Wall clock time and date at job start Mon Mar 30 2020 04:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86793 * 120.00410 * 2 1 4 4 H 1.48502 * 109.47169 * 240.00186 * 3 2 1 5 5 H 1.48509 * 109.46933 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47293 * 119.99859 * 3 2 1 7 7 C 1.37881 * 119.99616 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00047 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00151 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.47010 * 180.02562 * 9 7 2 11 11 C 1.46840 * 110.99919 * 66.04967 * 10 9 7 12 12 C 1.53041 * 109.52370 * 174.15874 * 11 10 9 13 13 C 1.53124 * 109.27636 * 59.17727 * 12 11 10 14 14 H 1.08998 * 109.51823 * 62.25542 * 13 12 11 15 15 C 1.53001 * 109.52037 * 182.44305 * 13 12 11 16 16 F 1.39894 * 109.47122 * 66.44661 * 15 13 12 17 17 F 1.39902 * 109.46811 * 186.45194 * 15 13 12 18 18 F 1.39904 * 109.46857 * 306.44543 * 15 13 12 19 19 C 1.53116 * 109.16096 * 302.34703 * 13 12 11 20 20 H 1.08997 * 109.50136 * 297.71713 * 19 13 12 21 21 C 1.52999 * 109.50286 * 177.63314 * 19 13 12 22 22 N 1.46892 * 109.47241 * 179.19463 * 21 19 13 23 23 C 1.46845 * 111.00137 * 301.83565 * 10 9 7 24 24 H 0.97004 * 119.99747 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.46725 * 60.00468 * 9 7 2 26 26 H 1.08999 * 109.47440 * 300.00407 * 9 7 2 27 27 H 1.08998 * 109.46282 * 294.17380 * 11 10 9 28 28 H 1.08998 * 109.46611 * 54.14531 * 11 10 9 29 29 H 1.09004 * 109.50457 * 179.11787 * 12 11 10 30 30 H 1.08997 * 109.50121 * 299.19752 * 12 11 10 31 31 H 1.08995 * 109.47459 * 299.19935 * 21 19 13 32 32 H 1.09009 * 109.46536 * 59.19657 * 21 19 13 33 33 H 1.00904 * 111.00233 * 56.04547 * 22 21 19 34 34 H 1.00898 * 111.00495 * 180.02562 * 22 21 19 35 35 H 1.09003 * 109.46638 * 305.85992 * 23 10 9 36 36 H 1.09007 * 109.45932 * 65.82500 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0017 10 7 2.2055 -3.6158 0.0027 11 6 2.9704 -3.6530 1.2556 12 6 3.8467 -4.9074 1.2827 13 6 4.7976 -4.8859 0.0827 14 1 5.4560 -4.0202 0.1553 15 6 5.6344 -6.1667 0.0704 16 9 4.8026 -7.2648 -0.1735 17 9 6.6020 -6.0819 -0.9365 18 9 6.2637 -6.3245 1.3098 19 6 3.9772 -4.7981 -1.2071 20 1 3.3473 -5.6829 -1.2986 21 6 4.9212 -4.7166 -2.4084 22 7 4.1336 -4.6519 -3.6466 23 6 3.0971 -3.5470 -1.1620 24 1 -0.4850 0.8401 0.0004 25 1 0.6240 -2.5575 -0.8881 26 1 0.6245 -2.5564 0.8919 27 1 3.6021 -2.7672 1.3219 28 1 2.2824 -3.6724 2.1008 29 1 4.4261 -4.9267 2.2059 30 1 3.2147 -5.7940 1.2311 31 1 5.5400 -3.8233 -2.3243 32 1 5.5594 -5.6001 -2.4295 33 1 3.4870 -3.8776 -3.6239 34 1 4.7347 -4.5978 -4.4552 35 1 2.5011 -3.4892 -2.0729 36 1 3.7283 -2.6616 -1.0844 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700797496.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:06 Heat of formation + Delta-G solvation = -181.299018 kcal Electronic energy + Delta-G solvation = -21862.554938 eV Core-core repulsion = 18158.018370 eV Total energy + Delta-G solvation = -3704.536568 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.130 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -51.14501 -48.64276 -48.54155 -40.35097 -36.60593 -35.08533 -33.95914 -31.21373 -29.43822 -27.26629 -26.09061 -24.61012 -22.93478 -22.15480 -21.01692 -19.40843 -19.26868 -18.64144 -18.34846 -17.08845 -16.62563 -16.23924 -15.83637 -15.53165 -15.42717 -15.18712 -15.14101 -15.08171 -14.83794 -14.70139 -14.40069 -14.20257 -14.04266 -13.59675 -13.22704 -13.04268 -12.89779 -12.63092 -12.22828 -12.18475 -12.10009 -11.90417 -11.75091 -11.45105 -11.15546 -10.60228 -9.60128 -9.03070 -8.15024 -6.35205 1.37565 1.37933 1.46137 1.76783 2.36625 2.78819 2.98350 3.03595 3.10030 3.29534 3.54568 3.78005 3.91526 4.04931 4.17683 4.32301 4.44606 4.53559 4.62621 4.71609 4.81969 4.87091 4.94815 5.05009 5.18151 5.29027 5.32306 5.34544 5.74456 6.03444 6.20173 6.24121 6.53795 6.59131 6.85657 7.36718 8.87019 Molecular weight = 266.13amu Principal moments of inertia in cm(-1) A = 0.025549 B = 0.005777 C = 0.005447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.662202 B = 4846.022711 C = 5139.420919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.013 3.987 3 Si 0.954 3.046 4 H -0.269 1.269 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.557 4.557 8 H 0.060 0.940 9 C 0.201 3.799 10 N -0.543 5.543 11 C 0.066 3.934 12 C -0.104 4.104 13 C -0.124 4.124 14 H 0.119 0.881 15 C 0.463 3.537 16 F -0.184 7.184 17 F -0.181 7.181 18 F -0.184 7.184 19 C -0.073 4.073 20 H 0.086 0.914 21 C 0.054 3.946 22 N -0.855 5.855 23 C 0.081 3.919 24 H 0.265 0.735 25 H 0.005 0.995 26 H 0.006 0.994 27 H 0.028 0.972 28 H 0.067 0.933 29 H 0.096 0.904 30 H 0.079 0.921 31 H 0.032 0.968 32 H 0.092 0.908 33 H 0.342 0.658 34 H 0.351 0.649 35 H 0.065 0.935 36 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.778 -10.113 -1.295 16.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.186 4.186 3 Si 0.780 3.220 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.195 1.195 7 C -0.595 4.595 8 H 0.078 0.922 9 C 0.075 3.925 10 N -0.267 5.267 11 C -0.062 4.062 12 C -0.142 4.142 13 C -0.144 4.144 14 H 0.137 0.863 15 C 0.409 3.591 16 F -0.165 7.165 17 F -0.162 7.162 18 F -0.165 7.165 19 C -0.092 4.092 20 H 0.104 0.896 21 C -0.077 4.077 22 N -0.386 5.386 23 C -0.048 4.048 24 H 0.074 0.926 25 H 0.024 0.976 26 H 0.024 0.976 27 H 0.046 0.954 28 H 0.086 0.914 29 H 0.115 0.885 30 H 0.098 0.902 31 H 0.051 0.949 32 H 0.110 0.890 33 H 0.155 0.845 34 H 0.165 0.835 35 H 0.083 0.917 36 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 12.098 -11.195 -1.115 16.521 hybrid contribution 0.932 2.606 -0.062 2.769 sum 13.030 -8.588 -1.177 15.650 Atomic orbital electron populations 1.70060 1.07602 1.27923 1.50922 1.25794 0.95532 1.02748 0.94574 0.85667 0.78438 0.79003 0.78931 1.19455 1.20974 1.19513 1.21951 0.93430 0.92787 1.51375 0.92230 1.19389 0.91100 0.86527 0.95507 1.62355 1.17576 1.44403 1.02325 1.21841 0.95706 0.95887 0.92766 1.21635 0.96774 0.99337 0.96427 1.22540 0.98104 0.94205 0.99533 0.86336 1.20515 0.78711 0.86833 0.73068 1.93168 1.71710 1.57516 1.94117 1.93087 1.65750 1.96464 1.60889 1.93166 1.83626 1.96333 1.43395 1.21198 0.96112 1.00020 0.91898 0.89574 1.22187 0.94526 1.01722 0.89252 1.58732 1.22901 1.52684 1.04309 1.21768 0.94096 0.94829 0.94077 0.92624 0.97647 0.97593 0.95395 0.91435 0.88529 0.90188 0.94932 0.89005 0.84465 0.83512 0.91651 0.95608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.92 13.29 21.45 0.28 -53.64 16 2 C 0.01 0.72 5.46 84.66 0.46 1.18 16 3 Si 0.95 42.42 29.54 68.60 2.03 44.44 16 4 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 5 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 6 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 7 C -0.56 -29.44 7.74 25.60 0.20 -29.25 16 8 H 0.06 3.05 5.84 -2.91 -0.02 3.03 16 9 C 0.20 10.23 5.13 85.56 0.44 10.67 16 10 N -0.54 -22.07 4.86 -900.93 -4.38 -26.44 16 11 C 0.07 2.34 5.14 86.33 0.44 2.78 16 12 C -0.10 -2.77 5.10 30.65 0.16 -2.62 16 13 C -0.12 -3.11 1.85 -10.71 -0.02 -3.13 16 14 H 0.12 2.80 8.14 -2.39 -0.02 2.78 16 15 C 0.46 10.90 2.61 71.98 0.19 11.09 16 16 F -0.18 -4.69 16.20 44.97 0.73 -3.96 16 17 F -0.18 -4.13 14.17 44.97 0.64 -3.50 16 18 F -0.18 -4.28 16.60 44.97 0.75 -3.53 16 19 C -0.07 -2.06 1.94 -10.74 -0.02 -2.08 16 20 H 0.09 2.65 7.58 -2.39 -0.02 2.63 16 21 C 0.05 1.33 5.68 86.30 0.49 1.82 16 22 N -0.85 -20.52 9.61 -186.73 -1.79 -22.32 16 23 C 0.08 2.89 3.96 86.33 0.34 3.23 16 24 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 25 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 26 H 0.01 0.33 8.06 -2.39 -0.02 0.31 16 27 H 0.03 1.05 7.03 -2.39 -0.02 1.04 16 28 H 0.07 2.44 8.06 -2.39 -0.02 2.42 16 29 H 0.10 2.16 7.74 -2.38 -0.02 2.14 16 30 H 0.08 2.16 7.93 -2.39 -0.02 2.14 16 31 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.09 2.15 5.45 -2.38 -0.01 2.14 16 33 H 0.34 8.75 7.10 -89.69 -0.64 8.11 16 34 H 0.35 6.72 9.08 -89.70 -0.81 5.91 16 35 H 0.07 2.45 6.62 -2.39 -0.02 2.43 16 36 H 0.03 0.99 6.57 -2.38 -0.02 0.97 16 Total: -1.00 -58.48 289.98 0.60 -57.88 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: -0.33 Total: 17.37 kcal Atomic # 6 Polarization: -8.98 SS G_CDS: 2.68 Total: -6.30 kcal Atomic # 7 Polarization: -96.51 SS G_CDS: -5.89 Total: -102.40 kcal Atomic # 9 Polarization: -13.10 SS G_CDS: 2.11 Total: -10.99 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.44 kcal Total: -58.48 0.60 -57.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700797496.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.418 kcal (2) G-P(sol) polarization free energy of solvation -58.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds