Wall clock time and date at job start Mon Mar 30 2020 04:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30840 * 125.89846 * 2 1 4 4 N 1.40084 * 108.20696 * 180.02562 * 3 2 1 5 5 C 1.46496 * 126.03866 * 179.97438 * 4 3 2 6 6 H 1.08999 * 109.47280 * 180.02562 * 5 4 3 7 7 C 1.52996 * 109.47596 * 300.03050 * 5 4 3 8 8 C 1.52999 * 109.46983 * 60.03009 * 5 4 3 9 9 C 1.50702 * 109.47522 * 175.00096 * 8 5 4 10 10 H 1.08002 * 119.99446 * 359.97438 * 9 8 5 11 11 C 1.37871 * 120.00072 * 180.02562 * 9 8 5 12 12 N 1.31516 * 119.99826 * 179.72119 * 11 9 8 13 13 Si 1.86800 * 120.00406 * 359.97438 * 11 9 8 14 14 H 1.48501 * 109.46758 * 269.72576 * 13 11 9 15 15 H 1.48499 * 109.47026 * 29.72423 * 13 11 9 16 16 H 1.48496 * 109.47474 * 149.72459 * 13 11 9 17 17 C 1.34948 * 107.92302 * 0.26641 * 4 3 2 18 18 C 1.50699 * 126.12502 * 179.73241 * 17 4 3 19 19 C 1.35319 * 107.74792 * 359.57331 * 17 4 3 20 20 C 1.50694 * 126.04102 * 180.16052 * 19 17 4 21 21 C 1.50694 * 109.47407 * 270.28314 * 20 19 17 22 22 O 1.20829 * 120.00116 * 0.02562 * 21 20 19 23 23 O 1.34230 * 120.00296 * 179.97438 * 21 20 19 24 24 H 1.09002 * 109.47746 * 89.97637 * 1 2 3 25 25 H 1.09006 * 109.47489 * 209.97661 * 1 2 3 26 26 H 1.09003 * 109.47677 * 329.97389 * 1 2 3 27 27 H 1.09007 * 109.47198 * 59.99701 * 7 5 4 28 28 H 1.09001 * 109.47667 * 179.97438 * 7 5 4 29 29 H 1.09008 * 109.47037 * 300.00182 * 7 5 4 30 30 H 1.09000 * 109.47527 * 54.99694 * 8 5 4 31 31 H 1.09001 * 109.47054 * 294.99785 * 8 5 4 32 32 H 0.96999 * 120.00128 * 180.27192 * 12 11 9 33 33 H 1.09002 * 109.46967 * 90.00022 * 18 17 4 34 34 H 1.09002 * 109.47286 * 209.99823 * 18 17 4 35 35 H 1.08996 * 109.47567 * 330.00244 * 18 17 4 36 36 H 1.08997 * 109.47427 * 30.28642 * 20 19 17 37 37 H 1.09001 * 109.47390 * 150.28605 * 20 19 17 38 38 H 0.96698 * 117.00539 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6342 -0.0006 5 6 4.7898 1.5008 -0.0013 6 1 5.6907 0.8873 -0.0021 7 6 4.7734 2.3844 -1.2502 8 6 4.7753 2.3837 1.2482 9 6 6.0491 3.1865 1.3109 10 1 6.7947 3.0776 0.5372 11 6 6.2631 4.0593 2.3566 12 7 7.3772 4.7558 2.4142 13 14 4.9739 4.2472 3.6953 14 1 4.0262 5.3276 3.3215 15 1 4.2323 2.9701 3.8510 16 1 5.6383 4.5932 4.9774 17 6 3.6142 -0.7153 -0.0069 18 6 4.8350 -1.5988 -0.0155 19 6 2.3271 -1.1330 -0.0006 20 6 1.8599 -2.5657 -0.0009 21 6 1.7030 -3.0427 -1.4217 22 8 1.9461 -2.2960 -2.3400 23 8 1.2941 -4.2974 -1.6673 24 1 -0.3635 0.0004 -1.0276 25 1 -0.3634 -0.8902 0.5135 26 1 -0.3634 0.8897 0.5142 27 1 3.8725 2.9980 -1.2494 28 1 5.6520 3.0296 -1.2506 29 1 4.7837 1.7554 -2.1405 30 1 4.6974 1.7559 2.1358 31 1 3.9215 3.0599 1.2053 32 1 7.5295 5.3669 3.1520 33 1 5.1330 -1.8166 1.0101 34 1 4.6057 -2.5304 -0.5328 35 1 5.6493 -1.0885 -0.5298 36 1 2.5937 -3.1873 0.5120 37 1 0.9015 -2.6355 0.5136 38 1 1.2079 -4.5576 -2.5946 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695870189.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:01 Heat of formation + Delta-G solvation = -37.274779 kcal Electronic energy + Delta-G solvation = -20478.152007 eV Core-core repulsion = 17321.717539 eV Total energy + Delta-G solvation = -3156.434468 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.22680 -39.97052 -36.19903 -35.61113 -32.97928 -32.85699 -31.60670 -29.32589 -27.94881 -26.91605 -26.08539 -23.35838 -21.93603 -20.68798 -19.19711 -18.53194 -18.10081 -17.10077 -16.51732 -15.92219 -15.55738 -14.92549 -14.33268 -13.89565 -13.79916 -13.29457 -13.23013 -13.10258 -13.01183 -12.76605 -12.34187 -12.28864 -12.14991 -11.83177 -11.68580 -11.50160 -11.33794 -11.20560 -10.95301 -10.57009 -10.35919 -10.14904 -9.92090 -9.88735 -9.33551 -8.62978 -8.60028 -7.98002 -6.14538 -4.14696 2.22804 2.22959 2.73620 2.98425 3.27769 3.34850 3.40826 3.41764 4.38482 4.70956 4.86121 4.96971 5.15425 5.19860 5.23076 5.39517 5.49240 5.50049 5.57324 5.64504 5.75183 5.77980 5.87215 5.97046 5.97596 6.18240 6.36346 6.43570 6.51233 6.52855 6.80385 7.01852 7.04864 7.23050 7.48169 7.71073 7.89407 8.20137 8.37360 8.85923 9.46840 10.97730 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.030032 B = 0.004845 C = 0.004616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.114165 B = 5777.210003 C = 6064.600275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.073 3.927 3 N -0.284 5.284 4 N -0.341 5.341 5 C 0.163 3.837 6 H 0.096 0.904 7 C -0.146 4.146 8 C -0.013 4.013 9 C -0.523 4.523 10 H 0.077 0.923 11 C 0.074 3.926 12 N -0.898 5.898 13 Si 0.877 3.123 14 H -0.275 1.275 15 H -0.266 1.266 16 H -0.286 1.286 17 C 0.105 3.895 18 C -0.095 4.095 19 C -0.255 4.255 20 C -0.022 4.022 21 C 0.471 3.529 22 O -0.503 6.503 23 O -0.525 6.525 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.061 0.939 28 H 0.087 0.913 29 H 0.040 0.960 30 H 0.019 0.981 31 H 0.027 0.973 32 H 0.265 0.735 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.106 0.894 37 H 0.108 0.892 38 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.203 -17.176 -5.214 21.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.093 4.093 3 N -0.106 5.106 4 N -0.121 5.121 5 C 0.064 3.936 6 H 0.114 0.886 7 C -0.204 4.204 8 C -0.051 4.051 9 C -0.561 4.561 10 H 0.095 0.905 11 C -0.128 4.128 12 N -0.536 5.536 13 Si 0.705 3.295 14 H -0.201 1.201 15 H -0.191 1.191 16 H -0.212 1.212 17 C -0.026 4.026 18 C -0.153 4.153 19 C -0.267 4.267 20 C -0.060 4.060 21 C 0.312 3.688 22 O -0.389 6.389 23 O -0.337 6.337 24 H 0.089 0.911 25 H 0.089 0.911 26 H 0.090 0.910 27 H 0.081 0.919 28 H 0.106 0.894 29 H 0.059 0.941 30 H 0.037 0.963 31 H 0.046 0.954 32 H 0.075 0.925 33 H 0.101 0.899 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.124 0.876 37 H 0.126 0.874 38 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -10.803 -15.288 -4.949 19.363 hybrid contribution -0.586 -0.772 0.096 0.974 sum -11.389 -16.060 -4.853 20.278 Atomic orbital electron populations 1.20102 0.87527 1.02755 1.02430 1.21989 0.96396 0.90355 1.00552 1.77318 0.86758 1.22295 1.24237 1.49140 1.05800 1.03737 1.53449 1.21635 0.81489 0.91283 0.99222 0.88583 1.22007 1.04158 0.99540 0.94679 1.19865 0.98836 0.94921 0.91437 1.20913 1.02100 1.22854 1.10276 0.90465 1.24914 0.95241 0.94979 0.97677 1.69890 1.24888 1.26605 1.32184 0.86809 0.82035 0.79186 0.81511 1.20059 1.19117 1.21245 1.20786 0.96269 0.85496 1.00018 1.20468 0.93639 0.97809 1.03362 1.18765 0.91647 0.93562 1.22716 1.19383 1.04276 0.92975 0.89397 1.23918 0.72676 0.78653 0.93546 1.90739 1.45657 1.55556 1.46936 1.84556 1.80493 1.32677 1.35997 0.91053 0.91111 0.90974 0.91943 0.89414 0.94094 0.96261 0.95443 0.92512 0.89896 0.90552 0.90624 0.87610 0.87401 0.73702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.86 10.26 36.00 0.37 -0.49 16 2 C 0.07 1.23 7.22 -82.41 -0.59 0.63 16 3 N -0.28 -5.73 12.43 33.67 0.42 -5.31 16 4 N -0.34 -6.67 3.28 -50.70 -0.17 -6.83 16 5 C 0.16 3.33 3.06 -67.94 -0.21 3.13 16 6 H 0.10 1.83 6.67 -51.93 -0.35 1.48 16 7 C -0.15 -2.85 9.26 37.16 0.34 -2.50 16 8 C -0.01 -0.30 3.77 -27.88 -0.11 -0.41 16 9 C -0.52 -14.33 8.96 -34.44 -0.31 -14.64 16 10 H 0.08 2.21 7.30 -52.49 -0.38 1.82 16 11 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 12 N -0.90 -26.97 13.96 55.43 0.77 -26.20 16 13 Si 0.88 21.90 27.47 -169.99 -4.67 17.23 16 14 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 15 H -0.27 -6.58 6.54 56.52 0.37 -6.21 16 16 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 17 C 0.10 1.73 6.93 -82.26 -0.57 1.16 16 18 C -0.09 -1.19 9.55 36.01 0.34 -0.85 16 19 C -0.26 -3.87 4.59 -105.06 -0.48 -4.36 16 20 C -0.02 -0.23 5.71 -29.04 -0.17 -0.40 16 21 C 0.47 5.42 8.32 36.00 0.30 5.72 16 22 O -0.50 -7.87 16.79 -18.75 -0.31 -8.19 16 23 O -0.52 -4.36 13.42 -39.26 -0.53 -4.89 16 24 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.07 0.68 7.26 -51.93 -0.38 0.30 16 26 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 28 H 0.09 1.75 6.95 -51.93 -0.36 1.39 16 29 H 0.04 0.72 8.14 -51.92 -0.42 0.30 16 30 H 0.02 0.48 7.20 -51.93 -0.37 0.11 16 31 H 0.03 0.70 7.57 -51.93 -0.39 0.30 16 32 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 33 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.08 0.80 7.79 -51.93 -0.40 0.40 16 35 H 0.07 0.95 7.10 -51.93 -0.37 0.58 16 36 H 0.11 0.90 7.79 -51.93 -0.40 0.50 16 37 H 0.11 0.91 7.26 -51.93 -0.38 0.53 16 38 H 0.40 1.81 9.10 45.56 0.41 2.22 16 LS Contribution 322.22 15.07 4.86 4.86 Total: -1.00 -34.79 322.22 -5.46 -40.25 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -4.65 Total: 0.07 kcal Atomic # 6 Polarization: -9.81 SS G_CDS: -1.18 Total: -10.99 kcal Atomic # 7 Polarization: -39.37 SS G_CDS: 1.03 Total: -38.34 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: -0.84 Total: -13.07 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.67 Total: 17.23 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -34.79 -5.46 -40.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695870189.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.973 kcal (2) G-P(sol) polarization free energy of solvation -34.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds