Wall clock time and date at job start Mon Mar 30 2020 04:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99664 * 2 1 4 4 H 1.48510 * 109.46771 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47109 * 299.99269 * 3 2 1 6 6 H 1.48501 * 109.47271 * 59.99885 * 3 2 1 7 7 C 1.37881 * 120.00140 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99854 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99771 * 0.02562 * 7 2 1 10 10 H 1.09002 * 110.64535 * 59.29772 * 9 7 2 11 11 C 1.54599 * 110.72354 * 296.14306 * 9 7 2 12 12 C 1.53997 * 105.13815 * 219.50653 * 11 9 7 13 13 N 1.47896 * 107.05754 * 358.77976 * 12 11 9 14 14 C 1.46897 * 110.99782 * 145.84347 * 13 12 11 15 15 C 1.53000 * 109.47446 * 69.86880 * 14 13 12 16 16 N 1.46498 * 109.47231 * 179.97438 * 15 14 13 17 17 C 1.33875 * 122.76709 * 269.71044 * 16 15 14 18 18 O 1.21230 * 125.39548 * 359.97438 * 17 16 15 19 19 C 1.51310 * 109.21051 * 179.84339 * 17 16 15 20 20 C 1.54227 * 103.55368 * 0.38849 * 19 17 16 21 21 C 1.33882 * 122.75971 * 90.00328 * 16 15 14 22 22 O 1.21220 * 125.39646 * 0.02562 * 21 16 15 23 23 C 1.49005 * 105.87631 * 25.33099 * 13 12 11 24 24 H 0.96994 * 119.99982 * 0.02562 * 1 2 3 25 25 H 1.08999 * 110.30781 * 338.42698 * 11 9 7 26 26 H 1.09002 * 110.30706 * 100.59452 * 11 9 7 27 27 H 1.09008 * 109.91110 * 118.13320 * 12 11 9 28 28 H 1.08999 * 109.91411 * 239.22350 * 12 11 9 29 29 H 1.09006 * 109.47373 * 189.86907 * 14 13 12 30 30 H 1.09002 * 109.47809 * 309.86950 * 14 13 12 31 31 H 1.08997 * 109.47414 * 300.00098 * 15 14 13 32 32 H 1.09006 * 109.46886 * 59.99974 * 15 14 13 33 33 H 1.08997 * 110.79980 * 241.78043 * 19 17 16 34 34 H 1.09002 * 110.41928 * 118.81185 * 19 17 16 35 35 H 1.08999 * 110.60680 * 241.26166 * 20 19 17 36 36 H 1.08998 * 110.60814 * 118.29439 * 20 19 17 37 37 H 1.09000 * 110.86440 * 202.42393 * 23 13 12 38 38 H 1.09003 * 110.68346 * 79.14687 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6082 -2.5718 -0.8767 11 6 0.4253 -2.6541 1.2983 12 6 0.5641 -4.1372 1.6887 13 7 1.3955 -4.7832 0.6500 14 6 2.2367 -5.8386 1.2302 15 6 1.3567 -7.0151 1.6573 16 7 2.1957 -8.0678 2.2353 17 6 2.7288 -9.0535 1.5028 18 8 2.5882 -9.1945 0.3070 19 6 3.5371 -9.9618 2.4034 20 6 3.3689 -9.3291 3.7998 21 6 2.4878 -8.1265 3.5405 22 8 2.1064 -7.3411 4.3814 23 6 2.2308 -3.6978 0.0631 24 1 -0.4850 0.8400 -0.0004 25 1 0.8315 -2.0165 2.0835 26 1 -0.6203 -2.4079 1.1130 27 1 1.0516 -4.2214 2.6600 28 1 -0.4196 -4.6051 1.7253 29 1 2.9596 -6.1764 0.4876 30 1 2.7649 -5.4459 2.0990 31 1 0.6338 -6.6774 2.3999 32 1 0.8285 -7.4080 0.7884 33 1 4.5863 -9.9658 2.1079 34 1 3.1296 -10.9726 2.3886 35 1 4.3344 -9.0183 4.1990 36 1 2.8776 -10.0251 4.4797 37 1 2.5724 -3.9681 -0.9361 38 1 3.0768 -3.4698 0.7115 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692349006.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:20 Heat of formation + Delta-G solvation = -62.435761 kcal Electronic energy + Delta-G solvation = -20240.448912 eV Core-core repulsion = 17082.923382 eV Total energy + Delta-G solvation = -3157.525530 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.03531 -38.73231 -38.10378 -36.04002 -34.39460 -32.88425 -30.85037 -28.20205 -27.68236 -26.45376 -24.36806 -22.84258 -22.57904 -20.05805 -19.82423 -19.18022 -17.47537 -17.09645 -16.62948 -16.30286 -15.28820 -14.98483 -14.66899 -14.42463 -14.27897 -14.17755 -14.01519 -13.57436 -13.25086 -12.98744 -12.49311 -12.12630 -11.75842 -11.68556 -11.35431 -11.07571 -10.88984 -10.83574 -10.66899 -10.45198 -10.25754 -10.20042 -9.85165 -9.65761 -9.20089 -8.76450 -8.39312 -7.83931 -6.01598 -4.04945 1.29119 2.32321 2.50311 3.29837 3.37885 3.41556 3.77895 3.91291 4.09532 4.41236 4.46785 4.63038 4.97111 5.06630 5.15950 5.20130 5.23383 5.32098 5.36214 5.53941 5.74375 5.80006 6.03016 6.11550 6.24479 6.40729 6.53216 6.67419 6.83199 7.10792 7.11230 7.16897 7.52510 7.56222 7.65260 7.68051 7.87200 8.03747 8.44359 8.97787 9.59310 11.08379 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.037764 B = 0.003795 C = 0.003721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.261474 B = 7377.303681 C = 7523.487786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.064 3.936 3 Si 0.890 3.110 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.516 4.516 8 H 0.056 0.944 9 C 0.052 3.948 10 H 0.039 0.961 11 C -0.103 4.103 12 C 0.030 3.970 13 N -0.518 5.518 14 C 0.038 3.962 15 C 0.103 3.897 16 N -0.573 5.573 17 C 0.523 3.477 18 O -0.477 6.477 19 C -0.157 4.157 20 C -0.157 4.157 21 C 0.522 3.478 22 O -0.478 6.478 23 C 0.043 3.957 24 H 0.260 0.740 25 H 0.054 0.946 26 H 0.061 0.939 27 H 0.031 0.969 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.035 0.965 31 H 0.093 0.907 32 H 0.101 0.899 33 H 0.120 0.880 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.065 0.935 38 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.040 -20.113 7.358 22.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.138 4.138 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.555 4.555 8 H 0.074 0.926 9 C 0.033 3.967 10 H 0.057 0.943 11 C -0.142 4.142 12 C -0.097 4.097 13 N -0.243 5.243 14 C -0.092 4.092 15 C -0.018 4.018 16 N -0.316 5.316 17 C 0.312 3.688 18 O -0.348 6.348 19 C -0.197 4.197 20 C -0.197 4.197 21 C 0.311 3.689 22 O -0.349 6.349 23 C -0.084 4.084 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.080 0.920 27 H 0.049 0.951 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.053 0.947 31 H 0.111 0.889 32 H 0.120 0.880 33 H 0.139 0.861 34 H 0.137 0.863 35 H 0.138 0.862 36 H 0.138 0.862 37 H 0.084 0.916 38 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 5.253 -19.872 6.758 21.637 hybrid contribution 0.918 1.347 0.703 1.775 sum 6.172 -18.525 7.461 20.903 Atomic orbital electron populations 1.69984 1.05876 1.26413 1.50223 1.24971 0.94839 0.99032 0.95007 0.86566 0.80139 0.83896 0.77571 1.19819 1.20980 1.21069 1.21125 0.92811 0.90371 1.51197 0.92590 1.19541 0.92245 0.90774 0.94112 0.94289 1.22339 1.01503 0.90392 0.99924 1.23039 0.96767 0.97552 0.92374 1.64794 1.20466 1.10587 1.28413 1.22431 0.95443 0.92989 0.98371 1.21814 0.93003 0.86807 1.00190 1.46807 1.47131 1.26937 1.10724 1.20834 0.78892 0.81221 0.87847 1.90806 1.58304 1.72401 1.13325 1.22477 1.03218 1.00706 0.93270 1.22477 1.02304 0.96295 0.98598 1.20860 0.80014 0.86628 0.81405 1.90807 1.52350 1.43722 1.48028 1.23465 0.95866 0.91376 0.97664 0.93069 0.92733 0.92027 0.95101 0.91948 0.90984 0.94702 0.88886 0.88033 0.86149 0.86258 0.86193 0.86233 0.91614 0.94673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.68 12.61 55.43 0.70 -24.99 16 2 C 0.06 1.78 5.35 -17.82 -0.10 1.68 16 3 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.52 -14.31 8.40 -34.44 -0.29 -14.60 16 8 H 0.06 1.53 7.78 -52.49 -0.41 1.12 16 9 C 0.05 1.34 2.93 -89.91 -0.26 1.07 16 10 H 0.04 1.09 8.14 -51.93 -0.42 0.66 16 11 C -0.10 -2.46 5.65 -25.37 -0.14 -2.60 16 12 C 0.03 0.61 5.79 -2.76 -0.02 0.59 16 13 N -0.52 -10.13 5.27 -230.04 -1.21 -11.34 16 14 C 0.04 0.62 5.09 -3.83 -0.02 0.60 16 15 C 0.10 1.45 5.61 -4.04 -0.02 1.42 16 16 N -0.57 -6.64 2.55 -115.34 -0.29 -6.93 16 17 C 0.52 5.46 8.07 -11.09 -0.09 5.37 16 18 O -0.48 -6.78 17.47 5.60 0.10 -6.68 16 19 C -0.16 -0.78 7.03 -26.94 -0.19 -0.97 16 20 C -0.16 -0.80 7.03 -26.94 -0.19 -0.99 16 21 C 0.52 5.59 8.08 -11.08 -0.09 5.50 16 22 O -0.48 -7.02 17.48 5.61 0.10 -6.92 16 23 C 0.04 0.94 5.98 -1.63 -0.01 0.93 16 24 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 25 H 0.05 1.38 7.84 -51.93 -0.41 0.97 16 26 H 0.06 1.54 8.11 -51.93 -0.42 1.12 16 27 H 0.03 0.60 7.57 -51.92 -0.39 0.21 16 28 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.07 1.17 8.11 -51.93 -0.42 0.75 16 30 H 0.03 0.60 7.82 -51.93 -0.41 0.19 16 31 H 0.09 1.35 7.20 -51.93 -0.37 0.97 16 32 H 0.10 1.45 7.82 -51.93 -0.41 1.05 16 33 H 0.12 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.12 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.12 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.12 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 38 H 0.03 0.77 7.93 -51.93 -0.41 0.36 16 LS Contribution 316.73 15.07 4.77 4.77 Total: -1.00 -32.79 316.73 -8.02 -40.81 By element: Atomic # 1 Polarization: 2.63 SS G_CDS: -5.74 Total: -3.12 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: -1.42 Total: -1.99 kcal Atomic # 7 Polarization: -42.45 SS G_CDS: -0.81 Total: -43.26 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: 0.20 Total: -13.60 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.79 -8.02 -40.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692349006.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.629 kcal (2) G-P(sol) polarization free energy of solvation -32.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds