Wall clock time and date at job start Mon Mar 30 2020 04:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.41385 * 126.58065 * 2 1 4 4 C 1.34519 * 106.83948 * 179.97438 * 3 2 1 5 5 O 1.34300 * 108.42028 * 359.74058 * 4 3 2 6 6 C 1.34298 * 109.47713 * 0.43526 * 5 4 3 7 7 C 1.50707 * 125.79113 * 179.82835 * 6 5 4 8 8 N 1.46498 * 109.46927 * 269.69399 * 7 6 5 9 9 C 1.34779 * 119.99978 * 179.97438 * 8 7 6 10 10 O 1.21279 * 119.99890 * 359.97438 * 9 8 7 11 11 C 1.50697 * 119.99775 * 179.97438 * 9 8 7 12 12 H 1.08998 * 109.47793 * 40.00300 * 11 9 8 13 13 N 1.46901 * 109.46912 * 159.99971 * 11 9 8 14 14 C 1.53006 * 109.47301 * 279.99751 * 11 9 8 15 15 C 1.52999 * 109.46997 * 175.00426 * 14 11 9 16 16 C 1.50706 * 109.46573 * 180.02562 * 15 14 11 17 17 H 1.07995 * 120.00167 * 359.72054 * 16 15 14 18 18 C 1.37879 * 119.99394 * 179.97438 * 16 15 14 19 19 N 1.31514 * 120.00338 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99424 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47474 * 90.00322 * 20 18 16 22 22 H 1.48507 * 109.46754 * 210.00056 * 20 18 16 23 23 H 1.48498 * 109.47278 * 329.99887 * 20 18 16 24 24 H 1.08997 * 109.47581 * 270.03865 * 1 2 3 25 25 H 1.09005 * 109.46947 * 30.04245 * 1 2 3 26 26 H 1.09005 * 109.47192 * 150.03921 * 1 2 3 27 27 H 1.07996 * 126.58080 * 359.97438 * 3 2 1 28 28 H 1.08001 * 125.78421 * 180.02562 * 4 3 2 29 29 H 1.08996 * 109.47412 * 149.69272 * 7 6 5 30 30 H 1.09001 * 109.47001 * 29.68746 * 7 6 5 31 31 H 0.97004 * 120.00084 * 359.97438 * 8 7 6 32 32 H 1.00900 * 111.00110 * 60.00140 * 13 11 9 33 33 H 1.00905 * 111.00268 * 183.95255 * 13 11 9 34 34 H 1.09000 * 109.46866 * 55.00213 * 14 11 9 35 35 H 1.09001 * 109.46611 * 295.00330 * 14 11 9 36 36 H 1.09000 * 109.47486 * 60.00167 * 15 14 11 37 37 H 1.09001 * 109.47362 * 299.99445 * 15 14 11 38 38 H 0.96996 * 119.99730 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3495 1.1353 0.0000 4 6 3.6156 0.6810 0.0006 5 8 3.5847 -0.6616 0.0067 6 6 2.3086 -1.0802 0.0005 7 6 1.8521 -2.5164 0.0006 8 7 1.7047 -2.9821 -1.3805 9 6 1.3039 -4.2451 -1.6267 10 8 1.0657 -4.9963 -0.7048 11 6 1.1518 -4.7239 -3.0475 12 1 1.9691 -4.3318 -3.6526 13 7 1.1828 -6.1923 -3.0753 14 6 -0.1824 -4.2313 -3.6117 15 6 -0.2819 -4.6104 -5.0906 16 6 -1.5957 -4.1245 -5.6464 17 1 -2.2922 -3.6020 -5.0074 18 6 -1.9108 -4.3517 -6.9693 19 7 -1.0650 -4.9928 -7.7460 20 14 -3.5390 -3.7489 -7.6584 21 1 -3.3717 -2.3734 -8.1925 22 1 -3.9797 -4.6537 -8.7504 23 1 -4.5601 -3.7405 -6.5802 24 1 -0.3634 0.0007 1.0276 25 1 -0.3633 0.8897 -0.5145 26 1 -0.3634 -0.8904 -0.5132 27 1 2.0367 2.1690 -0.0004 28 1 4.5060 1.2923 0.0011 29 1 0.8937 -2.5930 0.5141 30 1 2.5900 -3.1322 0.5148 31 1 1.8956 -2.3814 -2.1179 32 1 0.4341 -6.5804 -2.5212 33 1 1.1473 -6.5370 -4.0230 34 1 -0.2422 -3.1477 -3.5095 35 1 -1.0022 -4.6938 -3.0621 36 1 -0.2221 -5.6939 -5.1928 37 1 0.5379 -4.1478 -5.6402 38 1 -1.2869 -5.1529 -8.6766 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691633478.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:53 Heat of formation + Delta-G solvation = -64.490172 kcal Electronic energy + Delta-G solvation = -19729.713942 eV Core-core repulsion = 16572.099326 eV Total energy + Delta-G solvation = -3157.614616 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.60015 -40.91600 -37.19924 -36.25621 -34.90677 -34.82788 -31.77211 -31.67230 -29.41219 -28.06141 -26.55748 -25.04976 -22.45039 -22.37751 -21.31248 -20.70233 -19.00019 -18.24476 -17.95349 -17.32277 -16.68321 -16.53369 -16.31865 -16.02108 -15.47954 -15.26304 -14.79645 -14.54879 -14.36080 -14.02356 -13.97815 -13.65410 -13.62246 -13.44016 -13.25876 -12.92331 -12.68455 -12.52246 -12.39878 -11.79855 -11.73466 -11.29688 -10.86464 -10.56108 -10.55289 -10.23984 -9.67164 -9.41796 -8.20711 -6.31020 0.58402 1.40281 1.41095 1.51501 1.56476 1.57019 1.95194 2.32438 2.41162 3.13178 3.58968 3.75493 3.79074 3.92339 4.01069 4.12558 4.23826 4.26145 4.47294 4.64630 4.67170 4.77032 4.83800 4.84551 4.90439 5.09434 5.14898 5.23707 5.28268 5.47588 5.60340 5.66387 5.81457 6.06466 6.16406 6.21948 6.43571 6.48821 6.84594 7.14248 7.38194 8.90141 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.019024 B = 0.004118 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.495678 B = 6798.037117 C = 7685.873124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.154 4.154 3 C -0.229 4.229 4 C -0.022 4.022 5 O -0.187 6.187 6 C -0.062 4.062 7 C 0.209 3.791 8 N -0.718 5.718 9 C 0.531 3.469 10 O -0.567 6.567 11 C 0.082 3.918 12 H 0.108 0.892 13 N -0.830 5.830 14 C -0.120 4.120 15 C 0.029 3.971 16 C -0.544 4.544 17 H 0.056 0.944 18 C 0.006 3.994 19 N -0.927 5.927 20 Si 0.959 3.041 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.267 1.267 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.059 0.941 27 H 0.169 0.831 28 H 0.241 0.759 29 H 0.098 0.902 30 H 0.078 0.922 31 H 0.412 0.588 32 H 0.345 0.655 33 H 0.353 0.647 34 H 0.066 0.934 35 H 0.047 0.953 36 H 0.003 0.997 37 H 0.001 0.999 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.396 12.694 15.010 21.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.156 4.156 3 C -0.248 4.248 4 C -0.090 4.090 5 O -0.084 6.084 6 C -0.111 4.111 7 C 0.086 3.914 8 N -0.371 5.371 9 C 0.318 3.682 10 O -0.445 6.445 11 C -0.034 4.034 12 H 0.126 0.874 13 N -0.362 5.362 14 C -0.160 4.160 15 C -0.008 4.008 16 C -0.582 4.582 17 H 0.074 0.926 18 C -0.193 4.193 19 N -0.567 5.567 20 Si 0.784 3.216 21 H -0.197 1.197 22 H -0.209 1.209 23 H -0.191 1.191 24 H 0.098 0.902 25 H 0.097 0.903 26 H 0.078 0.922 27 H 0.187 0.813 28 H 0.257 0.743 29 H 0.116 0.884 30 H 0.096 0.904 31 H 0.248 0.752 32 H 0.158 0.842 33 H 0.168 0.832 34 H 0.084 0.916 35 H 0.066 0.934 36 H 0.021 0.979 37 H 0.019 0.981 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 8.218 11.947 15.863 21.492 hybrid contribution -1.640 0.652 -1.444 2.280 sum 6.578 12.600 14.419 20.246 Atomic orbital electron populations 1.20307 0.88306 1.03167 1.02965 1.20656 0.97983 0.92361 1.04624 1.22090 0.92635 1.00608 1.09493 1.24873 1.01187 0.79811 1.03108 1.84028 1.28639 1.24123 1.71584 1.21936 0.81572 0.95767 1.11836 1.19456 1.01710 0.86283 0.83933 1.45991 1.69267 1.13001 1.08850 1.20704 0.75013 0.81210 0.91245 1.90632 1.51232 1.55588 1.47027 1.21395 0.99246 0.90715 0.92000 0.87431 1.58754 1.54373 1.04603 1.18432 1.22131 0.95151 1.01200 0.97520 1.18978 0.95610 0.95598 0.90626 1.21625 1.04041 1.36887 0.95672 0.92614 1.25861 1.00558 0.95254 0.97614 1.70062 1.37636 1.42226 1.06807 0.85544 0.79706 0.78317 0.78072 1.19740 1.20870 1.19136 0.90174 0.90279 0.92163 0.81306 0.74301 0.88367 0.90358 0.75211 0.84206 0.83165 0.91552 0.93426 0.97862 0.98070 0.92755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.58 9.99 71.23 0.71 -0.87 16 2 C -0.15 -3.05 6.16 -19.94 -0.12 -3.17 16 3 C -0.23 -3.73 10.87 22.19 0.24 -3.49 16 4 C -0.02 -0.33 12.09 66.97 0.81 0.48 16 5 O -0.19 -3.97 10.65 -2.40 -0.03 -3.99 16 6 C -0.06 -1.34 6.69 24.84 0.17 -1.17 16 7 C 0.21 4.88 5.82 85.64 0.50 5.37 16 8 N -0.72 -18.45 5.55 -466.79 -2.59 -21.04 16 9 C 0.53 17.15 7.08 87.66 0.62 17.77 16 10 O -0.57 -21.61 16.25 -3.03 -0.05 -21.66 16 11 C 0.08 2.73 3.21 44.17 0.14 2.88 16 12 H 0.11 3.38 8.14 -2.39 -0.02 3.36 16 13 N -0.83 -28.59 8.94 -171.80 -1.54 -30.12 16 14 C -0.12 -4.63 4.78 30.60 0.15 -4.48 16 15 C 0.03 1.42 4.74 29.85 0.14 1.56 16 16 C -0.54 -29.70 9.11 25.60 0.23 -29.46 16 17 H 0.06 2.96 7.74 -2.91 -0.02 2.94 16 18 C 0.01 0.31 5.46 84.66 0.46 0.77 16 19 N -0.93 -54.28 13.29 21.45 0.28 -54.00 16 20 Si 0.96 43.12 29.54 68.60 2.03 45.15 16 21 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 22 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 23 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 24 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 26 H 0.06 1.18 7.78 -2.38 -0.02 1.16 16 27 H 0.17 1.95 8.06 -2.91 -0.02 1.93 16 28 H 0.24 1.44 8.06 -2.91 -0.02 1.42 16 29 H 0.10 2.24 7.76 -2.39 -0.02 2.23 16 30 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.41 9.45 8.46 -92.71 -0.78 8.67 16 32 H 0.34 12.02 8.58 -89.69 -0.77 11.25 16 33 H 0.35 12.31 7.55 -89.69 -0.68 11.63 16 34 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.00 0.16 6.87 -2.39 -0.02 0.14 16 37 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 38 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 Total: -1.00 -67.23 327.69 1.02 -66.21 By element: Atomic # 1 Polarization: 34.42 SS G_CDS: -1.14 Total: 33.28 kcal Atomic # 6 Polarization: -17.87 SS G_CDS: 4.05 Total: -13.82 kcal Atomic # 7 Polarization: -101.32 SS G_CDS: -3.84 Total: -105.16 kcal Atomic # 8 Polarization: -25.57 SS G_CDS: -0.07 Total: -25.65 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -67.23 1.02 -66.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691633478.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.722 kcal (2) G-P(sol) polarization free energy of solvation -67.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds