Wall clock time and date at job start Mon Mar 30 2020 04:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 120.00193 * 2 1 4 4 H 1.48501 * 109.46961 * 270.00294 * 3 2 1 5 5 H 1.48504 * 109.46744 * 29.99886 * 3 2 1 6 6 H 1.48494 * 109.47564 * 149.99961 * 3 2 1 7 7 C 1.37879 * 120.00218 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99912 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00193 * 179.97438 * 7 2 1 10 10 N 1.46896 * 109.47056 * 179.97438 * 9 7 2 11 11 C 1.46844 * 110.99935 * 66.05037 * 10 9 7 12 12 C 1.53041 * 109.52862 * 185.83814 * 11 10 9 13 13 C 1.53120 * 109.27332 * 300.82197 * 12 11 10 14 14 H 1.09007 * 109.52132 * 297.74321 * 13 12 11 15 15 C 1.53006 * 109.51965 * 177.55762 * 13 12 11 16 16 F 1.39897 * 109.47412 * 53.56234 * 15 13 12 17 17 F 1.39899 * 109.46993 * 173.56110 * 15 13 12 18 18 F 1.39899 * 109.46891 * 293.55814 * 15 13 12 19 19 C 1.53112 * 109.16602 * 57.65100 * 13 12 11 20 20 H 1.09004 * 109.53430 * 62.30244 * 19 13 12 21 21 C 1.52997 * 109.50705 * 182.40403 * 19 13 12 22 22 N 1.46902 * 109.47281 * 180.65162 * 21 19 13 23 23 C 1.46843 * 110.99962 * 190.25716 * 10 9 7 24 24 H 0.97006 * 120.00177 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.46933 * 60.00177 * 9 7 2 26 26 H 1.08994 * 109.47307 * 300.00061 * 9 7 2 27 27 H 1.09001 * 109.46624 * 65.81897 * 11 10 9 28 28 H 1.09008 * 109.45341 * 305.84476 * 11 10 9 29 29 H 1.09003 * 109.50020 * 60.75856 * 12 11 10 30 30 H 1.08995 * 109.50506 * 180.87584 * 12 11 10 31 31 H 1.08999 * 109.47090 * 300.65096 * 21 19 13 32 32 H 1.08997 * 109.47033 * 60.64974 * 21 19 13 33 33 H 1.00894 * 110.99755 * 180.02562 * 22 21 19 34 34 H 1.00903 * 110.99808 * 303.95421 * 22 21 19 35 35 H 1.09001 * 109.46228 * 294.17814 * 23 10 9 36 36 H 1.08996 * 109.46831 * 54.15870 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0014 9 6 3.5116 -1.1940 0.0000 10 7 4.0012 -2.5790 0.0013 11 6 3.6514 -3.2620 -1.2507 12 6 4.0467 -4.7375 -1.1562 13 6 5.5526 -4.8419 -0.8994 14 1 6.0961 -4.4064 -1.7380 15 6 5.9439 -6.3128 -0.7434 16 9 5.4904 -7.0361 -1.8516 17 9 7.3361 -6.4182 -0.6557 18 9 5.3630 -6.8289 0.4200 19 6 5.8976 -4.0816 0.3841 20 1 5.3847 -4.5413 1.2290 21 6 7.4091 -4.1302 0.6160 22 7 7.7375 -3.4140 1.8559 23 6 5.4485 -2.6252 0.2449 24 1 -0.4851 0.8401 -0.0004 25 1 3.8752 -0.6796 0.8895 26 1 3.8746 -0.6808 -0.8905 27 1 4.1838 -2.7958 -2.0798 28 1 2.5773 -3.1839 -1.4190 29 1 3.5042 -5.2077 -0.3359 30 1 3.8011 -5.2406 -2.0913 31 1 7.7306 -5.1683 0.7001 32 1 7.9207 -3.6582 -0.2227 33 1 8.7310 -3.4315 2.0312 34 1 7.3921 -2.4663 1.8283 35 1 5.9725 -2.1620 -0.5912 36 1 5.6799 -2.0847 1.1627 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700797495.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:02 Heat of formation + Delta-G solvation = -177.563791 kcal Electronic energy + Delta-G solvation = -21681.916378 eV Core-core repulsion = 17977.541781 eV Total energy + Delta-G solvation = -3704.374596 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.130 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -51.15931 -48.65424 -48.56233 -40.37492 -36.61878 -35.02639 -34.13660 -31.27430 -30.14092 -27.47572 -25.86823 -24.34413 -22.97283 -22.02501 -21.02981 -19.39665 -19.28807 -18.91974 -18.54879 -17.10269 -16.56213 -16.14581 -15.98880 -15.61772 -15.53447 -15.26986 -15.16635 -14.98245 -14.85161 -14.71887 -14.53994 -14.34074 -14.11541 -13.78613 -13.58322 -13.24757 -12.73849 -12.52490 -12.39641 -12.16012 -11.95687 -11.81064 -11.73387 -11.36335 -11.18766 -10.77485 -9.58332 -9.03612 -8.26756 -6.30295 1.35372 1.37884 1.48136 1.75377 2.35475 2.76975 2.95531 3.01000 3.05630 3.14909 3.52069 3.74589 3.87511 3.99912 4.11826 4.27355 4.34090 4.43464 4.54022 4.59844 4.68449 4.78349 4.84367 4.92934 5.02914 5.10942 5.17187 5.29003 5.55385 5.98867 6.22723 6.36726 6.60990 6.66052 6.76613 7.33387 8.89772 Molecular weight = 266.13amu Principal moments of inertia in cm(-1) A = 0.027982 B = 0.005534 C = 0.004891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.392676 B = 5058.008643 C = 5723.299483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.007 3.993 3 Si 0.947 3.053 4 H -0.268 1.268 5 H -0.284 1.284 6 H -0.246 1.246 7 C -0.516 4.516 8 H 0.038 0.962 9 C 0.173 3.827 10 N -0.546 5.546 11 C 0.069 3.931 12 C -0.106 4.106 13 C -0.121 4.121 14 H 0.130 0.870 15 C 0.460 3.540 16 F -0.185 7.185 17 F -0.178 7.178 18 F -0.187 7.187 19 C -0.074 4.074 20 H 0.080 0.920 21 C 0.056 3.944 22 N -0.857 5.857 23 C 0.064 3.936 24 H 0.266 0.734 25 H 0.031 0.969 26 H -0.010 1.010 27 H 0.036 0.964 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.095 0.905 31 H 0.088 0.912 32 H 0.043 0.957 33 H 0.353 0.647 34 H 0.343 0.657 35 H 0.037 0.963 36 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.161 -9.049 -2.757 20.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.190 4.190 3 Si 0.771 3.229 4 H -0.193 1.193 5 H -0.210 1.210 6 H -0.170 1.170 7 C -0.555 4.555 8 H 0.057 0.943 9 C 0.046 3.954 10 N -0.270 5.270 11 C -0.059 4.059 12 C -0.144 4.144 13 C -0.141 4.141 14 H 0.148 0.852 15 C 0.406 3.594 16 F -0.166 7.166 17 F -0.160 7.160 18 F -0.169 7.169 19 C -0.094 4.094 20 H 0.098 0.902 21 C -0.075 4.075 22 N -0.389 5.389 23 C -0.064 4.064 24 H 0.075 0.925 25 H 0.049 0.951 26 H 0.007 0.993 27 H 0.054 0.946 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.114 0.886 31 H 0.106 0.894 32 H 0.061 0.939 33 H 0.167 0.833 34 H 0.157 0.843 35 H 0.055 0.945 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 17.352 -9.776 -2.005 20.016 hybrid contribution 0.523 1.553 -1.158 2.006 sum 17.874 -8.223 -3.163 19.928 Atomic orbital electron populations 1.70053 1.08190 1.28071 1.52616 1.25853 0.95575 1.03162 0.94424 0.85719 0.79555 0.78625 0.79045 1.19323 1.20977 1.16998 1.21277 0.91169 0.93237 1.49791 0.94340 1.19914 0.94184 0.86107 0.95188 1.61731 1.12990 1.17058 1.35221 1.21866 1.01002 0.93046 0.90022 1.21614 0.92267 0.96911 1.03630 1.22555 1.00257 0.88569 1.02717 0.85172 1.20578 0.74338 0.91108 0.73333 1.93166 1.88964 1.80762 1.53744 1.93090 1.30415 1.96795 1.95663 1.93174 1.84391 1.89056 1.50237 1.21174 0.96928 0.95485 0.95776 0.90152 1.22168 0.93113 1.00749 0.91496 1.58693 1.21349 1.21873 1.37028 1.22081 0.87707 0.95674 1.00948 0.92493 0.95060 0.99260 0.94612 0.91942 0.91262 0.88610 0.89372 0.93922 0.83337 0.84274 0.94460 0.90169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.80 13.96 21.45 0.30 -58.50 16 2 C 0.01 0.41 5.47 84.66 0.46 0.87 16 3 Si 0.95 42.97 27.47 68.60 1.88 44.86 16 4 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.25 -10.26 6.54 99.48 0.65 -9.61 16 7 C -0.52 -29.22 8.99 25.60 0.23 -28.99 16 8 H 0.04 2.44 7.38 -2.91 -0.02 2.42 16 9 C 0.17 7.93 3.79 85.56 0.32 8.25 16 10 N -0.55 -21.16 4.65 -900.93 -4.19 -25.35 16 11 C 0.07 2.41 5.30 86.33 0.46 2.87 16 12 C -0.11 -2.92 5.10 30.65 0.16 -2.76 16 13 C -0.12 -2.77 1.85 -10.71 -0.02 -2.79 16 14 H 0.13 2.44 8.14 -2.38 -0.02 2.42 16 15 C 0.46 10.44 2.61 71.98 0.19 10.62 16 16 F -0.18 -4.25 16.60 44.97 0.75 -3.51 16 17 F -0.18 -3.74 14.17 44.97 0.64 -3.10 16 18 F -0.19 -4.90 16.20 44.97 0.73 -4.17 16 19 C -0.07 -1.86 1.94 -10.74 -0.02 -1.88 16 20 H 0.08 2.39 7.58 -2.38 -0.02 2.38 16 21 C 0.06 1.12 5.68 86.30 0.49 1.61 16 22 N -0.86 -16.71 9.61 -186.72 -1.79 -18.51 16 23 C 0.06 1.88 4.41 86.33 0.38 2.26 16 24 H 0.27 15.39 8.31 -92.70 -0.77 14.62 16 25 H 0.03 1.43 7.04 -2.38 -0.02 1.41 16 26 H -0.01 -0.46 7.55 -2.39 -0.02 -0.47 16 27 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.06 2.63 6.72 -2.38 -0.02 2.61 16 29 H 0.07 2.11 7.93 -2.39 -0.02 2.10 16 30 H 0.10 2.25 7.74 -2.39 -0.02 2.23 16 31 H 0.09 1.80 5.46 -2.39 -0.01 1.79 16 32 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.35 5.22 9.08 -89.70 -0.81 4.41 16 34 H 0.34 6.60 7.09 -89.69 -0.64 5.96 16 35 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.08 2.33 6.50 -2.39 -0.02 2.31 16 Total: -1.00 -64.39 289.48 0.58 -63.81 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -0.39 Total: 14.39 kcal Atomic # 6 Polarization: -12.58 SS G_CDS: 2.65 Total: -9.93 kcal Atomic # 7 Polarization: -96.67 SS G_CDS: -5.68 Total: -102.35 kcal Atomic # 9 Polarization: -12.89 SS G_CDS: 2.11 Total: -10.78 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 1.88 Total: 44.86 kcal Total: -64.39 0.58 -63.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700797495.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.749 kcal (2) G-P(sol) polarization free energy of solvation -64.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds