Wall clock time and date at job start Mon Mar 30 2020 04:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48507 * 109.47309 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47510 * 300.00508 * 3 2 1 6 6 H 1.48506 * 109.47246 * 60.00543 * 3 2 1 7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47127 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47131 * 179.97438 * 11 10 9 13 13 H 1.08997 * 109.47395 * 305.00575 * 12 11 10 14 14 N 1.46907 * 109.47034 * 65.00090 * 12 11 10 15 15 C 1.50702 * 109.47417 * 184.99962 * 12 11 10 16 16 O 1.21276 * 119.99842 * 260.00556 * 15 12 11 17 17 N 1.34774 * 119.99654 * 79.99812 * 15 12 11 18 18 C 1.46502 * 120.00078 * 179.97438 * 17 15 12 19 19 C 1.50697 * 109.47244 * 180.02562 * 18 17 15 20 20 C 1.41382 * 126.57512 * 90.00652 * 19 18 17 21 21 C 1.34517 * 106.83760 * 179.97438 * 20 19 18 22 22 O 1.34297 * 108.42144 * 0.02562 * 21 20 19 23 23 C 1.34305 * 109.47954 * 359.76840 * 22 21 20 24 24 H 0.96996 * 120.00505 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 26 26 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 27 27 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 28 28 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 29 29 H 1.08996 * 109.46952 * 300.00302 * 11 10 9 30 30 H 1.09001 * 109.46832 * 60.00321 * 11 10 9 31 31 H 1.00898 * 110.99789 * 59.99986 * 14 12 11 32 32 H 1.00899 * 111.00310 * 183.94943 * 14 12 11 33 33 H 0.97003 * 120.00109 * 0.02562 * 17 15 12 34 34 H 1.08998 * 109.47182 * 300.01147 * 18 17 15 35 35 H 1.09007 * 109.46701 * 60.00300 * 18 17 15 36 36 H 1.07995 * 126.58522 * 359.97438 * 20 19 18 37 37 H 1.08000 * 125.78584 * 179.97438 * 21 20 19 38 38 H 1.07997 * 125.79199 * 180.24287 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4805 -4.9871 -0.0012 12 6 2.4747 -6.1499 -0.0018 13 1 3.1589 -6.0426 -0.8435 14 7 3.2379 -6.1424 1.2534 15 6 1.7254 -7.4516 -0.1263 16 8 1.5132 -8.1256 0.8593 17 7 1.2911 -7.8663 -1.3328 18 6 0.5632 -9.1319 -1.4540 19 6 0.1930 -9.3624 -2.8965 20 6 0.9667 -10.0397 -3.8669 21 6 0.2631 -10.0144 -5.0131 22 8 -0.8887 -9.3610 -4.7898 23 6 -0.9388 -8.9674 -3.5067 24 1 -0.4851 0.8400 0.0004 25 1 0.6242 -2.5567 -0.8904 26 1 0.6248 -2.5571 0.8896 27 1 2.8721 -3.6042 -0.8905 28 1 2.8721 -3.6043 0.8895 29 1 0.8535 -5.0450 0.8885 30 1 0.8542 -5.0446 -0.8914 31 1 2.6256 -6.2406 2.0494 32 1 3.9456 -6.8616 1.2508 33 1 1.4611 -7.3272 -2.1211 34 1 1.1949 -9.9492 -1.1062 35 1 -0.3422 -9.0896 -0.8485 36 1 1.9363 -10.4908 -3.7168 37 1 0.5725 -10.4457 -5.9537 38 1 -1.7494 -8.4242 -3.0438 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691562829.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:41 Heat of formation + Delta-G solvation = -68.552201 kcal Electronic energy + Delta-G solvation = -19269.606899 eV Core-core repulsion = 16111.816140 eV Total energy + Delta-G solvation = -3157.790759 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.53747 -41.01291 -37.25649 -36.47804 -35.22223 -33.74896 -33.10916 -30.84336 -29.60919 -27.93366 -26.11821 -23.91007 -22.53767 -21.75725 -21.57718 -21.11720 -18.81643 -18.43345 -18.01200 -17.33614 -17.02269 -16.65834 -16.46003 -16.14210 -15.58730 -15.55672 -14.96497 -14.61534 -14.39157 -14.26830 -13.71563 -13.62748 -13.30332 -13.11919 -12.90812 -12.79691 -12.49032 -12.33420 -12.17608 -11.57362 -11.38279 -11.22304 -10.99459 -10.80448 -10.51626 -10.18466 -9.74484 -9.49195 -8.16457 -6.26759 0.76415 1.41823 1.42394 1.44049 1.49708 1.56053 2.23650 2.42002 2.45046 3.16694 3.53296 3.70032 3.84209 3.85775 4.02380 4.10591 4.17947 4.52489 4.53789 4.60059 4.69104 4.72253 4.94419 5.06251 5.15251 5.22029 5.27684 5.33666 5.35880 5.49308 5.62074 5.85731 5.94892 6.05045 6.13520 6.31647 6.43148 6.51678 6.91324 7.11633 7.42361 8.95542 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.020552 B = 0.003370 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.049648 B = 8307.806430 C = 9242.831669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.964 3.036 4 H -0.261 1.261 5 H -0.277 1.277 6 H -0.280 1.280 7 C -0.539 4.539 8 H 0.060 0.940 9 C 0.021 3.979 10 C -0.084 4.084 11 C -0.094 4.094 12 C 0.088 3.912 13 H 0.122 0.878 14 N -0.818 5.818 15 C 0.486 3.514 16 O -0.584 6.584 17 N -0.712 5.712 18 C 0.193 3.807 19 C -0.216 4.216 20 C -0.216 4.216 21 C -0.038 4.038 22 O -0.187 6.187 23 C -0.019 4.019 24 H 0.262 0.738 25 H -0.008 1.008 26 H -0.016 1.016 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.047 0.953 30 H 0.072 0.928 31 H 0.346 0.654 32 H 0.349 0.651 33 H 0.413 0.587 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.160 0.840 37 H 0.236 0.764 38 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.356 -21.730 -9.771 23.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.200 4.200 3 Si 0.788 3.212 4 H -0.185 1.185 5 H -0.203 1.203 6 H -0.206 1.206 7 C -0.577 4.577 8 H 0.078 0.922 9 C -0.016 4.016 10 C -0.122 4.122 11 C -0.132 4.132 12 C -0.028 4.028 13 H 0.140 0.860 14 N -0.347 5.347 15 C 0.271 3.729 16 O -0.464 6.464 17 N -0.364 5.364 18 C 0.070 3.930 19 C -0.218 4.218 20 C -0.235 4.235 21 C -0.105 4.105 22 O -0.082 6.082 23 C -0.087 4.087 24 H 0.071 0.929 25 H 0.011 0.989 26 H 0.003 0.997 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.065 0.935 30 H 0.091 0.909 31 H 0.159 0.841 32 H 0.163 0.837 33 H 0.249 0.751 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.178 0.822 37 H 0.252 0.748 38 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 2.080 -21.324 -9.494 23.435 hybrid contribution -0.206 0.116 0.124 0.267 sum 1.874 -21.208 -9.370 23.262 Atomic orbital electron populations 1.70104 1.07793 1.27566 1.52147 1.25987 0.95764 1.03364 0.94926 0.85417 0.79171 0.78868 0.77703 1.18523 1.20297 1.20599 1.21773 0.93586 0.92495 1.49829 0.92213 1.19059 0.94579 0.93473 0.94468 1.21285 0.97541 0.92122 1.01224 1.21457 0.96726 0.93297 1.01760 1.21618 0.95442 0.89645 0.96121 0.86042 1.59048 1.17593 1.54894 1.03190 1.22445 0.78963 0.88666 0.82840 1.90660 1.58997 1.58417 1.38315 1.46190 1.56888 1.23466 1.09859 1.19427 0.96398 0.86048 0.91149 1.20427 0.97346 1.07274 0.96749 1.21987 1.02861 1.05700 0.92963 1.24737 0.84437 0.99506 1.01802 1.84126 1.38197 1.57345 1.28556 1.24426 1.00942 1.01900 0.81479 0.92899 0.98929 0.99730 0.92656 0.92525 0.93464 0.90927 0.84069 0.83737 0.75068 0.91141 0.91358 0.82244 0.74779 0.76276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.65 13.29 21.45 0.28 -57.37 16 2 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 3 Si 0.96 44.78 29.54 68.60 2.03 46.81 16 4 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 5 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 6 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 7 C -0.54 -31.11 9.11 25.60 0.23 -30.87 16 8 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 9 C 0.02 1.13 4.97 29.85 0.15 1.28 16 10 C -0.08 -3.40 5.04 30.60 0.15 -3.25 16 11 C -0.09 -3.05 4.84 30.59 0.15 -2.90 16 12 C 0.09 2.26 3.15 44.17 0.14 2.40 16 13 H 0.12 2.64 8.14 -2.39 -0.02 2.62 16 14 N -0.82 -21.67 8.44 -171.79 -1.45 -23.12 16 15 C 0.49 12.62 7.07 87.66 0.62 13.24 16 16 O -0.58 -19.05 16.25 -3.02 -0.05 -19.10 16 17 N -0.71 -14.49 5.55 -466.79 -2.59 -17.08 16 18 C 0.19 3.71 6.19 85.63 0.53 4.24 16 19 C -0.22 -3.59 5.53 -19.94 -0.11 -3.70 16 20 C -0.22 -3.07 10.87 22.19 0.24 -2.83 16 21 C -0.04 -0.47 12.09 66.97 0.81 0.34 16 22 O -0.19 -3.04 10.65 -2.45 -0.03 -3.07 16 23 C -0.02 -0.29 12.01 66.97 0.80 0.51 16 24 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 25 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 26 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 27 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 28 H 0.06 2.37 7.75 -2.39 -0.02 2.35 16 29 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.35 9.79 8.58 -89.70 -0.77 9.02 16 32 H 0.35 7.84 9.06 -89.69 -0.81 7.03 16 33 H 0.41 7.01 8.46 -92.71 -0.78 6.23 16 34 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 36 H 0.16 1.82 8.06 -2.91 -0.02 1.80 16 37 H 0.24 0.98 8.06 -2.91 -0.02 0.95 16 38 H 0.22 2.46 8.06 -2.91 -0.02 2.43 16 Total: -1.00 -72.54 330.58 1.09 -71.44 By element: Atomic # 1 Polarization: 24.02 SS G_CDS: -1.28 Total: 22.74 kcal Atomic # 6 Polarization: -25.44 SS G_CDS: 4.18 Total: -21.26 kcal Atomic # 7 Polarization: -93.81 SS G_CDS: -3.75 Total: -97.56 kcal Atomic # 8 Polarization: -22.09 SS G_CDS: -0.08 Total: -22.17 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -72.54 1.09 -71.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691562829.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.892 kcal (2) G-P(sol) polarization free energy of solvation -72.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds