Wall clock time and date at job start Mon Mar 30 2020 04:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.41385 * 126.58065 * 2 1 4 4 C 1.34519 * 106.83948 * 179.97438 * 3 2 1 5 5 O 1.34300 * 108.42028 * 359.74058 * 4 3 2 6 6 C 1.34298 * 109.47713 * 0.43526 * 5 4 3 7 7 C 1.50707 * 125.79113 * 179.82835 * 6 5 4 8 8 N 1.46498 * 109.46927 * 269.69399 * 7 6 5 9 9 C 1.34779 * 119.99978 * 179.97438 * 8 7 6 10 10 O 1.21279 * 119.99890 * 359.97438 * 9 8 7 11 11 C 1.50697 * 119.99775 * 179.97438 * 9 8 7 12 12 H 1.08998 * 109.47793 * 40.00300 * 11 9 8 13 13 N 1.46901 * 109.46912 * 159.99971 * 11 9 8 14 14 C 1.53006 * 109.47301 * 279.99751 * 11 9 8 15 15 C 1.52999 * 109.46997 * 175.00426 * 14 11 9 16 16 C 1.50706 * 109.46573 * 180.02562 * 15 14 11 17 17 H 1.07995 * 120.00167 * 359.72054 * 16 15 14 18 18 C 1.37879 * 119.99394 * 179.97438 * 16 15 14 19 19 N 1.31514 * 120.00338 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99424 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47474 * 90.00322 * 20 18 16 22 22 H 1.48507 * 109.46754 * 210.00056 * 20 18 16 23 23 H 1.48498 * 109.47278 * 329.99887 * 20 18 16 24 24 H 1.08997 * 109.47581 * 270.03865 * 1 2 3 25 25 H 1.09005 * 109.46947 * 30.04245 * 1 2 3 26 26 H 1.09005 * 109.47192 * 150.03921 * 1 2 3 27 27 H 1.07996 * 126.58080 * 359.97438 * 3 2 1 28 28 H 1.08001 * 125.78421 * 180.02562 * 4 3 2 29 29 H 1.08996 * 109.47412 * 149.69272 * 7 6 5 30 30 H 1.09001 * 109.47001 * 29.68746 * 7 6 5 31 31 H 0.97004 * 120.00084 * 359.97438 * 8 7 6 32 32 H 1.00900 * 111.00110 * 60.00140 * 13 11 9 33 33 H 1.00905 * 111.00268 * 183.95255 * 13 11 9 34 34 H 1.09000 * 109.46866 * 55.00213 * 14 11 9 35 35 H 1.09001 * 109.46611 * 295.00330 * 14 11 9 36 36 H 1.09000 * 109.47486 * 60.00167 * 15 14 11 37 37 H 1.09001 * 109.47362 * 299.99445 * 15 14 11 38 38 H 0.96996 * 119.99730 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3495 1.1353 0.0000 4 6 3.6156 0.6810 0.0006 5 8 3.5847 -0.6616 0.0067 6 6 2.3086 -1.0802 0.0005 7 6 1.8521 -2.5164 0.0006 8 7 1.7047 -2.9821 -1.3805 9 6 1.3039 -4.2451 -1.6267 10 8 1.0657 -4.9963 -0.7048 11 6 1.1518 -4.7239 -3.0475 12 1 1.9691 -4.3318 -3.6526 13 7 1.1828 -6.1923 -3.0753 14 6 -0.1824 -4.2313 -3.6117 15 6 -0.2819 -4.6104 -5.0906 16 6 -1.5957 -4.1245 -5.6464 17 1 -2.2922 -3.6020 -5.0074 18 6 -1.9108 -4.3517 -6.9693 19 7 -1.0650 -4.9928 -7.7460 20 14 -3.5390 -3.7489 -7.6584 21 1 -3.3717 -2.3734 -8.1925 22 1 -3.9797 -4.6537 -8.7504 23 1 -4.5601 -3.7405 -6.5802 24 1 -0.3634 0.0007 1.0276 25 1 -0.3633 0.8897 -0.5145 26 1 -0.3634 -0.8904 -0.5132 27 1 2.0367 2.1690 -0.0004 28 1 4.5060 1.2923 0.0011 29 1 0.8937 -2.5930 0.5141 30 1 2.5900 -3.1322 0.5148 31 1 1.8956 -2.3814 -2.1179 32 1 0.4341 -6.5804 -2.5212 33 1 1.1473 -6.5370 -4.0230 34 1 -0.2422 -3.1477 -3.5095 35 1 -1.0022 -4.6938 -3.0621 36 1 -0.2221 -5.6939 -5.1928 37 1 0.5379 -4.1478 -5.6402 38 1 -1.2869 -5.1529 -8.6766 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691633478.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:53 Heat of formation + Delta-G solvation = -41.600205 kcal Electronic energy + Delta-G solvation = -19728.721358 eV Core-core repulsion = 16572.099326 eV Total energy + Delta-G solvation = -3156.622032 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.83473 -39.59385 -35.72437 -35.06795 -34.05099 -32.85277 -30.89988 -29.88947 -28.47688 -26.66954 -25.28455 -23.49532 -21.67964 -20.75374 -20.15787 -19.68920 -17.66983 -17.02353 -16.50174 -16.16644 -15.65284 -15.22802 -14.86308 -14.46626 -14.21563 -13.93652 -13.58786 -13.29620 -13.14581 -13.03627 -12.89631 -12.67350 -12.43765 -12.14169 -11.71941 -11.60026 -11.08716 -10.93876 -10.69619 -9.99616 -9.97767 -9.83187 -9.35521 -9.23936 -9.07947 -8.65453 -8.44503 -8.18249 -6.08999 -4.12154 1.38207 2.30151 2.72213 2.89997 3.26605 3.33502 3.36521 3.42951 4.37946 4.39045 4.66106 4.70509 5.00774 5.12327 5.19451 5.27321 5.28373 5.45612 5.48208 5.57394 5.59882 5.66096 5.75671 5.86606 5.95601 6.27978 6.31372 6.39342 6.51238 6.86776 6.91772 7.41170 7.51179 7.60244 7.67036 7.87974 7.90900 8.30414 8.40818 8.93810 9.52803 11.01940 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.019024 B = 0.004118 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.495678 B = 6798.037117 C = 7685.873124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.151 4.151 3 C -0.215 4.215 4 C -0.031 4.031 5 O -0.170 6.170 6 C -0.039 4.039 7 C 0.206 3.794 8 N -0.732 5.732 9 C 0.528 3.472 10 O -0.537 6.537 11 C 0.076 3.924 12 H 0.097 0.903 13 N -0.831 5.831 14 C -0.137 4.137 15 C 0.024 3.976 16 C -0.524 4.524 17 H 0.055 0.945 18 C 0.059 3.941 19 N -0.893 5.893 20 Si 0.892 3.108 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.274 1.274 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.149 0.851 28 H 0.204 0.796 29 H 0.096 0.904 30 H 0.082 0.918 31 H 0.405 0.595 32 H 0.346 0.654 33 H 0.355 0.645 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.018 0.982 37 H 0.019 0.981 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.501 10.873 14.501 19.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.153 4.153 3 C -0.234 4.234 4 C -0.099 4.099 5 O -0.066 6.066 6 C -0.089 4.089 7 C 0.082 3.918 8 N -0.387 5.387 9 C 0.315 3.685 10 O -0.413 6.413 11 C -0.039 4.039 12 H 0.115 0.885 13 N -0.363 5.363 14 C -0.177 4.177 15 C -0.013 4.013 16 C -0.562 4.562 17 H 0.073 0.927 18 C -0.143 4.143 19 N -0.532 5.532 20 Si 0.720 3.280 21 H -0.206 1.206 22 H -0.211 1.211 23 H -0.199 1.199 24 H 0.088 0.912 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.167 0.833 28 H 0.220 0.780 29 H 0.114 0.886 30 H 0.100 0.900 31 H 0.239 0.761 32 H 0.159 0.841 33 H 0.170 0.830 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.036 0.964 37 H 0.037 0.963 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.314 10.093 15.345 20.161 hybrid contribution -1.730 1.149 -1.308 2.454 sum 6.585 11.241 14.037 19.151 Atomic orbital electron populations 1.20273 0.88860 1.03295 1.02288 1.20365 0.97366 0.91932 1.05643 1.21769 0.92601 0.99952 1.09088 1.24063 0.99817 0.80654 1.05364 1.84039 1.28692 1.22706 1.71170 1.22114 0.81132 0.96118 1.09550 1.19478 1.01599 0.85567 0.85107 1.46089 1.70859 1.14050 1.07696 1.20935 0.74949 0.80510 0.92090 1.90642 1.49580 1.54551 1.46482 1.21467 1.00345 0.90883 0.91242 0.88504 1.58740 1.54499 1.04431 1.18606 1.22386 0.93902 1.00711 1.00704 1.19108 0.97418 0.96863 0.87941 1.21179 1.02843 1.36965 0.95213 0.92711 1.25009 0.97022 0.95108 0.97148 1.69949 1.35727 1.41057 1.06464 0.86588 0.83964 0.78660 0.78774 1.20618 1.21145 1.19878 0.91241 0.91190 0.91056 0.83315 0.77959 0.88607 0.89967 0.76070 0.84121 0.82981 0.92509 0.92619 0.96367 0.96315 0.92877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.85 9.99 36.00 0.36 -0.49 16 2 C -0.15 -1.61 6.16 -104.75 -0.65 -2.26 16 3 C -0.21 -2.00 10.87 -39.70 -0.43 -2.44 16 4 C -0.03 -0.27 12.09 29.42 0.36 0.09 16 5 O -0.17 -1.93 10.65 5.73 0.06 -1.87 16 6 C -0.04 -0.45 6.69 -35.62 -0.24 -0.68 16 7 C 0.21 2.46 5.82 -5.19 -0.03 2.43 16 8 N -0.73 -9.71 5.55 -61.47 -0.34 -10.05 16 9 C 0.53 8.67 7.08 -10.99 -0.08 8.60 16 10 O -0.54 -10.32 16.25 5.56 0.09 -10.23 16 11 C 0.08 1.28 3.21 -68.86 -0.22 1.06 16 12 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 13 N -0.83 -14.31 8.94 -5.65 -0.05 -14.36 16 14 C -0.14 -2.66 4.78 -26.73 -0.13 -2.79 16 15 C 0.02 0.57 4.74 -27.88 -0.13 0.44 16 16 C -0.52 -14.29 9.11 -34.44 -0.31 -14.60 16 17 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 19 N -0.89 -25.96 13.29 55.43 0.74 -25.23 16 20 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 24 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.07 0.73 7.78 -51.93 -0.40 0.33 16 27 H 0.15 1.08 8.06 -52.49 -0.42 0.65 16 28 H 0.20 0.98 8.06 -52.49 -0.42 0.55 16 29 H 0.10 1.11 7.76 -51.93 -0.40 0.71 16 30 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.40 4.87 8.46 -40.82 -0.35 4.52 16 32 H 0.35 6.00 8.58 -39.29 -0.34 5.66 16 33 H 0.35 6.11 7.55 -39.29 -0.30 5.82 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.02 0.46 6.87 -51.93 -0.36 0.10 16 37 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 327.69 15.07 4.94 4.94 Total: -1.00 -31.84 327.69 -6.68 -38.51 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: -5.49 Total: 11.23 kcal Atomic # 6 Polarization: -7.51 SS G_CDS: -1.60 Total: -9.11 kcal Atomic # 7 Polarization: -49.98 SS G_CDS: 0.34 Total: -49.64 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: 0.15 Total: -12.10 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.84 -6.68 -38.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691633478.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.085 kcal (2) G-P(sol) polarization free energy of solvation -31.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds