Wall clock time and date at job start Mon Mar 30 2020 05:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.41259 * 128.07775 * 2 1 4 4 N 1.30122 * 106.59248 * 180.25098 * 3 2 1 5 5 O 1.20881 * 111.98534 * 359.76240 * 4 3 2 6 6 C 1.34639 * 111.46591 * 0.02562 * 5 4 3 7 7 C 1.47517 * 126.94561 * 179.97438 * 6 5 4 8 8 O 1.21582 * 119.99896 * 186.24402 * 7 6 5 9 9 N 1.34772 * 119.99935 * 6.24505 * 7 6 5 10 10 C 1.46503 * 119.99954 * 355.40162 * 9 7 6 11 11 C 1.50696 * 109.46842 * 276.44089 * 10 9 7 12 12 H 1.07996 * 120.00512 * 359.97438 * 11 10 9 13 13 C 1.37887 * 119.99543 * 180.02562 * 11 10 9 14 14 N 1.31503 * 120.00207 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99500 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.46992 * 90.00111 * 15 13 11 17 17 H 1.48502 * 109.46927 * 209.99961 * 15 13 11 18 18 H 1.48493 * 109.47446 * 330.00315 * 15 13 11 19 19 C 1.46497 * 120.00281 * 175.40262 * 9 7 6 20 20 C 1.53007 * 109.47222 * 264.27650 * 19 9 7 21 21 C 1.53000 * 109.47099 * 65.42040 * 20 19 9 22 22 C 1.52996 * 109.46903 * 185.42139 * 20 19 9 23 23 H 1.09000 * 109.46686 * 270.13298 * 1 2 3 24 24 H 1.08994 * 109.47361 * 30.13775 * 1 2 3 25 25 H 1.09007 * 109.46623 * 150.13895 * 1 2 3 26 26 H 1.08004 * 126.70230 * 0.02562 * 3 2 1 27 27 H 1.09003 * 109.47206 * 36.43906 * 10 9 7 28 28 H 1.08997 * 109.47147 * 156.43965 * 10 9 7 29 29 H 0.97001 * 120.00210 * 180.02562 * 14 13 11 30 30 H 1.09008 * 109.47073 * 24.26942 * 19 9 7 31 31 H 1.08991 * 109.47645 * 144.27187 * 19 9 7 32 32 H 1.09000 * 109.46738 * 305.42043 * 20 19 9 33 33 H 1.09004 * 109.47153 * 64.72154 * 21 20 19 34 34 H 1.08996 * 109.47047 * 184.71801 * 21 20 19 35 35 H 1.08996 * 109.47178 * 304.72137 * 21 20 19 36 36 H 1.09001 * 109.47285 * 60.00436 * 22 20 19 37 37 H 1.09000 * 109.47123 * 179.97438 * 22 20 19 38 38 H 1.08991 * 109.47597 * 299.99568 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3782 1.1120 0.0000 4 7 3.5890 0.6354 -0.0055 5 8 3.5996 -0.5734 -0.0041 6 6 2.3509 -1.0770 0.0021 7 6 1.9697 -2.5021 0.0049 8 8 0.8009 -2.8188 -0.1039 9 7 2.9169 -3.4528 0.1282 10 6 4.3326 -3.0769 0.1579 11 6 4.8391 -2.9153 -1.2521 12 1 4.1733 -3.0769 -2.0870 13 6 6.1529 -2.5622 -1.4764 14 7 6.9640 -2.3668 -0.4599 15 14 6.7810 -2.3626 -3.2244 16 1 6.5881 -0.9567 -3.6621 17 1 8.2258 -2.7024 -3.2730 18 1 6.0284 -3.2698 -4.1274 19 6 2.5310 -4.8622 0.2323 20 6 2.4726 -5.2674 1.7066 21 6 1.3491 -4.4970 2.4032 22 6 2.2026 -6.7696 1.8123 23 1 -0.3633 0.0024 1.0277 24 1 -0.3634 0.8887 -0.5159 25 1 -0.3633 -0.8913 -0.5117 26 1 2.0947 2.1541 0.0004 27 1 4.4473 -2.1355 0.6953 28 1 4.9047 -3.8554 0.6626 29 1 7.8882 -2.1180 -0.6177 30 1 1.5508 -5.0051 -0.2228 31 1 3.2653 -5.4792 -0.2852 32 1 3.4238 -5.0346 2.1853 33 1 0.3891 -4.7929 1.9801 34 1 1.3611 -4.7222 3.4696 35 1 1.4967 -3.4272 2.2560 36 1 3.0030 -7.3185 1.3161 37 1 2.1615 -7.0584 2.8625 38 1 1.2515 -7.0024 1.3337 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700879513.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:22 Heat of formation + Delta-G solvation = 0.475043 kcal Electronic energy + Delta-G solvation = -21328.701678 eV Core-core repulsion = 18173.904165 eV Total energy + Delta-G solvation = -3154.797513 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -45.81665 -40.90222 -37.66727 -35.90794 -35.43940 -34.22313 -33.05285 -29.42573 -29.36505 -28.01852 -27.23527 -25.23988 -24.17785 -23.03119 -21.34296 -20.59830 -18.94253 -18.65357 -18.13205 -17.44284 -16.82692 -16.39236 -16.17750 -15.56617 -15.22410 -14.63741 -14.42604 -14.35882 -14.14598 -14.01434 -13.73096 -13.48729 -13.26705 -13.05569 -12.83604 -12.72193 -12.58556 -12.30056 -12.15829 -12.03107 -11.83429 -11.62806 -11.52287 -11.28975 -11.10942 -10.56817 -10.37336 -9.49581 -8.18474 -6.30654 -0.09115 1.21921 1.37349 1.39630 1.47945 1.80738 2.05773 2.33336 2.47641 3.13866 3.35972 3.55387 3.79835 3.95304 4.05387 4.16053 4.19709 4.37480 4.64132 4.68447 4.80035 4.80956 4.86725 4.89703 4.92187 5.00116 5.03346 5.07860 5.23804 5.27494 5.35440 5.43090 5.47321 5.63729 5.77865 6.05542 6.36903 6.74942 7.02038 7.28154 7.39232 8.88161 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.012878 B = 0.009741 C = 0.006238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2173.753496 B = 2873.802360 C = 4487.778118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.138 4.138 3 C -0.011 4.011 4 N -0.388 5.388 5 O 0.125 5.875 6 C -0.104 4.104 7 C 0.598 3.402 8 O -0.549 6.549 9 N -0.582 5.582 10 C 0.249 3.751 11 C -0.539 4.539 12 H 0.047 0.953 13 C 0.029 3.971 14 N -0.913 5.913 15 Si 0.947 3.053 16 H -0.283 1.283 17 H -0.276 1.276 18 H -0.268 1.268 19 C 0.118 3.882 20 C -0.109 4.109 21 C -0.131 4.131 22 C -0.134 4.134 23 H 0.088 0.912 24 H 0.102 0.898 25 H 0.071 0.929 26 H 0.236 0.764 27 H 0.032 0.968 28 H 0.031 0.969 29 H 0.266 0.734 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.065 0.935 35 H 0.025 0.975 36 H 0.059 0.941 37 H 0.069 0.931 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.383 -0.418 3.796 12.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.143 4.143 3 C -0.189 4.189 4 N -0.090 5.090 5 O 0.056 5.944 6 C -0.169 4.169 7 C 0.385 3.615 8 O -0.430 6.430 9 N -0.310 5.310 10 C 0.128 3.872 11 C -0.577 4.577 12 H 0.065 0.935 13 C -0.172 4.172 14 N -0.552 5.552 15 Si 0.772 3.228 16 H -0.209 1.209 17 H -0.201 1.201 18 H -0.192 1.192 19 C -0.004 4.004 20 C -0.129 4.129 21 C -0.189 4.189 22 C -0.192 4.192 23 H 0.107 0.893 24 H 0.121 0.879 25 H 0.090 0.910 26 H 0.252 0.748 27 H 0.049 0.951 28 H 0.049 0.951 29 H 0.075 0.925 30 H 0.101 0.899 31 H 0.096 0.904 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.044 0.956 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.552 -0.028 3.782 11.209 hybrid contribution 0.325 0.228 -0.928 1.009 sum -10.227 0.200 2.854 10.620 Atomic orbital electron populations 1.20335 0.84342 1.04507 1.03940 1.22077 1.00158 0.89631 1.02384 1.25587 0.86789 1.03298 1.03182 1.73781 1.25128 0.92905 1.17209 1.85484 1.27951 1.14582 1.66416 1.24329 0.85256 0.97026 1.10333 1.16669 0.85176 0.82335 0.77325 1.90690 1.17648 1.81117 1.53527 1.48154 1.07960 1.06977 1.67948 1.19265 0.75246 0.95965 0.96679 1.21484 0.95766 1.48013 0.92466 0.93456 1.25505 0.96832 0.94535 1.00332 1.69990 1.06163 1.47256 1.31788 0.85732 0.77923 0.78216 0.80893 1.20943 1.20097 1.19216 1.21707 1.01519 0.79790 0.97424 1.21480 0.99215 0.97527 0.94671 1.21696 0.98221 0.98619 1.00336 1.21694 1.02189 0.92549 1.02732 0.89329 0.87940 0.90969 0.74780 0.95059 0.95118 0.92484 0.89915 0.90388 0.92214 0.92259 0.91576 0.95615 0.92161 0.91160 0.91750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.85 10.02 71.24 0.71 -1.13 16 2 C -0.14 -4.60 6.36 -19.45 -0.12 -4.72 16 3 C -0.01 -0.36 12.14 85.69 1.04 0.68 16 4 N -0.39 -16.41 12.04 -58.56 -0.71 -17.12 16 5 O 0.12 5.87 7.40 65.86 0.49 6.36 16 6 C -0.10 -4.35 6.88 24.39 0.17 -4.19 16 7 C 0.60 25.37 6.10 86.69 0.53 25.90 16 8 O -0.55 -22.66 13.83 -3.97 -0.05 -22.72 16 9 N -0.58 -24.77 2.27 -829.96 -1.88 -26.66 16 10 C 0.25 12.36 4.79 85.63 0.41 12.77 16 11 C -0.54 -29.12 8.57 25.60 0.22 -28.91 16 12 H 0.05 2.61 7.81 -2.91 -0.02 2.59 16 13 C 0.03 1.58 5.46 84.66 0.46 2.04 16 14 N -0.91 -52.22 13.29 21.45 0.28 -51.94 16 15 Si 0.95 43.89 29.54 68.60 2.03 45.92 16 16 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 17 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 18 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 19 C 0.12 4.14 4.94 86.38 0.43 4.56 16 20 C -0.11 -3.23 3.12 -10.79 -0.03 -3.27 16 21 C -0.13 -3.81 8.54 71.98 0.61 -3.19 16 22 C -0.13 -2.98 9.19 71.98 0.66 -2.32 16 23 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 24 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 25 H 0.07 2.07 6.64 -2.38 -0.02 2.05 16 26 H 0.24 4.85 8.06 -2.91 -0.02 4.83 16 27 H 0.03 1.70 5.39 -2.39 -0.01 1.69 16 28 H 0.03 1.58 8.02 -2.39 -0.02 1.56 16 29 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 30 H 0.08 2.84 7.21 -2.38 -0.02 2.83 16 31 H 0.08 2.74 8.11 -2.39 -0.02 2.72 16 32 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 34 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.02 0.86 6.22 -2.39 -0.01 0.85 16 36 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -64.14 316.68 6.29 -57.85 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: 1.05 Total: 10.08 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: 5.09 Total: -1.78 kcal Atomic # 7 Polarization: -93.41 SS G_CDS: -2.30 Total: -95.71 kcal Atomic # 8 Polarization: -16.79 SS G_CDS: 0.43 Total: -16.36 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -64.14 6.29 -57.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700879513.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.325 kcal (2) G-P(sol) polarization free energy of solvation -64.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds