Wall clock time and date at job start Mon Mar 30 2020 04:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86793 * 120.00410 * 2 1 4 4 H 1.48502 * 109.47169 * 240.00186 * 3 2 1 5 5 H 1.48509 * 109.46933 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47293 * 119.99859 * 3 2 1 7 7 C 1.37881 * 119.99616 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00047 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00151 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.47010 * 180.02562 * 9 7 2 11 11 C 1.46840 * 110.99919 * 66.04967 * 10 9 7 12 12 C 1.53041 * 109.52370 * 174.15874 * 11 10 9 13 13 C 1.53124 * 109.27636 * 59.17727 * 12 11 10 14 14 H 1.08998 * 109.51823 * 62.25542 * 13 12 11 15 15 C 1.53001 * 109.52037 * 182.44305 * 13 12 11 16 16 F 1.39894 * 109.47122 * 66.44661 * 15 13 12 17 17 F 1.39902 * 109.46811 * 186.45194 * 15 13 12 18 18 F 1.39904 * 109.46857 * 306.44543 * 15 13 12 19 19 C 1.53116 * 109.16096 * 302.34703 * 13 12 11 20 20 H 1.08997 * 109.50136 * 297.71713 * 19 13 12 21 21 C 1.52999 * 109.50286 * 177.63314 * 19 13 12 22 22 N 1.46892 * 109.47241 * 179.19463 * 21 19 13 23 23 C 1.46845 * 111.00137 * 301.83565 * 10 9 7 24 24 H 0.97004 * 119.99747 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.46725 * 60.00468 * 9 7 2 26 26 H 1.08999 * 109.47440 * 300.00407 * 9 7 2 27 27 H 1.08998 * 109.46282 * 294.17380 * 11 10 9 28 28 H 1.08998 * 109.46611 * 54.14531 * 11 10 9 29 29 H 1.09004 * 109.50457 * 179.11787 * 12 11 10 30 30 H 1.08997 * 109.50121 * 299.19752 * 12 11 10 31 31 H 1.08995 * 109.47459 * 299.19935 * 21 19 13 32 32 H 1.09009 * 109.46536 * 59.19657 * 21 19 13 33 33 H 1.00904 * 111.00233 * 56.04547 * 22 21 19 34 34 H 1.00898 * 111.00495 * 180.02562 * 22 21 19 35 35 H 1.09003 * 109.46638 * 305.85992 * 23 10 9 36 36 H 1.09007 * 109.45932 * 65.82500 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0017 10 7 2.2055 -3.6158 0.0027 11 6 2.9704 -3.6530 1.2556 12 6 3.8467 -4.9074 1.2827 13 6 4.7976 -4.8859 0.0827 14 1 5.4560 -4.0202 0.1553 15 6 5.6344 -6.1667 0.0704 16 9 4.8026 -7.2648 -0.1735 17 9 6.6020 -6.0819 -0.9365 18 9 6.2637 -6.3245 1.3098 19 6 3.9772 -4.7981 -1.2071 20 1 3.3473 -5.6829 -1.2986 21 6 4.9212 -4.7166 -2.4084 22 7 4.1336 -4.6519 -3.6466 23 6 3.0971 -3.5470 -1.1620 24 1 -0.4850 0.8401 0.0004 25 1 0.6240 -2.5575 -0.8881 26 1 0.6245 -2.5564 0.8919 27 1 3.6021 -2.7672 1.3219 28 1 2.2824 -3.6724 2.1008 29 1 4.4261 -4.9267 2.2059 30 1 3.2147 -5.7940 1.2311 31 1 5.5400 -3.8233 -2.3243 32 1 5.5594 -5.6001 -2.4295 33 1 3.4870 -3.8776 -3.6239 34 1 4.7347 -4.5978 -4.4552 35 1 2.5011 -3.4892 -2.0729 36 1 3.7283 -2.6616 -1.0844 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700797496.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:06 Heat of formation + Delta-G solvation = -162.037583 kcal Electronic energy + Delta-G solvation = -21861.719699 eV Core-core repulsion = 18158.018370 eV Total energy + Delta-G solvation = -3703.701329 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.130 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -50.08972 -47.60399 -47.47498 -38.95755 -35.16164 -33.64895 -32.15435 -29.94682 -27.76359 -25.74792 -24.68839 -23.08203 -21.58652 -20.75089 -19.65937 -18.26242 -18.19362 -17.44062 -16.49304 -15.78957 -15.02086 -14.90190 -14.62112 -14.39727 -14.11775 -14.05936 -13.82210 -13.73474 -13.63932 -13.44243 -13.16974 -12.83471 -12.44787 -12.31268 -11.68984 -11.45208 -11.12946 -11.08396 -10.80197 -10.69231 -10.48622 -10.28160 -10.04520 -9.89256 -9.58803 -8.57882 -8.50332 -7.28397 -6.10072 -4.20160 2.85436 3.21716 3.28030 3.29128 3.88913 4.08804 4.11947 4.33133 4.60874 4.78171 4.96098 5.07269 5.19827 5.22464 5.40419 5.53239 5.67660 5.81215 5.87918 5.98149 6.04061 6.17177 6.37474 6.48494 6.58873 6.69613 7.18063 7.24621 7.44215 7.53691 7.82001 7.94853 8.18489 8.20834 8.89656 9.47117 10.94880 Molecular weight = 266.13amu Principal moments of inertia in cm(-1) A = 0.025549 B = 0.005777 C = 0.005447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.662202 B = 4846.022711 C = 5139.420919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.067 3.933 3 Si 0.888 3.112 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.554 4.554 8 H 0.055 0.945 9 C 0.188 3.812 10 N -0.540 5.540 11 C 0.066 3.934 12 C -0.114 4.114 13 C -0.125 4.125 14 H 0.108 0.892 15 C 0.453 3.547 16 F -0.180 7.180 17 F -0.185 7.185 18 F -0.187 7.187 19 C -0.084 4.084 20 H 0.095 0.905 21 C 0.050 3.950 22 N -0.848 5.848 23 C 0.075 3.925 24 H 0.264 0.736 25 H 0.033 0.967 26 H 0.032 0.968 27 H 0.040 0.960 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.027 0.973 32 H 0.084 0.916 33 H 0.345 0.655 34 H 0.337 0.663 35 H 0.075 0.925 36 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.680 -9.852 -1.288 14.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.136 4.136 3 Si 0.716 3.284 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.203 1.203 7 C -0.593 4.593 8 H 0.073 0.927 9 C 0.063 3.937 10 N -0.264 5.264 11 C -0.062 4.062 12 C -0.152 4.152 13 C -0.145 4.145 14 H 0.126 0.874 15 C 0.399 3.601 16 F -0.161 7.161 17 F -0.166 7.166 18 F -0.169 7.169 19 C -0.103 4.103 20 H 0.114 0.886 21 C -0.082 4.082 22 N -0.379 5.379 23 C -0.054 4.054 24 H 0.073 0.927 25 H 0.051 0.949 26 H 0.050 0.950 27 H 0.058 0.942 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.045 0.955 32 H 0.102 0.898 33 H 0.159 0.841 34 H 0.149 0.851 35 H 0.094 0.906 36 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 9.971 -10.911 -1.100 14.822 hybrid contribution 1.606 2.575 -0.057 3.035 sum 11.577 -8.336 -1.157 14.313 Atomic orbital electron populations 1.69930 1.05993 1.27041 1.49684 1.24954 0.94757 0.99098 0.94838 0.86725 0.79722 0.83400 0.78567 1.20333 1.21105 1.20279 1.21695 0.93179 0.92141 1.52263 0.92658 1.19747 0.90645 0.85138 0.98189 1.62438 1.16849 1.46695 1.00414 1.21815 0.95811 0.94395 0.94220 1.21732 0.97039 1.01534 0.94884 1.22594 0.98090 0.93173 1.00682 0.87418 1.20810 0.78856 0.87533 0.72891 1.93167 1.71519 1.57345 1.94077 1.93076 1.65985 1.96516 1.61042 1.93153 1.83733 1.96393 1.43590 1.21350 0.96274 1.02469 0.90217 0.88628 1.22234 0.94961 1.01113 0.89857 1.58742 1.22551 1.52807 1.03801 1.21819 0.94510 0.93590 0.95476 0.92651 0.94861 0.94971 0.94169 0.90766 0.90948 0.90312 0.95506 0.89800 0.84054 0.85073 0.90635 0.94305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.39 13.29 55.43 0.74 -24.65 16 2 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 3 Si 0.89 20.75 29.54 -169.99 -5.02 15.73 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 7 C -0.55 -14.49 7.74 -34.44 -0.27 -14.76 16 8 H 0.06 1.42 5.84 -52.49 -0.31 1.12 16 9 C 0.19 4.62 5.13 -4.97 -0.03 4.60 16 10 N -0.54 -10.86 4.86 -236.11 -1.15 -12.00 16 11 C 0.07 1.18 5.14 -3.84 -0.02 1.17 16 12 C -0.11 -1.63 5.10 -26.65 -0.14 -1.77 16 13 C -0.13 -1.72 1.85 -90.50 -0.17 -1.89 16 14 H 0.11 1.42 8.14 -51.93 -0.42 1.00 16 15 C 0.45 5.97 2.61 37.16 0.10 6.07 16 16 F -0.18 -2.52 16.20 2.25 0.04 -2.48 16 17 F -0.18 -2.39 14.17 2.25 0.03 -2.36 16 18 F -0.19 -2.47 16.60 2.25 0.04 -2.43 16 19 C -0.08 -1.24 1.94 -90.54 -0.18 -1.42 16 20 H 0.10 1.54 7.58 -51.93 -0.39 1.14 16 21 C 0.05 0.66 5.68 -3.83 -0.02 0.64 16 22 N -0.85 -10.83 9.61 -10.37 -0.10 -10.93 16 23 C 0.07 1.35 3.96 -3.84 -0.02 1.33 16 24 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 25 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.03 0.85 8.06 -51.93 -0.42 0.43 16 27 H 0.04 0.77 7.03 -51.93 -0.37 0.41 16 28 H 0.07 1.34 8.06 -51.93 -0.42 0.92 16 29 H 0.07 0.92 7.74 -51.93 -0.40 0.51 16 30 H 0.08 1.14 7.93 -51.93 -0.41 0.73 16 31 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.08 1.10 5.45 -51.92 -0.28 0.81 16 33 H 0.35 4.55 7.10 -39.29 -0.28 4.28 16 34 H 0.34 3.55 9.08 -39.29 -0.36 3.19 16 35 H 0.08 1.40 6.62 -51.93 -0.34 1.05 16 36 H 0.04 0.75 6.57 -51.93 -0.34 0.41 16 LS Contribution 289.98 15.07 4.37 4.37 Total: -1.00 -27.52 289.98 -6.60 -34.12 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -4.72 Total: 4.96 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: -0.83 Total: -4.33 kcal Atomic # 7 Polarization: -47.08 SS G_CDS: -0.51 Total: -47.59 kcal Atomic # 9 Polarization: -7.38 SS G_CDS: 0.11 Total: -7.27 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -27.52 -6.60 -34.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700797496.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.914 kcal (2) G-P(sol) polarization free energy of solvation -27.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds