Wall clock time and date at job start Mon Mar 30 2020 04:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31023 * 1 3 3 Si 1.86796 * 120.00142 * 2 1 4 4 H 1.48501 * 109.46920 * 270.00254 * 3 2 1 5 5 H 1.48501 * 109.47095 * 150.00236 * 3 2 1 6 6 H 1.48503 * 109.46941 * 30.00096 * 3 2 1 7 7 C 1.39584 * 119.99660 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00055 * 0.02562 * 7 2 1 9 9 N 1.36115 * 119.99841 * 179.97438 * 7 2 1 10 10 C 1.34783 * 120.00318 * 180.02562 * 9 7 2 11 11 O 1.21504 * 119.99419 * 0.02562 * 10 9 7 12 12 C 1.48826 * 120.00194 * 180.02562 * 10 9 7 13 13 O 1.21440 * 120.00251 * 0.02562 * 12 10 9 14 14 N 1.34774 * 119.99942 * 180.02562 * 12 10 9 15 15 C 1.46499 * 120.00239 * 179.97438 * 14 12 10 16 16 H 1.08998 * 112.87724 * 316.08745 * 15 14 12 17 17 C 1.53921 * 113.65209 * 184.77704 * 15 14 12 18 18 C 1.54106 * 87.15674 * 220.67726 * 17 15 14 19 19 C 1.53018 * 113.65137 * 87.39743 * 15 14 12 20 20 C 1.53567 * 115.12919 * 22.65578 * 19 15 14 21 21 C 1.55055 * 103.98501 * 206.87008 * 20 19 15 22 22 C 1.54957 * 102.85983 * 37.29730 * 21 20 19 23 23 C 1.53171 * 115.37149 * 256.65090 * 19 15 14 24 24 H 0.96996 * 119.99753 * 359.97438 * 1 2 3 25 25 H 0.97000 * 120.00112 * 0.02562 * 9 7 2 26 26 H 0.97005 * 120.00116 * 359.97438 * 14 12 10 27 27 H 1.08995 * 113.59581 * 335.23201 * 17 15 14 28 28 H 1.09006 * 113.58790 * 106.06029 * 17 15 14 29 29 H 1.09006 * 113.57010 * 270.30003 * 18 17 15 30 30 H 1.08994 * 113.79382 * 139.31044 * 18 17 15 31 31 H 1.08993 * 110.52412 * 325.49585 * 20 19 15 32 32 H 1.08997 * 110.51884 * 88.24635 * 20 19 15 33 33 H 1.08998 * 110.74043 * 278.96102 * 21 20 19 34 34 H 1.08998 * 110.89223 * 155.71159 * 21 20 19 35 35 H 1.08999 * 110.48390 * 203.75851 * 22 21 20 36 36 H 1.09010 * 110.47696 * 81.13925 * 22 21 20 37 37 H 1.09002 * 110.09110 * 248.85531 * 23 19 15 38 38 H 1.09003 * 110.09739 * 10.44544 * 23 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2443 1.6177 0.0000 4 1 2.4917 2.0463 -1.4001 5 1 3.5418 1.4401 0.7000 6 1 1.4417 2.6526 0.7001 7 6 2.0081 -1.2089 0.0005 8 1 1.4680 -2.1442 0.0005 9 7 3.3692 -1.2089 0.0000 10 6 4.0432 -2.3762 0.0000 11 8 3.4356 -3.4284 0.0000 12 6 5.5314 -2.3762 0.0000 13 8 6.1387 -1.3245 0.0005 14 7 6.2053 -3.5434 -0.0005 15 6 7.6703 -3.5435 -0.0011 16 1 8.0938 -2.8199 -0.6976 17 6 8.2876 -4.9485 -0.1190 18 6 9.3266 -4.4959 0.9252 19 6 8.2847 -3.4802 1.3989 20 6 7.3714 -3.9649 2.5344 21 6 7.8784 -3.1914 3.7790 22 6 8.2385 -1.8008 3.1979 23 6 8.8409 -2.1136 1.8104 24 1 -0.4849 0.8400 0.0004 25 1 3.8543 -0.3689 -0.0004 26 1 5.7203 -4.3835 -0.0005 27 1 7.6320 -5.7442 0.2344 28 1 8.7154 -5.1560 -1.1000 29 1 10.2145 -4.0396 0.4873 30 1 9.5641 -5.2574 1.6680 31 1 6.3325 -3.7113 2.3239 32 1 7.4816 -5.0393 2.6811 33 1 8.7604 -3.6737 4.2003 34 1 7.0925 -3.1044 4.5292 35 1 8.9739 -1.3023 3.8294 36 1 7.3436 -1.1869 3.0955 37 1 9.9282 -2.1560 1.8752 38 1 8.5376 -1.3535 1.0904 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693784110.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:24:54 Heat of formation + Delta-G solvation = -81.954005 kcal Electronic energy + Delta-G solvation = -20836.494158 eV Core-core repulsion = 17678.122253 eV Total energy + Delta-G solvation = -3158.371904 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.94984 -40.68627 -38.92926 -36.58376 -36.12222 -34.29347 -33.77885 -29.68081 -28.27184 -27.75669 -26.36083 -23.84580 -22.83612 -21.51113 -21.31767 -20.79808 -19.46593 -18.44243 -17.82509 -17.11051 -16.84626 -16.48863 -16.44796 -15.91800 -15.39723 -14.83748 -14.76337 -14.47324 -14.32417 -14.12931 -13.80989 -13.58709 -13.11211 -12.66474 -12.58096 -12.54475 -12.26192 -12.00171 -11.95506 -11.89762 -11.73152 -11.56866 -11.44970 -11.37939 -11.00468 -10.48895 -10.29304 -9.99360 -8.64134 -6.17943 0.54601 1.26277 1.30604 1.36202 1.79194 2.07995 2.29550 3.05216 3.10073 3.49075 3.52954 3.62285 3.77640 3.84653 4.01439 4.23258 4.32480 4.54494 4.64507 4.70770 4.76562 4.80999 4.94481 4.97130 5.04886 5.08060 5.21485 5.25021 5.26555 5.27442 5.29899 5.48135 5.48694 5.61141 5.72800 6.11820 6.39443 6.58609 6.96448 7.14886 7.61460 8.50626 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.026471 B = 0.005346 C = 0.004977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.526447 B = 5236.643043 C = 5624.509557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.012 3.988 3 Si 0.946 3.054 4 H -0.251 1.251 5 H -0.251 1.251 6 H -0.256 1.256 7 C -0.339 4.339 8 H 0.077 0.923 9 N -0.534 5.534 10 C 0.405 3.595 11 O -0.605 6.605 12 C 0.523 3.477 13 O -0.556 6.556 14 N -0.679 5.679 15 C 0.114 3.886 16 H 0.097 0.903 17 C -0.130 4.130 18 C -0.109 4.109 19 C -0.096 4.096 20 C -0.103 4.103 21 C -0.118 4.118 22 C -0.127 4.127 23 C -0.109 4.109 24 H 0.290 0.710 25 H 0.392 0.608 26 H 0.414 0.586 27 H 0.094 0.906 28 H 0.092 0.908 29 H 0.098 0.902 30 H 0.091 0.909 31 H 0.040 0.960 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.056 0.944 35 H 0.077 0.923 36 H 0.033 0.967 37 H 0.084 0.916 38 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.518 -5.704 3.667 22.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.193 4.193 3 Si 0.766 3.234 4 H -0.175 1.175 5 H -0.175 1.175 6 H -0.179 1.179 7 C -0.469 4.469 8 H 0.095 0.905 9 N -0.172 5.172 10 C 0.190 3.810 11 O -0.492 6.492 12 C 0.305 3.695 13 O -0.435 6.435 14 N -0.330 5.330 15 C 0.010 3.990 16 H 0.115 0.885 17 C -0.168 4.168 18 C -0.146 4.146 19 C -0.097 4.097 20 C -0.141 4.141 21 C -0.156 4.156 22 C -0.165 4.165 23 C -0.147 4.147 24 H 0.101 0.899 25 H 0.228 0.772 26 H 0.251 0.749 27 H 0.113 0.887 28 H 0.110 0.890 29 H 0.116 0.884 30 H 0.110 0.890 31 H 0.058 0.942 32 H 0.102 0.898 33 H 0.106 0.894 34 H 0.075 0.925 35 H 0.095 0.905 36 H 0.052 0.948 37 H 0.103 0.897 38 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 21.349 -5.542 3.650 22.356 hybrid contribution -0.759 0.861 -0.106 1.153 sum 20.590 -4.681 3.544 21.411 Atomic orbital electron populations 1.69548 1.07825 1.30322 1.45275 1.26051 0.96352 1.02089 0.94787 0.85617 0.79317 0.77829 0.80624 1.17541 1.17479 1.17941 1.19167 0.80447 0.96020 1.51255 0.90456 1.41709 1.06619 1.07716 1.61143 1.19820 0.88690 0.84529 0.88005 1.90593 1.70285 1.31338 1.56970 1.19821 0.87601 0.85070 0.76997 1.90660 1.70280 1.31895 1.50639 1.45662 1.07648 1.07793 1.71911 1.23003 0.77176 1.00597 0.98210 0.88478 1.23296 0.98069 0.93982 1.01458 1.22793 0.95929 0.97718 0.98186 1.22503 0.96915 0.96305 0.93975 1.22072 0.97728 1.00422 0.93888 1.22497 1.01129 0.95233 0.96728 1.22374 0.99801 0.97410 0.96913 1.22039 1.00527 0.95804 0.96288 0.89927 0.77204 0.74878 0.88720 0.88951 0.88368 0.89001 0.94152 0.89804 0.89386 0.92471 0.90474 0.94795 0.89715 0.93368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -51.35 13.94 21.77 0.30 -51.05 16 2 C 0.01 0.67 5.51 85.14 0.47 1.14 16 3 Si 0.95 40.13 27.74 68.60 1.90 42.04 16 4 H -0.25 -10.14 7.11 99.48 0.71 -9.43 16 5 H -0.25 -10.18 6.53 99.48 0.65 -9.53 16 6 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 7 C -0.34 -19.97 10.16 84.35 0.86 -19.12 16 8 H 0.08 5.20 7.37 -2.91 -0.02 5.18 16 9 N -0.53 -27.83 5.06 -308.87 -1.56 -29.39 16 10 C 0.40 20.16 7.82 87.08 0.68 20.84 16 11 O -0.60 -33.14 16.03 -3.73 -0.06 -33.20 16 12 C 0.52 21.35 7.72 87.08 0.67 22.02 16 13 O -0.56 -23.74 16.02 -3.53 -0.06 -23.80 16 14 N -0.68 -21.30 3.97 -442.96 -1.76 -23.06 16 15 C 0.11 2.72 3.37 45.31 0.15 2.88 16 16 H 0.10 2.50 7.96 -2.39 -0.02 2.48 16 17 C -0.13 -2.02 7.63 31.28 0.24 -1.78 16 18 C -0.11 -1.49 7.14 30.98 0.22 -1.27 16 19 C -0.10 -2.02 1.11 -51.92 -0.06 -2.08 16 20 C -0.10 -2.38 5.81 31.49 0.18 -2.20 16 21 C -0.12 -2.51 6.91 31.97 0.22 -2.29 16 22 C -0.13 -3.04 6.84 31.76 0.22 -2.83 16 23 C -0.11 -2.49 6.33 31.15 0.20 -2.29 16 24 H 0.29 15.05 8.30 -92.71 -0.77 14.28 16 25 H 0.39 18.83 5.22 -92.71 -0.48 18.35 16 26 H 0.41 12.44 8.08 -92.70 -0.75 11.69 16 27 H 0.09 1.39 8.10 -2.39 -0.02 1.37 16 28 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 29 H 0.10 1.11 8.11 -2.38 -0.02 1.09 16 30 H 0.09 1.01 8.03 -2.39 -0.02 0.99 16 31 H 0.04 1.21 6.85 -2.39 -0.02 1.20 16 32 H 0.08 1.57 7.88 -2.39 -0.02 1.55 16 33 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.03 1.01 8.14 -2.38 -0.02 0.99 16 37 H 0.08 1.50 7.91 -2.39 -0.02 1.48 16 38 H 0.05 1.37 7.54 -2.39 -0.02 1.35 16 Total: -1.00 -69.14 311.91 2.61 -66.53 By element: Atomic # 1 Polarization: 39.12 SS G_CDS: -0.21 Total: 38.92 kcal Atomic # 6 Polarization: 8.97 SS G_CDS: 4.05 Total: 13.02 kcal Atomic # 7 Polarization: -100.49 SS G_CDS: -3.02 Total: -103.51 kcal Atomic # 8 Polarization: -56.88 SS G_CDS: -0.12 Total: -56.99 kcal Atomic # 14 Polarization: 40.13 SS G_CDS: 1.90 Total: 42.04 kcal Total: -69.14 2.61 -66.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693784110.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.429 kcal (2) G-P(sol) polarization free energy of solvation -69.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds