Wall clock time and date at job start Mon Mar 30 2020 04:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48507 * 109.47309 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47510 * 300.00508 * 3 2 1 6 6 H 1.48506 * 109.47246 * 60.00543 * 3 2 1 7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47127 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47131 * 179.97438 * 11 10 9 13 13 H 1.08997 * 109.47395 * 305.00575 * 12 11 10 14 14 N 1.46907 * 109.47034 * 65.00090 * 12 11 10 15 15 C 1.50702 * 109.47417 * 184.99962 * 12 11 10 16 16 O 1.21276 * 119.99842 * 260.00556 * 15 12 11 17 17 N 1.34774 * 119.99654 * 79.99812 * 15 12 11 18 18 C 1.46502 * 120.00078 * 179.97438 * 17 15 12 19 19 C 1.50697 * 109.47244 * 180.02562 * 18 17 15 20 20 C 1.41382 * 126.57512 * 90.00652 * 19 18 17 21 21 C 1.34517 * 106.83760 * 179.97438 * 20 19 18 22 22 O 1.34297 * 108.42144 * 0.02562 * 21 20 19 23 23 C 1.34305 * 109.47954 * 359.76840 * 22 21 20 24 24 H 0.96996 * 120.00505 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 26 26 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 27 27 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 28 28 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 29 29 H 1.08996 * 109.46952 * 300.00302 * 11 10 9 30 30 H 1.09001 * 109.46832 * 60.00321 * 11 10 9 31 31 H 1.00898 * 110.99789 * 59.99986 * 14 12 11 32 32 H 1.00899 * 111.00310 * 183.94943 * 14 12 11 33 33 H 0.97003 * 120.00109 * 0.02562 * 17 15 12 34 34 H 1.08998 * 109.47182 * 300.01147 * 18 17 15 35 35 H 1.09007 * 109.46701 * 60.00300 * 18 17 15 36 36 H 1.07995 * 126.58522 * 359.97438 * 20 19 18 37 37 H 1.08000 * 125.78584 * 179.97438 * 21 20 19 38 38 H 1.07997 * 125.79199 * 180.24287 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4805 -4.9871 -0.0012 12 6 2.4747 -6.1499 -0.0018 13 1 3.1589 -6.0426 -0.8435 14 7 3.2379 -6.1424 1.2534 15 6 1.7254 -7.4516 -0.1263 16 8 1.5132 -8.1256 0.8593 17 7 1.2911 -7.8663 -1.3328 18 6 0.5632 -9.1319 -1.4540 19 6 0.1930 -9.3624 -2.8965 20 6 0.9667 -10.0397 -3.8669 21 6 0.2631 -10.0144 -5.0131 22 8 -0.8887 -9.3610 -4.7898 23 6 -0.9388 -8.9674 -3.5067 24 1 -0.4851 0.8400 0.0004 25 1 0.6242 -2.5567 -0.8904 26 1 0.6248 -2.5571 0.8896 27 1 2.8721 -3.6042 -0.8905 28 1 2.8721 -3.6043 0.8895 29 1 0.8535 -5.0450 0.8885 30 1 0.8542 -5.0446 -0.8914 31 1 2.6256 -6.2406 2.0494 32 1 3.9456 -6.8616 1.2508 33 1 1.4611 -7.3272 -2.1211 34 1 1.1949 -9.9492 -1.1062 35 1 -0.3422 -9.0896 -0.8485 36 1 1.9363 -10.4908 -3.7168 37 1 0.5725 -10.4457 -5.9537 38 1 -1.7494 -8.4242 -3.0438 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691562829.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:42 Heat of formation + Delta-G solvation = -43.550763 kcal Electronic energy + Delta-G solvation = -19268.522755 eV Core-core repulsion = 16111.816140 eV Total energy + Delta-G solvation = -3156.706615 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.92540 -39.91751 -36.01643 -35.39356 -33.32130 -32.98657 -31.33095 -30.19119 -28.13098 -26.77077 -24.58491 -22.33647 -21.96225 -20.84841 -20.15155 -19.98311 -18.05733 -17.01590 -16.46026 -16.33405 -16.04797 -15.62179 -15.16218 -14.92852 -14.42626 -14.27968 -13.81883 -13.56582 -13.15758 -12.99481 -12.55812 -12.39897 -12.14929 -11.75668 -11.45468 -11.13517 -10.75115 -10.62844 -10.40859 -10.35592 -10.07396 -9.59361 -9.24403 -9.19321 -9.02415 -8.98375 -8.51562 -8.28745 -5.94344 -3.95811 1.37686 2.08505 2.58489 2.78549 3.34426 3.34787 3.42162 3.46986 4.37688 4.45838 4.50946 4.62277 4.68293 4.89644 5.14108 5.21562 5.29178 5.41492 5.42565 5.44353 5.68750 5.79734 5.95393 6.07223 6.14046 6.27137 6.46262 6.73220 6.83963 7.02948 7.11691 7.26230 7.42127 7.53832 7.76438 7.91868 8.07474 8.13244 8.50992 9.12153 9.68001 11.17163 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.020552 B = 0.003370 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.049648 B = 8307.806430 C = 9242.831669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.054 3.946 3 Si 0.890 3.110 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.515 4.515 8 H 0.056 0.944 9 C 0.019 3.981 10 C -0.100 4.100 11 C -0.103 4.103 12 C 0.078 3.922 13 H 0.100 0.900 14 N -0.811 5.811 15 C 0.482 3.518 16 O -0.552 6.552 17 N -0.726 5.726 18 C 0.189 3.811 19 C -0.205 4.205 20 C -0.201 4.201 21 C -0.042 4.042 22 O -0.175 6.175 23 C -0.012 4.012 24 H 0.259 0.741 25 H 0.012 0.988 26 H 0.014 0.986 27 H 0.044 0.956 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.350 0.650 32 H 0.338 0.662 33 H 0.404 0.596 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.149 0.851 37 H 0.203 0.797 38 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.139 -21.451 -8.512 23.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.718 3.282 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.554 4.554 8 H 0.074 0.926 9 C -0.018 4.018 10 C -0.138 4.138 11 C -0.141 4.141 12 C -0.038 4.038 13 H 0.118 0.882 14 N -0.340 5.340 15 C 0.268 3.732 16 O -0.429 6.429 17 N -0.379 5.379 18 C 0.066 3.934 19 C -0.207 4.207 20 C -0.220 4.220 21 C -0.110 4.110 22 O -0.069 6.069 23 C -0.081 4.081 24 H 0.068 0.932 25 H 0.030 0.970 26 H 0.032 0.968 27 H 0.063 0.937 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.164 0.836 32 H 0.150 0.850 33 H 0.239 0.761 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.167 0.833 37 H 0.220 0.780 38 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 0.848 -21.029 -8.201 22.587 hybrid contribution 0.207 0.065 -0.234 0.319 sum 1.055 -20.964 -8.435 22.622 Atomic orbital electron populations 1.69976 1.06052 1.26341 1.51381 1.25034 0.94831 0.99235 0.95519 0.86562 0.80195 0.83917 0.77485 1.19707 1.21127 1.21081 1.21327 0.93127 0.91103 1.49826 0.92600 1.19128 0.94118 0.91661 0.96916 1.21540 0.98766 0.92302 1.01160 1.21647 0.96536 0.94028 1.01937 1.21765 0.95855 0.90849 0.95309 0.88218 1.59047 1.17357 1.54228 1.03324 1.22584 0.79139 0.88918 0.82603 1.90669 1.57686 1.57463 1.37112 1.46263 1.58014 1.23245 1.10339 1.19471 0.96916 0.86758 0.90261 1.20467 0.96638 1.06326 0.97275 1.21766 1.02157 1.05247 0.92847 1.24064 0.85434 1.00692 1.00761 1.84113 1.37360 1.57029 1.28439 1.24084 1.00589 1.01941 0.81485 0.93181 0.96974 0.96779 0.93699 0.91821 0.91921 0.91947 0.83576 0.85047 0.76136 0.90809 0.90761 0.83332 0.78003 0.77746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.33 13.29 55.43 0.74 -26.59 16 2 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 4 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.52 -14.81 9.11 -34.44 -0.31 -15.13 16 8 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 9 C 0.02 0.49 4.97 -27.88 -0.14 0.35 16 10 C -0.10 -2.04 5.04 -26.73 -0.13 -2.18 16 11 C -0.10 -1.70 4.84 -26.73 -0.13 -1.83 16 12 C 0.08 1.06 3.15 -68.86 -0.22 0.85 16 13 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 14 N -0.81 -11.18 8.44 -5.65 -0.05 -11.23 16 15 C 0.48 6.54 7.07 -10.99 -0.08 6.46 16 16 O -0.55 -9.14 16.25 5.56 0.09 -9.05 16 17 N -0.73 -7.88 5.55 -61.47 -0.34 -8.22 16 18 C 0.19 1.90 6.19 -5.19 -0.03 1.87 16 19 C -0.21 -1.83 5.53 -104.74 -0.58 -2.41 16 20 C -0.20 -1.60 10.87 -39.70 -0.43 -2.03 16 21 C -0.04 -0.30 12.09 29.42 0.36 0.05 16 22 O -0.17 -1.55 10.65 5.72 0.06 -1.49 16 23 C -0.01 -0.10 12.01 29.42 0.35 0.25 16 24 H 0.26 7.40 8.31 -40.82 -0.34 7.07 16 25 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 26 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.06 1.35 7.75 -51.93 -0.40 0.94 16 29 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.35 5.02 8.58 -39.29 -0.34 4.68 16 32 H 0.34 4.03 9.06 -39.29 -0.36 3.67 16 33 H 0.40 3.81 8.46 -40.82 -0.35 3.47 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.15 0.98 8.06 -52.49 -0.42 0.56 16 37 H 0.20 0.72 8.06 -52.49 -0.42 0.30 16 38 H 0.21 1.25 8.06 -52.49 -0.42 0.82 16 LS Contribution 330.58 15.07 4.98 4.98 Total: -1.00 -33.81 330.58 -6.62 -40.43 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -5.63 Total: 6.52 kcal Atomic # 6 Polarization: -10.81 SS G_CDS: -1.44 Total: -12.26 kcal Atomic # 7 Polarization: -46.39 SS G_CDS: 0.35 Total: -46.04 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.15 Total: -10.55 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.81 -6.62 -40.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691562829.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.120 kcal (2) G-P(sol) polarization free energy of solvation -33.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds