69494 1.06521 1.29222 1.45521 1.25589 0.95629 1.00474 0.95967 0.85672 0.79874 0.80034 0.78053 1.18715 1.20293 1.20299 1.19927 0.93987 0.81886 1.47795 0.86946 1.41577 1.10498 1.04251 1.57139 1.18990 0.87820 0.84272 0.91008 1.90576 1.12914 1.86675 1.58512 1.20684 0.87498 0.85972 0.76245 1.90684 1.14090 1.88164 1.49587 1.45670 1.11094 1.04669 1.75301 1.21329 0.94129 0.81752 1.02118 1.22766 0.98903 0.93833 0.98363 1.22775 0.98686 0.94941 0.99039 1.22422 0.96890 0.94051 0.97283 1.22753 0.96439 0.97961 0.99453 1.22814 0.96932 1.00334 0.97702 1.22650 0.97057 0.98510 0.97259 1.22788 1.02127 0.93278 0.96532 0.90988 0.76002 0.75510 0.91551 0.91593 0.88506 0.89591 0.91189 0.90136 0.91446 0.90259 0.91717 0.91291 0.89979 0.91092 0.89494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.50 13.03 55.53 0.72 -22.78 16 2 C 0.03 0.79 5.51 -17.40 -0.10 0.69 16 3 Si 0.94 20.19 29.56 -169.99 -5.02 15.17 16 4 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 5 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 6 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 7 C -0.31 -8.49 9.67 -15.14 -0.15 -8.64 16 8 H 0.11 3.19 7.15 -52.49 -0.38 2.82 16 9 N -0.50 -13.56 5.25 -11.59 -0.06 -13.62 16 10 C 0.39 10.08 7.82 -11.88 -0.09 9.99 16 11 O -0.60 -16.17 16.03 5.36 0.09 -16.09 16 12 C 0.51 11.30 7.87 -11.88 -0.09 11.21 16 13 O -0.55 -13.08 16.47 5.42 0.09 -12.99 16 14 N -0.71 -12.30 5.55 -60.93 -0.34 -12.64 16 15 C 0.13 1.79 5.51 -4.04 -0.02 1.77 16 16 C -0.12 -1.25 3.76 -89.64 -0.34 -1.58 16 17 C -0.12 -1.03 7.40 -26.28 -0.19 -1.23 16 18 C -0.11 -0.91 1.11 -154.71 -0.17 -1.08 16 19 C -0.13 -1.00 7.84 -26.28 -0.21 -1.20 16 20 C -0.14 -1.03 8.08 -25.75 -0.21 -1.24 16 21 C -0.12 -0.91 7.84 -26.28 -0.21 -1.12 16 22 C -0.11 -1.08 7.39 -26.28 -0.19 -1.27 16 23 H 0.28 6.98 8.30 -40.82 -0.34 6.64 16 24 H 0.40 11.05 7.35 -40.82 -0.30 10.75 16 25 H 0.41 6.67 7.93 -40.82 -0.32 6.34 16 26 H 0.07 0.94 7.85 -51.93 -0.41 0.53 16 27 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.09 0.75 8.10 -51.93 -0.42 0.33 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.08 0.58 8.14 -51.92 -0.42 0.15 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.09 0.88 7.90 -51.93 -0.41 0.47 16 LS Contribution 322.99 15.07 4.87 4.87 Total: -1.00 -30.57 322.99 -7.22 -37.79 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: -5.60 Total: 13.98 kcal Atomic # 6 Polarization: 8.27 SS G_CDS: -1.97 Total: 6.30 kcal Atomic # 7 Polarization: -49.36 SS G_CDS: 0.32 Total: -49.04 kcal Atomic # 8 Polarization: -29.25 SS G_CDS: 0.18 Total: -29.08 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.57 -7.22 -37.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691027885.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.911 kcal (2) G-P(sol) polarization free energy of solvation -30.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds