Wall clock time and date at job start Mon Mar 30 2020 05:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46506 * 109.46904 * 192.99956 * 3 2 1 5 5 C 1.37102 * 119.99925 * 269.99968 * 4 3 2 6 6 H 1.07992 * 119.99943 * 202.51711 * 5 4 3 7 7 C 1.38951 * 119.99879 * 22.52565 * 5 4 3 8 8 N 1.31413 * 120.00054 * 352.40638 * 7 5 4 9 9 Si 1.86792 * 119.99813 * 172.41257 * 7 5 4 10 10 H 1.48502 * 109.47272 * 89.99734 * 9 7 5 11 11 H 1.48505 * 109.47219 * 209.99526 * 9 7 5 12 12 H 1.48501 * 109.47433 * 329.99248 * 9 7 5 13 13 C 1.34771 * 120.00078 * 89.99621 * 4 3 2 14 14 O 1.21299 * 120.00197 * 354.97899 * 13 4 3 15 15 C 1.50697 * 120.00221 * 175.25085 * 13 4 3 16 16 C 1.53002 * 109.47384 * 180.50823 * 15 13 4 17 17 N 1.46891 * 109.54461 * 59.82322 * 16 15 13 18 18 C 1.53180 * 109.54153 * 299.55321 * 16 15 13 19 19 C 1.53090 * 109.15960 * 183.15092 * 18 16 15 20 20 O 1.42907 * 109.41712 * 57.61465 * 19 18 16 21 21 C 1.42898 * 114.09341 * 298.84114 * 20 19 18 22 22 C 1.53088 * 109.41964 * 61.15503 * 21 20 19 23 23 H 4.40643 * 5.51419 * 179.97438 * 4 1 2 24 24 H 1.08994 * 109.47474 * 73.00254 * 3 2 1 25 25 H 1.08998 * 109.47575 * 312.99234 * 3 2 1 26 26 H 0.96999 * 120.00284 * 185.02017 * 8 7 5 27 27 H 1.09000 * 109.47356 * 300.50969 * 15 13 4 28 28 H 1.09006 * 109.47157 * 60.50621 * 15 13 4 29 29 H 1.00903 * 111.00229 * 300.00049 * 17 16 15 30 30 H 1.00906 * 111.00325 * 63.95634 * 17 16 15 31 31 H 1.08992 * 109.52732 * 303.06151 * 18 16 15 32 32 H 1.09000 * 109.51801 * 63.24932 * 18 16 15 33 33 H 1.09004 * 109.48673 * 297.62703 * 19 18 16 34 34 H 1.09003 * 109.48715 * 177.60329 * 19 18 16 35 35 H 1.09003 * 109.48054 * 301.16708 * 21 20 19 36 36 H 1.09002 * 109.48740 * 181.14644 * 21 20 19 37 37 H 1.08994 * 109.52660 * 182.48385 * 22 21 20 38 38 H 1.09007 * 109.52161 * 62.29633 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3468 0.3107 5 6 3.3618 2.2437 -0.7008 6 1 4.0384 3.0711 -0.5465 7 6 2.7221 2.0882 -1.9245 8 7 2.0175 1.0053 -2.1648 9 14 2.8639 3.4185 -3.2281 10 1 4.0417 3.1437 -4.0898 11 1 1.6338 3.4296 -4.0600 12 1 3.0289 4.7400 -2.5710 13 6 3.3580 1.7034 1.5909 14 8 3.0707 0.9434 2.4915 15 6 3.9603 3.0489 1.9038 16 6 4.1203 3.1964 3.4182 17 7 4.9988 2.1339 3.9253 18 6 2.7479 3.0937 4.0909 19 6 2.9080 3.3207 5.5964 20 8 3.5107 4.5965 5.8230 21 6 4.8157 4.7339 5.2572 22 6 4.7324 4.5636 3.7381 23 1 -1.0502 -0.0004 -0.0003 24 1 3.0095 -0.2996 -0.9827 25 1 3.0097 -0.6999 0.7516 26 1 1.6316 0.8627 -3.0431 27 1 4.9365 3.1301 1.4257 28 1 3.3057 3.8360 1.5292 29 1 4.6143 1.2221 3.7285 30 1 5.9299 2.2231 3.5467 31 1 2.0819 3.8507 3.6771 32 1 2.3291 2.1030 3.9144 33 1 3.5416 2.5396 6.0165 34 1 1.9290 3.2911 6.0747 35 1 5.4743 3.9713 5.6730 36 1 5.2112 5.7224 5.4911 37 1 5.7326 4.6242 3.3093 38 1 4.1064 5.3505 3.3172 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691998129.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:25 Heat of formation + Delta-G solvation = -32.723403 kcal Electronic energy + Delta-G solvation = -21232.812511 eV Core-core repulsion = 18076.575406 eV Total energy + Delta-G solvation = -3156.237105 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.31163 -39.83926 -37.38707 -36.08740 -33.71647 -33.36522 -31.91771 -30.68369 -30.21050 -28.03003 -26.35809 -24.50700 -23.90877 -21.12632 -20.25526 -19.43661 -18.39869 -18.01808 -16.85634 -16.79310 -16.63208 -16.29701 -16.21593 -15.87947 -15.61725 -15.33156 -14.59610 -14.37103 -13.85220 -13.68188 -13.58301 -13.16668 -12.99391 -12.91853 -12.83712 -12.55741 -12.53656 -12.16911 -12.08694 -11.46672 -11.39133 -11.15233 -11.07818 -10.55336 -10.53471 -10.14910 -9.81538 -9.39605 -8.22984 -5.99315 1.39730 1.45030 1.54941 1.89105 2.08294 2.29751 2.42755 3.08845 3.10439 3.14405 3.66785 3.85268 3.95924 3.99798 4.08308 4.23529 4.41115 4.47132 4.62641 4.68752 4.77131 4.82073 4.85240 4.91837 4.96712 5.06621 5.14367 5.21342 5.36877 5.39122 5.40902 5.44449 5.81815 6.34295 6.39791 6.41180 6.74569 7.08515 7.13470 7.53257 7.93340 8.69864 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.022975 B = 0.006209 C = 0.005406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.431391 B = 4508.229728 C = 5178.053675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 C -0.128 4.128 3 C 0.240 3.760 4 N -0.453 5.453 5 C -0.356 4.356 6 H 0.111 0.889 7 C -0.004 4.004 8 N -0.887 5.887 9 Si 0.989 3.011 10 H -0.269 1.269 11 H -0.290 1.290 12 H -0.261 1.261 13 C 0.455 3.545 14 O -0.613 6.613 15 C -0.139 4.139 16 C 0.141 3.859 17 N -0.834 5.834 18 C -0.147 4.147 19 C 0.078 3.922 20 O -0.404 6.404 21 C 0.069 3.931 22 C -0.138 4.138 23 H 0.230 0.770 24 H 0.108 0.892 25 H 0.059 0.941 26 H 0.268 0.732 27 H 0.090 0.910 28 H 0.080 0.920 29 H 0.350 0.650 30 H 0.337 0.663 31 H 0.051 0.949 32 H 0.075 0.925 33 H 0.057 0.943 34 H 0.090 0.910 35 H 0.060 0.940 36 H 0.106 0.894 37 H 0.089 0.911 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.176 5.627 6.338 9.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.298 4.298 2 C -0.130 4.130 3 C 0.118 3.882 4 N -0.171 5.171 5 C -0.483 4.483 6 H 0.129 0.871 7 C -0.206 4.206 8 N -0.525 5.525 9 Si 0.813 3.187 10 H -0.194 1.194 11 H -0.216 1.216 12 H -0.185 1.185 13 C 0.246 3.754 14 O -0.501 6.501 15 C -0.181 4.181 16 C 0.047 3.953 17 N -0.369 5.369 18 C -0.185 4.185 19 C 0.002 3.998 20 O -0.324 6.324 21 C -0.007 4.007 22 C -0.176 4.176 23 H 0.247 0.753 24 H 0.126 0.874 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.108 0.892 28 H 0.098 0.902 29 H 0.167 0.833 30 H 0.150 0.850 31 H 0.069 0.931 32 H 0.094 0.906 33 H 0.075 0.925 34 H 0.108 0.892 35 H 0.078 0.922 36 H 0.124 0.876 37 H 0.107 0.893 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.665 5.638 7.416 10.419 hybrid contribution -0.328 -0.306 -2.470 2.511 sum 4.337 5.332 4.945 8.468 Atomic orbital electron populations 1.25076 0.96406 1.01824 1.06500 1.23608 0.95225 0.98724 0.95447 1.18190 0.84341 0.84887 1.00782 1.43944 1.56407 1.11226 1.05490 1.19986 1.26796 1.08410 0.93128 0.87105 1.26176 0.94311 0.99145 1.00990 1.70090 1.33394 1.26244 1.22728 0.84975 0.77473 0.78620 0.77641 1.19449 1.21599 1.18516 1.20859 0.82765 0.89854 0.81904 1.90387 1.58675 1.55726 1.45265 1.22240 1.01947 0.94757 0.99173 1.20464 0.93225 0.92610 0.88982 1.59079 1.05325 1.07171 1.65320 1.22295 0.96567 1.02696 0.96957 1.22399 0.97929 0.85214 0.94304 1.87810 1.32578 1.34894 1.77100 1.22570 0.84080 1.02448 0.91615 1.22217 1.02154 0.95025 0.98227 0.75293 0.87428 0.92329 0.92140 0.89153 0.90170 0.83254 0.85035 0.93051 0.90649 0.92516 0.89188 0.92159 0.87596 0.89260 0.91119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -12.65 19.25 74.32 1.43 -11.22 16 2 C -0.13 -6.39 11.38 31.12 0.35 -6.04 16 3 C 0.24 11.77 5.14 84.57 0.43 12.20 16 4 N -0.45 -21.86 2.58 -645.42 -1.67 -23.53 16 5 C -0.36 -17.05 9.11 84.04 0.77 -16.29 16 6 H 0.11 4.88 6.61 -2.91 -0.02 4.86 16 7 C 0.00 -0.19 5.40 84.93 0.46 0.27 16 8 N -0.89 -44.98 8.37 21.66 0.18 -44.80 16 9 Si 0.99 38.35 29.56 68.60 2.03 40.37 16 10 H -0.27 -10.04 7.11 99.48 0.71 -9.33 16 11 H -0.29 -11.57 7.11 99.48 0.71 -10.86 16 12 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 13 C 0.46 20.19 7.12 87.66 0.62 20.82 16 14 O -0.61 -28.73 11.22 -3.09 -0.03 -28.77 16 15 C -0.14 -4.98 3.40 29.85 0.10 -4.87 16 16 C 0.14 4.38 0.54 3.65 0.00 4.38 16 17 N -0.83 -25.00 7.64 -151.10 -1.15 -26.16 16 18 C -0.15 -5.05 4.74 30.68 0.15 -4.90 16 19 C 0.08 2.35 6.68 72.01 0.48 2.83 16 20 O -0.40 -11.95 10.77 -148.98 -1.60 -13.55 16 21 C 0.07 1.67 6.68 72.01 0.48 2.15 16 22 C -0.14 -3.45 5.06 30.68 0.16 -3.30 16 23 H 0.23 8.23 7.80 -4.41 -0.03 8.20 16 24 H 0.11 5.46 6.28 -2.39 -0.02 5.45 16 25 H 0.06 2.78 7.50 -2.39 -0.02 2.76 16 26 H 0.27 13.13 8.32 -92.71 -0.77 12.36 16 27 H 0.09 2.96 7.80 -2.39 -0.02 2.94 16 28 H 0.08 2.96 8.05 -2.38 -0.02 2.94 16 29 H 0.35 12.42 6.34 -89.69 -0.57 11.85 16 30 H 0.34 8.78 8.99 -89.69 -0.81 7.97 16 31 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.08 3.07 5.62 -2.39 -0.01 3.05 16 33 H 0.06 1.73 7.75 -2.38 -0.02 1.71 16 34 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 35 H 0.06 1.45 7.75 -2.39 -0.02 1.44 16 36 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.09 1.86 8.14 -2.39 -0.02 1.85 16 38 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 Total: -1.00 -57.06 305.46 2.89 -54.17 By element: Atomic # 1 Polarization: 46.52 SS G_CDS: -0.30 Total: 46.23 kcal Atomic # 6 Polarization: -9.40 SS G_CDS: 5.43 Total: -3.97 kcal Atomic # 7 Polarization: -91.84 SS G_CDS: -2.64 Total: -94.48 kcal Atomic # 8 Polarization: -40.68 SS G_CDS: -1.64 Total: -42.32 kcal Atomic # 14 Polarization: 38.35 SS G_CDS: 2.03 Total: 40.37 kcal Total: -57.06 2.89 -54.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691998129.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.448 kcal (2) G-P(sol) polarization free energy of solvation -57.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds