Wall clock time and date at job start Mon Mar 30 2020 05:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46506 * 109.46904 * 192.99956 * 3 2 1 5 5 C 1.37102 * 119.99925 * 269.99968 * 4 3 2 6 6 H 1.07992 * 119.99943 * 202.51711 * 5 4 3 7 7 C 1.38951 * 119.99879 * 22.52565 * 5 4 3 8 8 N 1.31413 * 120.00054 * 352.40638 * 7 5 4 9 9 Si 1.86792 * 119.99813 * 172.41257 * 7 5 4 10 10 H 1.48502 * 109.47272 * 89.99734 * 9 7 5 11 11 H 1.48505 * 109.47219 * 209.99526 * 9 7 5 12 12 H 1.48501 * 109.47433 * 329.99248 * 9 7 5 13 13 C 1.34771 * 120.00078 * 89.99621 * 4 3 2 14 14 O 1.21299 * 120.00197 * 354.97899 * 13 4 3 15 15 C 1.50697 * 120.00221 * 175.25085 * 13 4 3 16 16 C 1.53002 * 109.47384 * 180.50823 * 15 13 4 17 17 N 1.46891 * 109.54461 * 59.82322 * 16 15 13 18 18 C 1.53180 * 109.54153 * 299.55321 * 16 15 13 19 19 C 1.53090 * 109.15960 * 183.15092 * 18 16 15 20 20 O 1.42907 * 109.41712 * 57.61465 * 19 18 16 21 21 C 1.42898 * 114.09341 * 298.84114 * 20 19 18 22 22 C 1.53088 * 109.41964 * 61.15503 * 21 20 19 23 23 H 4.40643 * 5.51419 * 179.97438 * 4 1 2 24 24 H 1.08994 * 109.47474 * 73.00254 * 3 2 1 25 25 H 1.08998 * 109.47575 * 312.99234 * 3 2 1 26 26 H 0.96999 * 120.00284 * 185.02017 * 8 7 5 27 27 H 1.09000 * 109.47356 * 300.50969 * 15 13 4 28 28 H 1.09006 * 109.47157 * 60.50621 * 15 13 4 29 29 H 1.00903 * 111.00229 * 300.00049 * 17 16 15 30 30 H 1.00906 * 111.00325 * 63.95634 * 17 16 15 31 31 H 1.08992 * 109.52732 * 303.06151 * 18 16 15 32 32 H 1.09000 * 109.51801 * 63.24932 * 18 16 15 33 33 H 1.09004 * 109.48673 * 297.62703 * 19 18 16 34 34 H 1.09003 * 109.48715 * 177.60329 * 19 18 16 35 35 H 1.09003 * 109.48054 * 301.16708 * 21 20 19 36 36 H 1.09002 * 109.48740 * 181.14644 * 21 20 19 37 37 H 1.08994 * 109.52660 * 182.48385 * 22 21 20 38 38 H 1.09007 * 109.52161 * 62.29633 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3468 0.3107 5 6 3.3618 2.2437 -0.7008 6 1 4.0384 3.0711 -0.5465 7 6 2.7221 2.0882 -1.9245 8 7 2.0175 1.0053 -2.1648 9 14 2.8639 3.4185 -3.2281 10 1 4.0417 3.1437 -4.0898 11 1 1.6338 3.4296 -4.0600 12 1 3.0289 4.7400 -2.5710 13 6 3.3580 1.7034 1.5909 14 8 3.0707 0.9434 2.4915 15 6 3.9603 3.0489 1.9038 16 6 4.1203 3.1964 3.4182 17 7 4.9988 2.1339 3.9253 18 6 2.7479 3.0937 4.0909 19 6 2.9080 3.3207 5.5964 20 8 3.5107 4.5965 5.8230 21 6 4.8157 4.7339 5.2572 22 6 4.7324 4.5636 3.7381 23 1 -1.0502 -0.0004 -0.0003 24 1 3.0095 -0.2996 -0.9827 25 1 3.0097 -0.6999 0.7516 26 1 1.6316 0.8627 -3.0431 27 1 4.9365 3.1301 1.4257 28 1 3.3057 3.8360 1.5292 29 1 4.6143 1.2221 3.7285 30 1 5.9299 2.2231 3.5467 31 1 2.0819 3.8507 3.6771 32 1 2.3291 2.1030 3.9144 33 1 3.5416 2.5396 6.0165 34 1 1.9290 3.2911 6.0747 35 1 5.4743 3.9713 5.6730 36 1 5.2112 5.7224 5.4911 37 1 5.7326 4.6242 3.3093 38 1 4.1064 5.3505 3.3172 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691998129.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:26 Heat of formation + Delta-G solvation = -15.726467 kcal Electronic energy + Delta-G solvation = -21232.075468 eV Core-core repulsion = 18076.575406 eV Total energy + Delta-G solvation = -3155.500063 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.83578 -38.33359 -35.78441 -34.56993 -31.89004 -31.55171 -30.71455 -29.41395 -28.66037 -26.27459 -24.60101 -23.30300 -22.55787 -19.39690 -18.91017 -17.72226 -16.66795 -16.31585 -15.59005 -15.57468 -15.20967 -14.76754 -14.55077 -14.35066 -14.21214 -13.81439 -12.94381 -12.75441 -12.40129 -12.22614 -12.01865 -11.73098 -11.63649 -11.33219 -11.25403 -11.11371 -10.84219 -10.72310 -10.54012 -10.14267 -9.90598 -9.60995 -9.31685 -9.25696 -8.71688 -8.44402 -8.06601 -7.97890 -6.42042 -4.12860 3.01180 3.11469 3.13994 3.63313 3.84406 4.04517 4.24338 4.28343 4.75752 4.91279 4.97285 5.21611 5.29020 5.39078 5.43875 5.66704 5.69055 5.82810 5.92688 5.97775 5.99591 6.11824 6.21795 6.24917 6.38317 6.45491 6.60410 6.69562 6.83128 7.02143 7.19481 7.25236 7.55522 7.60408 7.69875 8.05821 8.23024 8.91076 8.97402 9.31394 9.71514 10.51205 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.022975 B = 0.006209 C = 0.005406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.431391 B = 4508.229728 C = 5178.053675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.289 4.289 2 C -0.086 4.086 3 C 0.237 3.763 4 N -0.437 5.437 5 C -0.342 4.342 6 H 0.099 0.901 7 C 0.040 3.960 8 N -0.862 5.862 9 Si 0.925 3.075 10 H -0.277 1.277 11 H -0.281 1.281 12 H -0.269 1.269 13 C 0.461 3.539 14 O -0.600 6.600 15 C -0.148 4.148 16 C 0.139 3.861 17 N -0.841 5.841 18 C -0.149 4.149 19 C 0.071 3.929 20 O -0.394 6.394 21 C 0.073 3.927 22 C -0.143 4.143 23 H 0.196 0.804 24 H 0.121 0.879 25 H 0.060 0.940 26 H 0.271 0.729 27 H 0.076 0.924 28 H 0.085 0.915 29 H 0.362 0.638 30 H 0.326 0.674 31 H 0.059 0.941 32 H 0.106 0.894 33 H 0.059 0.941 34 H 0.080 0.920 35 H 0.059 0.941 36 H 0.079 0.921 37 H 0.067 0.933 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.414 3.880 6.022 8.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.308 4.308 2 C -0.088 4.088 3 C 0.115 3.885 4 N -0.154 5.154 5 C -0.470 4.470 6 H 0.117 0.883 7 C -0.165 4.165 8 N -0.499 5.499 9 Si 0.751 3.249 10 H -0.202 1.202 11 H -0.207 1.207 12 H -0.194 1.194 13 C 0.251 3.749 14 O -0.487 6.487 15 C -0.190 4.190 16 C 0.045 3.955 17 N -0.377 5.377 18 C -0.186 4.186 19 C -0.005 4.005 20 O -0.313 6.313 21 C -0.004 4.004 22 C -0.182 4.182 23 H 0.213 0.787 24 H 0.138 0.862 25 H 0.078 0.922 26 H 0.082 0.918 27 H 0.095 0.905 28 H 0.104 0.896 29 H 0.182 0.818 30 H 0.137 0.863 31 H 0.078 0.922 32 H 0.124 0.876 33 H 0.077 0.923 34 H 0.098 0.902 35 H 0.077 0.923 36 H 0.098 0.902 37 H 0.086 0.914 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.873 3.879 7.078 8.952 hybrid contribution -0.069 0.291 -2.428 2.446 sum 3.804 4.170 4.650 7.313 Atomic orbital electron populations 1.24185 0.95358 1.03264 1.08036 1.23161 0.94331 0.97281 0.93995 1.18334 0.84187 0.84374 1.01594 1.43730 1.55728 1.11217 1.04756 1.19627 1.26397 1.08075 0.92853 0.88334 1.25381 0.94549 0.97467 0.99148 1.69946 1.32533 1.24852 1.22586 0.85950 0.77895 0.80831 0.80178 1.20240 1.20668 1.19381 1.20172 0.83474 0.88695 0.82607 1.90385 1.58445 1.54889 1.45007 1.22222 1.01890 0.97514 0.97373 1.20440 0.93380 0.90943 0.90705 1.59108 1.04903 1.08136 1.65555 1.22381 0.96063 1.04854 0.95351 1.22487 0.97256 0.85073 0.95715 1.87815 1.31441 1.35187 1.76869 1.22375 0.85039 1.00834 0.92187 1.22238 1.01207 0.97069 0.97667 0.78709 0.86172 0.92211 0.91763 0.90541 0.89638 0.81786 0.86301 0.92242 0.87635 0.92259 0.90229 0.92297 0.90250 0.91445 0.91152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -6.61 19.25 29.55 0.57 -6.04 16 2 C -0.09 -2.11 11.38 -37.12 -0.42 -2.53 16 3 C 0.24 5.65 5.14 -6.83 -0.04 5.62 16 4 N -0.44 -10.45 2.58 -117.93 -0.30 -10.76 16 5 C -0.34 -8.24 9.11 -14.93 -0.14 -8.38 16 6 H 0.10 2.23 6.61 -52.49 -0.35 1.88 16 7 C 0.04 0.96 5.40 -17.47 -0.09 0.87 16 8 N -0.86 -21.65 8.37 55.50 0.46 -21.18 16 9 Si 0.93 18.97 29.56 -169.99 -5.03 13.94 16 10 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 11 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 12 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 13 C 0.46 10.19 7.12 -10.99 -0.08 10.11 16 14 O -0.60 -13.87 11.22 5.54 0.06 -13.80 16 15 C -0.15 -2.73 3.40 -27.88 -0.09 -2.82 16 16 C 0.14 2.26 0.54 -131.42 -0.07 2.19 16 17 N -0.84 -13.18 7.64 0.89 0.01 -13.17 16 18 C -0.15 -2.59 4.74 -26.59 -0.13 -2.71 16 19 C 0.07 1.11 6.68 37.20 0.25 1.36 16 20 O -0.39 -6.26 10.77 -35.23 -0.38 -6.64 16 21 C 0.07 0.98 6.68 37.20 0.25 1.23 16 22 C -0.14 -2.00 5.06 -26.59 -0.13 -2.13 16 23 H 0.20 3.68 7.80 -54.08 -0.42 3.26 16 24 H 0.12 2.94 6.28 -51.93 -0.33 2.61 16 25 H 0.06 1.36 7.50 -51.93 -0.39 0.98 16 26 H 0.27 6.57 8.32 -40.82 -0.34 6.23 16 27 H 0.08 1.33 7.80 -51.93 -0.41 0.92 16 28 H 0.09 1.63 8.05 -51.93 -0.42 1.21 16 29 H 0.36 6.50 6.34 -39.29 -0.25 6.26 16 30 H 0.33 4.58 8.99 -39.29 -0.35 4.22 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.11 2.12 5.62 -51.93 -0.29 1.83 16 33 H 0.06 0.94 7.75 -51.93 -0.40 0.54 16 34 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 35 H 0.06 0.80 7.75 -51.93 -0.40 0.40 16 36 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.07 0.99 8.14 -51.92 -0.42 0.57 16 LS Contribution 305.46 15.07 4.60 4.60 Total: -1.00 -26.87 305.46 -5.95 -32.83 By element: Atomic # 1 Polarization: 22.68 SS G_CDS: -5.25 Total: 17.43 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: -0.13 Total: -3.24 kcal Atomic # 7 Polarization: -45.28 SS G_CDS: 0.17 Total: -45.11 kcal Atomic # 8 Polarization: -20.12 SS G_CDS: -0.32 Total: -20.44 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.03 Total: 13.94 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -26.87 -5.95 -32.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691998129.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.099 kcal (2) G-P(sol) polarization free energy of solvation -26.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds