Wall clock time and date at job start Mon Mar 30 2020 04:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31023 * 1 3 3 Si 1.86796 * 120.00142 * 2 1 4 4 H 1.48501 * 109.46920 * 270.00254 * 3 2 1 5 5 H 1.48501 * 109.47095 * 150.00236 * 3 2 1 6 6 H 1.48503 * 109.46941 * 30.00096 * 3 2 1 7 7 C 1.39584 * 119.99660 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00055 * 0.02562 * 7 2 1 9 9 N 1.36115 * 119.99841 * 179.97438 * 7 2 1 10 10 C 1.34783 * 120.00318 * 180.02562 * 9 7 2 11 11 O 1.21504 * 119.99419 * 0.02562 * 10 9 7 12 12 C 1.48826 * 120.00194 * 180.02562 * 10 9 7 13 13 O 1.21440 * 120.00251 * 0.02562 * 12 10 9 14 14 N 1.34774 * 119.99942 * 180.02562 * 12 10 9 15 15 C 1.46499 * 120.00239 * 179.97438 * 14 12 10 16 16 H 1.08998 * 112.87724 * 316.08745 * 15 14 12 17 17 C 1.53921 * 113.65209 * 184.77704 * 15 14 12 18 18 C 1.54106 * 87.15674 * 220.67726 * 17 15 14 19 19 C 1.53018 * 113.65137 * 87.39743 * 15 14 12 20 20 C 1.53567 * 115.12919 * 22.65578 * 19 15 14 21 21 C 1.55055 * 103.98501 * 206.87008 * 20 19 15 22 22 C 1.54957 * 102.85983 * 37.29730 * 21 20 19 23 23 C 1.53171 * 115.37149 * 256.65090 * 19 15 14 24 24 H 0.96996 * 119.99753 * 359.97438 * 1 2 3 25 25 H 0.97000 * 120.00112 * 0.02562 * 9 7 2 26 26 H 0.97005 * 120.00116 * 359.97438 * 14 12 10 27 27 H 1.08995 * 113.59581 * 335.23201 * 17 15 14 28 28 H 1.09006 * 113.58790 * 106.06029 * 17 15 14 29 29 H 1.09006 * 113.57010 * 270.30003 * 18 17 15 30 30 H 1.08994 * 113.79382 * 139.31044 * 18 17 15 31 31 H 1.08993 * 110.52412 * 325.49585 * 20 19 15 32 32 H 1.08997 * 110.51884 * 88.24635 * 20 19 15 33 33 H 1.08998 * 110.74043 * 278.96102 * 21 20 19 34 34 H 1.08998 * 110.89223 * 155.71159 * 21 20 19 35 35 H 1.08999 * 110.48390 * 203.75851 * 22 21 20 36 36 H 1.09010 * 110.47696 * 81.13925 * 22 21 20 37 37 H 1.09002 * 110.09110 * 248.85531 * 23 19 15 38 38 H 1.09003 * 110.09739 * 10.44544 * 23 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2443 1.6177 0.0000 4 1 2.4917 2.0463 -1.4001 5 1 3.5418 1.4401 0.7000 6 1 1.4417 2.6526 0.7001 7 6 2.0081 -1.2089 0.0005 8 1 1.4680 -2.1442 0.0005 9 7 3.3692 -1.2089 0.0000 10 6 4.0432 -2.3762 0.0000 11 8 3.4356 -3.4284 0.0000 12 6 5.5314 -2.3762 0.0000 13 8 6.1387 -1.3245 0.0005 14 7 6.2053 -3.5434 -0.0005 15 6 7.6703 -3.5435 -0.0011 16 1 8.0938 -2.8199 -0.6976 17 6 8.2876 -4.9485 -0.1190 18 6 9.3266 -4.4959 0.9252 19 6 8.2847 -3.4802 1.3989 20 6 7.3714 -3.9649 2.5344 21 6 7.8784 -3.1914 3.7790 22 6 8.2385 -1.8008 3.1979 23 6 8.8409 -2.1136 1.8104 24 1 -0.4849 0.8400 0.0004 25 1 3.8543 -0.3689 -0.0004 26 1 5.7203 -4.3835 -0.0005 27 1 7.6320 -5.7442 0.2344 28 1 8.7154 -5.1560 -1.1000 29 1 10.2145 -4.0396 0.4873 30 1 9.5641 -5.2574 1.6680 31 1 6.3325 -3.7113 2.3239 32 1 7.4816 -5.0393 2.6811 33 1 8.7604 -3.6737 4.2003 34 1 7.0925 -3.1044 4.5292 35 1 8.9739 -1.3023 3.8294 36 1 7.3436 -1.1869 3.0955 37 1 9.9282 -2.1560 1.8752 38 1 8.5376 -1.3535 1.0904 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693784110.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:24:54 Heat of formation + Delta-G solvation = -61.158107 kcal Electronic energy + Delta-G solvation = -20835.592380 eV Core-core repulsion = 17678.122253 eV Total energy + Delta-G solvation = -3157.470127 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.76381 -39.05347 -37.13864 -35.28444 -34.36488 -32.78765 -31.82176 -28.71740 -26.85572 -26.45658 -24.93681 -22.32175 -21.85216 -20.53602 -19.42999 -18.99478 -18.28316 -16.83961 -16.28331 -15.60205 -15.54562 -15.25550 -14.77491 -14.50197 -13.66771 -13.45386 -13.28585 -13.07864 -12.90641 -12.60098 -12.50462 -12.38046 -11.85003 -11.44745 -11.28425 -11.01305 -10.97102 -10.71248 -10.56422 -10.52040 -10.48346 -10.45915 -10.11546 -10.08003 -9.76364 -8.70640 -8.40856 -8.38414 -6.58072 -3.99616 2.32676 3.04526 3.07675 3.10625 3.35338 3.96111 4.14269 4.37873 4.47990 4.51690 4.63255 4.83891 4.93494 5.09190 5.13916 5.25376 5.46617 5.54349 5.61397 5.63159 5.69583 5.72697 5.77362 5.79595 5.88695 5.98368 6.14971 6.17766 6.22384 6.35331 6.44391 6.46764 6.78239 7.27339 7.70684 7.93523 8.27275 8.54383 8.76564 9.20476 9.62808 10.52163 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.026471 B = 0.005346 C = 0.004977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.526447 B = 5236.643043 C = 5624.509557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.053 3.947 3 Si 0.875 3.125 4 H -0.264 1.264 5 H -0.260 1.260 6 H -0.271 1.271 7 C -0.309 4.309 8 H 0.127 0.873 9 N -0.528 5.528 10 C 0.403 3.597 11 O -0.580 6.580 12 C 0.515 3.485 13 O -0.546 6.546 14 N -0.700 5.700 15 C 0.135 3.865 16 H 0.104 0.896 17 C -0.143 4.143 18 C -0.126 4.126 19 C -0.092 4.092 20 C -0.101 4.101 21 C -0.122 4.122 22 C -0.124 4.124 23 C -0.110 4.110 24 H 0.281 0.719 25 H 0.383 0.617 26 H 0.410 0.590 27 H 0.087 0.913 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.066 0.934 37 H 0.059 0.941 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.064 -5.523 3.368 19.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C -0.155 4.155 3 Si 0.700 3.300 4 H -0.189 1.189 5 H -0.184 1.184 6 H -0.196 1.196 7 C -0.438 4.438 8 H 0.145 0.855 9 N -0.165 5.165 10 C 0.188 3.812 11 O -0.466 6.466 12 C 0.299 3.701 13 O -0.423 6.423 14 N -0.353 5.353 15 C 0.029 3.971 16 H 0.121 0.879 17 C -0.181 4.181 18 C -0.164 4.164 19 C -0.094 4.094 20 C -0.139 4.139 21 C -0.160 4.160 22 C -0.161 4.161 23 C -0.147 4.147 24 H 0.092 0.908 25 H 0.218 0.782 26 H 0.247 0.753 27 H 0.106 0.894 28 H 0.093 0.907 29 H 0.101 0.899 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 17.885 -5.327 3.353 18.960 hybrid contribution 0.284 0.959 -0.026 1.001 sum 18.169 -4.368 3.327 18.980 Atomic orbital electron populations 1.69446 1.06101 1.28594 1.44626 1.25225 0.95534 0.98543 0.96245 0.86687 0.80439 0.83112 0.79776 1.18926 1.18441 1.19551 1.19554 0.79181 0.97041 1.48049 0.85548 1.41829 1.07546 1.06954 1.60158 1.18928 0.86617 0.85243 0.90399 1.90620 1.68875 1.30381 1.56740 1.20585 0.89638 0.83769 0.76081 1.90659 1.70820 1.31299 1.49555 1.45642 1.06005 1.09234 1.74391 1.22516 0.79783 0.97799 0.96953 0.87857 1.23288 0.98406 0.96393 1.00015 1.22822 0.96493 0.98629 0.98450 1.22435 0.96075 0.95618 0.95231 1.22076 0.99642 0.99059 0.93089 1.22491 1.00334 0.95922 0.97247 1.22360 1.00687 0.97025 0.96038 1.22037 0.99056 0.96278 0.97352 0.90815 0.78187 0.75340 0.89402 0.90724 0.89928 0.90880 0.90578 0.91796 0.91951 0.91807 0.92243 0.91491 0.92192 0.90627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.76 13.94 55.53 0.77 -22.99 16 2 C 0.05 1.41 5.51 -17.39 -0.10 1.32 16 3 Si 0.88 19.47 27.74 -169.99 -4.72 14.76 16 4 H -0.26 -5.77 7.11 56.52 0.40 -5.36 16 5 H -0.26 -5.61 6.53 56.52 0.37 -5.24 16 6 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 7 C -0.31 -8.65 10.16 -15.15 -0.15 -8.81 16 8 H 0.13 3.95 7.37 -52.48 -0.39 3.56 16 9 N -0.53 -13.37 5.06 -11.59 -0.06 -13.43 16 10 C 0.40 9.76 7.82 -11.87 -0.09 9.67 16 11 O -0.58 -15.29 16.03 5.36 0.09 -15.20 16 12 C 0.52 10.45 7.72 -11.88 -0.09 10.36 16 13 O -0.55 -11.67 16.02 5.42 0.09 -11.58 16 14 N -0.70 -11.21 3.97 -53.96 -0.21 -11.42 16 15 C 0.13 1.75 3.37 -67.44 -0.23 1.52 16 16 H 0.10 1.42 7.96 -51.93 -0.41 1.01 16 17 C -0.14 -1.38 7.63 -25.68 -0.20 -1.57 16 18 C -0.13 -1.15 7.14 -26.14 -0.19 -1.34 16 19 C -0.09 -1.09 1.11 -154.10 -0.17 -1.26 16 20 C -0.10 -1.26 5.81 -25.35 -0.15 -1.41 16 21 C -0.12 -1.42 6.91 -24.61 -0.17 -1.59 16 22 C -0.12 -1.55 6.84 -24.93 -0.17 -1.72 16 23 C -0.11 -1.36 6.33 -25.88 -0.16 -1.53 16 24 H 0.28 7.17 8.30 -40.82 -0.34 6.83 16 25 H 0.38 9.15 5.22 -40.82 -0.21 8.93 16 26 H 0.41 6.28 8.08 -40.82 -0.33 5.95 16 27 H 0.09 0.81 8.10 -51.93 -0.42 0.39 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.08 0.68 8.11 -51.93 -0.42 0.26 16 30 H 0.07 0.61 8.03 -51.93 -0.42 0.19 16 31 H 0.08 1.16 6.85 -51.93 -0.36 0.80 16 32 H 0.06 0.70 7.88 -51.93 -0.41 0.29 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.99 8.14 -51.92 -0.42 0.56 16 37 H 0.06 0.63 7.91 -51.93 -0.41 0.22 16 38 H 0.08 1.10 7.54 -51.93 -0.39 0.71 16 LS Contribution 311.91 15.07 4.70 4.70 Total: -1.00 -30.26 311.91 -6.66 -36.92 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: -5.45 Total: 14.62 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: -1.87 Total: 3.63 kcal Atomic # 7 Polarization: -48.34 SS G_CDS: 0.50 Total: -47.84 kcal Atomic # 8 Polarization: -26.96 SS G_CDS: 0.17 Total: -26.79 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -4.72 Total: 14.76 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.26 -6.66 -36.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693784110.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.236 kcal (2) G-P(sol) polarization free energy of solvation -30.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds