Wall clock time and date at job start Mon Mar 30 2020 04:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 120.00193 * 2 1 4 4 H 1.48501 * 109.46961 * 270.00294 * 3 2 1 5 5 H 1.48504 * 109.46744 * 29.99886 * 3 2 1 6 6 H 1.48494 * 109.47564 * 149.99961 * 3 2 1 7 7 C 1.37879 * 120.00218 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99912 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00193 * 179.97438 * 7 2 1 10 10 N 1.46896 * 109.47056 * 179.97438 * 9 7 2 11 11 C 1.46844 * 110.99935 * 66.05037 * 10 9 7 12 12 C 1.53041 * 109.52862 * 185.83814 * 11 10 9 13 13 C 1.53120 * 109.27332 * 300.82197 * 12 11 10 14 14 H 1.09007 * 109.52132 * 297.74321 * 13 12 11 15 15 C 1.53006 * 109.51965 * 177.55762 * 13 12 11 16 16 F 1.39897 * 109.47412 * 53.56234 * 15 13 12 17 17 F 1.39899 * 109.46993 * 173.56110 * 15 13 12 18 18 F 1.39899 * 109.46891 * 293.55814 * 15 13 12 19 19 C 1.53112 * 109.16602 * 57.65100 * 13 12 11 20 20 H 1.09004 * 109.53430 * 62.30244 * 19 13 12 21 21 C 1.52997 * 109.50705 * 182.40403 * 19 13 12 22 22 N 1.46902 * 109.47281 * 180.65162 * 21 19 13 23 23 C 1.46843 * 110.99962 * 190.25716 * 10 9 7 24 24 H 0.97006 * 120.00177 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.46933 * 60.00177 * 9 7 2 26 26 H 1.08994 * 109.47307 * 300.00061 * 9 7 2 27 27 H 1.09001 * 109.46624 * 65.81897 * 11 10 9 28 28 H 1.09008 * 109.45341 * 305.84476 * 11 10 9 29 29 H 1.09003 * 109.50020 * 60.75856 * 12 11 10 30 30 H 1.08995 * 109.50506 * 180.87584 * 12 11 10 31 31 H 1.08999 * 109.47090 * 300.65096 * 21 19 13 32 32 H 1.08997 * 109.47033 * 60.64974 * 21 19 13 33 33 H 1.00894 * 110.99755 * 180.02562 * 22 21 19 34 34 H 1.00903 * 110.99808 * 303.95421 * 22 21 19 35 35 H 1.09001 * 109.46228 * 294.17814 * 23 10 9 36 36 H 1.08996 * 109.46831 * 54.15870 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0014 9 6 3.5116 -1.1940 0.0000 10 7 4.0012 -2.5790 0.0013 11 6 3.6514 -3.2620 -1.2507 12 6 4.0467 -4.7375 -1.1562 13 6 5.5526 -4.8419 -0.8994 14 1 6.0961 -4.4064 -1.7380 15 6 5.9439 -6.3128 -0.7434 16 9 5.4904 -7.0361 -1.8516 17 9 7.3361 -6.4182 -0.6557 18 9 5.3630 -6.8289 0.4200 19 6 5.8976 -4.0816 0.3841 20 1 5.3847 -4.5413 1.2290 21 6 7.4091 -4.1302 0.6160 22 7 7.7375 -3.4140 1.8559 23 6 5.4485 -2.6252 0.2449 24 1 -0.4851 0.8401 -0.0004 25 1 3.8752 -0.6796 0.8895 26 1 3.8746 -0.6808 -0.8905 27 1 4.1838 -2.7958 -2.0798 28 1 2.5773 -3.1839 -1.4190 29 1 3.5042 -5.2077 -0.3359 30 1 3.8011 -5.2406 -2.0913 31 1 7.7306 -5.1683 0.7001 32 1 7.9207 -3.6582 -0.2227 33 1 8.7310 -3.4315 2.0312 34 1 7.3921 -2.4663 1.8283 35 1 5.9725 -2.1620 -0.5912 36 1 5.6799 -2.0847 1.1627 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700797495.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:02 Heat of formation + Delta-G solvation = -155.868592 kcal Electronic energy + Delta-G solvation = -21680.975603 eV Core-core repulsion = 17977.541781 eV Total energy + Delta-G solvation = -3703.433822 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.130 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -50.15469 -47.67446 -47.52861 -39.10918 -35.31486 -33.68321 -32.25608 -30.12496 -28.41484 -26.17683 -24.63794 -22.87684 -21.73646 -20.54963 -19.84022 -18.34018 -18.25526 -17.55980 -16.82029 -16.01632 -15.12718 -14.96455 -14.57797 -14.46271 -14.20941 -14.17758 -14.05525 -13.82757 -13.70523 -13.56271 -13.23321 -13.02093 -12.68051 -12.38219 -12.20857 -11.75763 -11.27622 -11.02644 -10.95523 -10.83689 -10.58820 -10.40104 -9.98900 -9.83746 -9.31354 -8.74977 -8.62339 -7.50025 -6.09569 -4.07498 2.77454 3.23935 3.32451 3.33112 3.80046 3.97994 4.03616 4.37350 4.46092 4.52038 4.84147 4.88417 5.03386 5.21016 5.25119 5.39031 5.46535 5.60055 5.68280 5.84502 5.86934 5.88337 6.08094 6.27870 6.43810 6.53276 6.76617 6.89114 7.05276 7.35365 7.53188 7.80298 7.95126 8.59468 8.98696 9.51648 11.03389 Molecular weight = 266.13amu Principal moments of inertia in cm(-1) A = 0.027982 B = 0.005534 C = 0.004891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.392676 B = 5058.008643 C = 5723.299483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.069 3.931 3 Si 0.875 3.125 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.512 4.512 8 H 0.082 0.918 9 C 0.163 3.837 10 N -0.525 5.525 11 C 0.067 3.933 12 C -0.115 4.115 13 C -0.127 4.127 14 H 0.107 0.893 15 C 0.454 3.546 16 F -0.186 7.186 17 F -0.185 7.185 18 F -0.178 7.178 19 C -0.081 4.081 20 H 0.102 0.898 21 C 0.049 3.951 22 N -0.847 5.847 23 C 0.062 3.938 24 H 0.264 0.736 25 H 0.030 0.970 26 H -0.016 1.016 27 H 0.023 0.977 28 H 0.099 0.901 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.026 0.974 33 H 0.339 0.661 34 H 0.342 0.658 35 H 0.022 0.978 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.267 -9.435 -2.257 18.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.133 4.133 3 Si 0.703 3.297 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.192 1.192 7 C -0.550 4.550 8 H 0.100 0.900 9 C 0.037 3.963 10 N -0.249 5.249 11 C -0.061 4.061 12 C -0.153 4.153 13 C -0.147 4.147 14 H 0.125 0.875 15 C 0.400 3.600 16 F -0.167 7.167 17 F -0.167 7.167 18 F -0.159 7.159 19 C -0.101 4.101 20 H 0.120 0.880 21 C -0.082 4.082 22 N -0.378 5.378 23 C -0.067 4.067 24 H 0.074 0.926 25 H 0.048 0.952 26 H 0.001 0.999 27 H 0.042 0.958 28 H 0.117 0.883 29 H 0.103 0.897 30 H 0.094 0.906 31 H 0.106 0.894 32 H 0.044 0.956 33 H 0.151 0.849 34 H 0.156 0.844 35 H 0.040 0.960 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 14.421 -10.133 -1.508 17.689 hybrid contribution 1.469 1.778 -1.325 2.660 sum 15.890 -8.355 -2.833 18.175 Atomic orbital electron populations 1.69887 1.06114 1.26892 1.50817 1.24897 0.94732 0.98830 0.94807 0.86868 0.80356 0.84122 0.78401 1.20414 1.21092 1.19231 1.21020 0.88603 0.94792 1.50555 0.90001 1.20173 0.97243 0.83712 0.95141 1.61860 1.10036 1.19100 1.33945 1.21949 1.02997 0.90869 0.90321 1.21743 0.90945 0.99467 1.03103 1.22614 1.01516 0.88247 1.02296 0.87527 1.20737 0.74124 0.91493 0.73653 1.93160 1.88918 1.80783 1.53839 1.93074 1.31055 1.96845 1.95710 1.93184 1.84160 1.88936 1.49634 1.21283 0.95521 0.97127 0.96126 0.87986 1.22261 0.94937 1.00379 0.90635 1.58723 1.20081 1.21793 1.37187 1.22030 0.90337 0.93954 1.00340 0.92603 0.95193 0.99854 0.95844 0.88280 0.89742 0.90595 0.89446 0.95569 0.84877 0.84407 0.96026 0.90329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.00 13.96 55.43 0.77 -26.23 16 2 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 3 Si 0.88 20.99 27.47 -169.99 -4.67 16.32 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 6 H -0.27 -6.14 6.54 56.52 0.37 -5.77 16 7 C -0.51 -14.07 8.99 -34.44 -0.31 -14.38 16 8 H 0.08 2.45 7.38 -52.49 -0.39 2.06 16 9 C 0.16 3.79 3.79 -4.98 -0.02 3.77 16 10 N -0.53 -10.31 4.65 -236.11 -1.10 -11.41 16 11 C 0.07 1.18 5.30 -3.83 -0.02 1.16 16 12 C -0.11 -1.63 5.10 -26.65 -0.14 -1.77 16 13 C -0.13 -1.60 1.85 -90.50 -0.17 -1.77 16 14 H 0.11 1.22 8.14 -51.93 -0.42 0.79 16 15 C 0.45 5.67 2.61 37.16 0.10 5.77 16 16 F -0.19 -2.36 16.60 2.25 0.04 -2.32 16 17 F -0.19 -2.22 14.17 2.25 0.03 -2.19 16 18 F -0.18 -2.45 16.20 2.25 0.04 -2.41 16 19 C -0.08 -1.10 1.94 -90.54 -0.18 -1.28 16 20 H 0.10 1.57 7.58 -51.93 -0.39 1.18 16 21 C 0.05 0.57 5.68 -3.82 -0.02 0.55 16 22 N -0.85 -9.38 9.61 -10.37 -0.10 -9.48 16 23 C 0.06 0.98 4.41 -3.83 -0.02 0.96 16 24 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 25 H 0.03 0.71 7.04 -51.93 -0.37 0.34 16 26 H -0.02 -0.37 7.55 -51.93 -0.39 -0.77 16 27 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.10 1.99 6.72 -51.92 -0.35 1.64 16 29 H 0.08 1.28 7.93 -51.93 -0.41 0.87 16 30 H 0.08 0.95 7.74 -51.93 -0.40 0.55 16 31 H 0.09 1.03 5.46 -51.93 -0.28 0.74 16 32 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.34 2.99 9.08 -39.30 -0.36 2.64 16 34 H 0.34 3.73 7.09 -39.29 -0.28 3.45 16 35 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.08 1.23 6.50 -51.93 -0.34 0.89 16 LS Contribution 289.48 15.07 4.36 4.36 Total: -1.00 -29.30 289.48 -6.31 -35.60 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -4.81 Total: 2.88 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: -0.87 Total: -5.13 kcal Atomic # 7 Polarization: -46.69 SS G_CDS: -0.42 Total: -47.12 kcal Atomic # 9 Polarization: -7.02 SS G_CDS: 0.11 Total: -6.92 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.67 Total: 16.32 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -29.30 -6.31 -35.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700797495.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.266 kcal (2) G-P(sol) polarization free energy of solvation -29.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds