Wall clock time and date at job start Mon Mar 30 2020 04:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99664 * 2 1 4 4 H 1.48510 * 109.46771 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47109 * 299.99269 * 3 2 1 6 6 H 1.48501 * 109.47271 * 59.99885 * 3 2 1 7 7 C 1.37881 * 120.00140 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99854 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99771 * 0.02562 * 7 2 1 10 10 H 1.09002 * 110.64535 * 59.29772 * 9 7 2 11 11 C 1.54599 * 110.72354 * 296.14306 * 9 7 2 12 12 C 1.53997 * 105.13815 * 219.50653 * 11 9 7 13 13 N 1.47896 * 107.05754 * 358.77976 * 12 11 9 14 14 C 1.46897 * 110.99782 * 145.84347 * 13 12 11 15 15 C 1.53000 * 109.47446 * 69.86880 * 14 13 12 16 16 N 1.46498 * 109.47231 * 179.97438 * 15 14 13 17 17 C 1.33875 * 122.76709 * 269.71044 * 16 15 14 18 18 O 1.21230 * 125.39548 * 359.97438 * 17 16 15 19 19 C 1.51310 * 109.21051 * 179.84339 * 17 16 15 20 20 C 1.54227 * 103.55368 * 0.38849 * 19 17 16 21 21 C 1.33882 * 122.75971 * 90.00328 * 16 15 14 22 22 O 1.21220 * 125.39646 * 0.02562 * 21 16 15 23 23 C 1.49005 * 105.87631 * 25.33099 * 13 12 11 24 24 H 0.96994 * 119.99982 * 0.02562 * 1 2 3 25 25 H 1.08999 * 110.30781 * 338.42698 * 11 9 7 26 26 H 1.09002 * 110.30706 * 100.59452 * 11 9 7 27 27 H 1.09008 * 109.91110 * 118.13320 * 12 11 9 28 28 H 1.08999 * 109.91411 * 239.22350 * 12 11 9 29 29 H 1.09006 * 109.47373 * 189.86907 * 14 13 12 30 30 H 1.09002 * 109.47809 * 309.86950 * 14 13 12 31 31 H 1.08997 * 109.47414 * 300.00098 * 15 14 13 32 32 H 1.09006 * 109.46886 * 59.99974 * 15 14 13 33 33 H 1.08997 * 110.79980 * 241.78043 * 19 17 16 34 34 H 1.09002 * 110.41928 * 118.81185 * 19 17 16 35 35 H 1.08999 * 110.60680 * 241.26166 * 20 19 17 36 36 H 1.08998 * 110.60814 * 118.29439 * 20 19 17 37 37 H 1.09000 * 110.86440 * 202.42393 * 23 13 12 38 38 H 1.09003 * 110.68346 * 79.14687 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6082 -2.5718 -0.8767 11 6 0.4253 -2.6541 1.2983 12 6 0.5641 -4.1372 1.6887 13 7 1.3955 -4.7832 0.6500 14 6 2.2367 -5.8386 1.2302 15 6 1.3567 -7.0151 1.6573 16 7 2.1957 -8.0678 2.2353 17 6 2.7288 -9.0535 1.5028 18 8 2.5882 -9.1945 0.3070 19 6 3.5371 -9.9618 2.4034 20 6 3.3689 -9.3291 3.7998 21 6 2.4878 -8.1265 3.5405 22 8 2.1064 -7.3411 4.3814 23 6 2.2308 -3.6978 0.0631 24 1 -0.4850 0.8400 -0.0004 25 1 0.8315 -2.0165 2.0835 26 1 -0.6203 -2.4079 1.1130 27 1 1.0516 -4.2214 2.6600 28 1 -0.4196 -4.6051 1.7253 29 1 2.9596 -6.1764 0.4876 30 1 2.7649 -5.4459 2.0990 31 1 0.6338 -6.6774 2.3999 32 1 0.8285 -7.4080 0.7884 33 1 4.5863 -9.9658 2.1079 34 1 3.1296 -10.9726 2.3886 35 1 4.3344 -9.0183 4.1990 36 1 2.8776 -10.0251 4.4797 37 1 2.5724 -3.9681 -0.9361 38 1 3.0768 -3.4698 0.7115 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692349006.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:19 Heat of formation + Delta-G solvation = -85.752129 kcal Electronic energy + Delta-G solvation = -20241.459986 eV Core-core repulsion = 17082.923382 eV Total energy + Delta-G solvation = -3158.536603 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.85518 -39.80514 -39.64386 -36.99887 -35.71335 -34.44678 -32.40835 -30.05444 -29.09532 -27.08664 -26.29859 -24.26937 -23.27816 -21.75930 -21.45527 -20.34312 -18.53919 -18.29451 -17.82637 -17.48271 -16.84941 -16.66119 -16.14983 -15.53647 -15.29792 -15.16499 -15.02012 -14.86846 -14.53474 -14.18576 -13.94601 -13.46929 -13.35936 -13.05975 -12.93395 -12.69109 -12.51091 -12.20386 -12.08940 -12.00535 -11.66355 -11.63617 -11.24533 -11.07354 -10.87334 -10.83236 -10.54071 -9.46860 -8.16555 -6.27450 0.50149 1.39106 1.40388 1.47762 1.52324 1.72296 2.40477 3.05615 3.15433 3.23458 3.30657 3.66071 3.72485 3.87356 4.01845 4.20932 4.25868 4.26841 4.30917 4.45868 4.52257 4.60653 4.77980 4.78454 4.79993 4.93254 4.95038 4.96397 5.18102 5.22333 5.56310 5.69772 5.77385 5.84519 5.93999 6.07993 6.33482 6.34129 6.74031 6.82201 7.40600 8.93421 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.037764 B = 0.003795 C = 0.003721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.261474 B = 7377.303681 C = 7523.487786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.013 3.987 3 Si 0.958 3.042 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.536 4.536 8 H 0.055 0.945 9 C 0.043 3.957 10 H 0.006 0.994 11 C -0.094 4.094 12 C 0.044 3.956 13 N -0.521 5.521 14 C 0.046 3.954 15 C 0.108 3.892 16 N -0.580 5.580 17 C 0.517 3.483 18 O -0.523 6.523 19 C -0.138 4.138 20 C -0.139 4.139 21 C 0.515 3.485 22 O -0.526 6.526 23 C 0.055 3.945 24 H 0.262 0.738 25 H 0.034 0.966 26 H 0.041 0.959 27 H 0.038 0.962 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.029 0.971 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.147 0.853 34 H 0.150 0.850 35 H 0.145 0.855 36 H 0.150 0.850 37 H 0.072 0.928 38 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.880 -22.101 8.495 24.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.186 4.186 3 Si 0.783 3.217 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.206 1.206 7 C -0.574 4.574 8 H 0.073 0.927 9 C 0.024 3.976 10 H 0.025 0.975 11 C -0.133 4.133 12 C -0.084 4.084 13 N -0.245 5.245 14 C -0.084 4.084 15 C -0.014 4.014 16 N -0.323 5.323 17 C 0.309 3.691 18 O -0.397 6.397 19 C -0.177 4.177 20 C -0.177 4.177 21 C 0.307 3.693 22 O -0.401 6.401 23 C -0.072 4.072 24 H 0.071 0.929 25 H 0.053 0.947 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.098 0.902 29 H 0.093 0.907 30 H 0.047 0.953 31 H 0.105 0.895 32 H 0.114 0.886 33 H 0.164 0.836 34 H 0.168 0.832 35 H 0.163 0.837 36 H 0.168 0.832 37 H 0.091 0.909 38 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 7.116 -21.899 7.906 24.345 hybrid contribution 0.321 1.940 0.327 1.994 sum 7.437 -19.958 8.233 22.835 Atomic orbital electron populations 1.70106 1.07324 1.27349 1.50872 1.25785 0.95693 1.02559 0.94546 0.85508 0.79062 0.79433 0.77667 1.19021 1.20445 1.20595 1.21450 0.92992 0.91653 1.51317 0.92659 1.19493 0.92809 0.91923 0.93393 0.97536 1.22126 0.99715 0.92850 0.98623 1.22892 0.98007 0.94898 0.92627 1.64770 1.20681 1.10349 1.28719 1.22396 0.95408 0.92666 0.97930 1.21503 0.92947 0.86961 0.99979 1.47037 1.46982 1.26602 1.11649 1.21881 0.78326 0.81150 0.87759 1.90787 1.59958 1.73414 1.15501 1.22610 1.03577 1.00420 0.91080 1.22611 1.02146 0.93678 0.99307 1.21933 0.79638 0.87517 0.80230 1.90785 1.54353 1.45921 1.48996 1.23236 0.95007 0.90670 0.98326 0.92940 0.94692 0.94009 0.94369 0.90177 0.90697 0.95265 0.89529 0.88565 0.83561 0.83203 0.83724 0.83230 0.90933 0.94785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.44 12.61 21.45 0.27 -54.17 16 2 C 0.01 0.76 5.35 84.66 0.45 1.21 16 3 Si 0.96 44.30 29.54 68.60 2.03 46.32 16 4 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 5 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 6 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 7 C -0.54 -30.32 8.40 25.60 0.22 -30.10 16 8 H 0.06 3.06 7.78 -2.91 -0.02 3.04 16 9 C 0.04 2.27 2.93 -10.33 -0.03 2.24 16 10 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 11 C -0.09 -4.67 5.65 31.48 0.18 -4.49 16 12 C 0.04 1.75 5.79 86.45 0.50 2.25 16 13 N -0.52 -20.44 5.27 -881.70 -4.65 -25.09 16 14 C 0.05 1.48 5.09 86.30 0.44 1.92 16 15 C 0.11 3.03 5.61 86.38 0.48 3.51 16 16 N -0.58 -12.67 2.55 -756.66 -1.93 -14.60 16 17 C 0.52 9.71 8.07 87.99 0.71 10.42 16 18 O -0.52 -14.35 17.47 -2.87 -0.05 -14.40 16 19 C -0.14 -0.72 7.03 30.46 0.21 -0.51 16 20 C -0.14 -0.77 7.03 30.46 0.21 -0.56 16 21 C 0.51 9.99 8.08 87.99 0.71 10.70 16 22 O -0.53 -15.04 17.48 -2.84 -0.05 -15.09 16 23 C 0.05 2.42 5.98 86.56 0.52 2.93 16 24 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 25 H 0.03 1.82 7.84 -2.39 -0.02 1.80 16 26 H 0.04 2.18 8.11 -2.39 -0.02 2.16 16 27 H 0.04 1.48 7.57 -2.38 -0.02 1.47 16 28 H 0.08 2.95 8.14 -2.39 -0.02 2.93 16 29 H 0.07 2.40 8.11 -2.38 -0.02 2.38 16 30 H 0.03 0.99 7.82 -2.39 -0.02 0.97 16 31 H 0.09 2.51 7.20 -2.39 -0.02 2.49 16 32 H 0.10 2.77 7.82 -2.38 -0.02 2.75 16 33 H 0.15 0.17 8.14 -2.39 -0.02 0.15 16 34 H 0.15 0.02 8.14 -2.39 -0.02 0.00 16 35 H 0.14 0.25 8.14 -2.39 -0.02 0.23 16 36 H 0.15 0.08 8.14 -2.39 -0.02 0.06 16 37 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 38 H 0.03 1.50 7.93 -2.39 -0.02 1.48 16 Total: -1.00 -74.60 316.73 1.27 -73.34 By element: Atomic # 1 Polarization: 3.14 SS G_CDS: 1.04 Total: 4.18 kcal Atomic # 6 Polarization: -5.08 SS G_CDS: 4.61 Total: -0.47 kcal Atomic # 7 Polarization: -87.56 SS G_CDS: -6.31 Total: -93.87 kcal Atomic # 8 Polarization: -29.40 SS G_CDS: -0.10 Total: -29.50 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.32 kcal Total: -74.60 1.27 -73.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692349006.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.414 kcal (2) G-P(sol) polarization free energy of solvation -74.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds