Wall clock time and date at job start Mon Mar 30 2020 04:35:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47266 * 240.00644 * 3 2 1 5 5 H 1.48504 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47383 * 120.00051 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 N 1.46499 * 109.47260 * 180.27562 * 9 7 2 11 11 C 1.34775 * 120.00180 * 180.02562 * 10 9 7 12 12 O 1.21273 * 120.00002 * 0.02562 * 11 10 9 13 13 C 1.50703 * 120.00072 * 180.02562 * 11 10 9 14 14 H 1.09004 * 109.87052 * 300.44085 * 13 11 10 15 15 C 1.54324 * 109.88642 * 61.45185 * 13 11 10 16 16 C 1.55150 * 102.94334 * 141.61014 * 15 13 11 17 17 C 1.54907 * 101.58499 * 324.50362 * 16 15 13 18 18 N 1.47020 * 109.88227 * 179.26416 * 13 11 10 19 19 C 1.34774 * 125.64876 * 61.61721 * 18 13 11 20 20 O 1.21279 * 120.00232 * 0.02562 * 19 18 13 21 21 C 1.50699 * 120.00036 * 179.97438 * 19 18 13 22 22 C 1.53004 * 117.50368 * 248.62541 * 21 19 18 23 23 C 1.53000 * 117.50147 * 180.02562 * 21 19 18 24 24 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 26 26 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 27 27 H 0.97002 * 119.99779 * 0.02562 * 10 9 7 28 28 H 1.08998 * 110.72152 * 259.97879 * 15 13 11 29 29 H 1.09007 * 110.71443 * 23.06993 * 15 13 11 30 30 H 1.09000 * 111.00182 * 82.57421 * 16 15 13 31 31 H 1.08994 * 111.00632 * 206.42507 * 16 15 13 32 32 H 1.08992 * 110.37271 * 155.84719 * 17 16 15 33 33 H 1.09003 * 110.36547 * 278.17191 * 17 16 15 34 34 H 1.09000 * 115.54730 * 34.33329 * 21 19 18 35 35 H 1.08996 * 117.49314 * 0.02562 * 22 21 19 36 36 H 1.08995 * 117.49539 * 145.02103 * 22 21 19 37 37 H 1.08995 * 117.49809 * 214.98643 * 23 21 19 38 38 H 1.09001 * 117.49697 * 359.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 7 2.2032 -3.6125 0.0102 11 6 1.7540 -4.8832 0.0154 12 8 0.5617 -5.1049 0.0156 13 6 2.7333 -6.0286 0.0209 14 1 3.3694 -5.9765 -0.8627 15 6 3.6008 -5.9714 1.2960 16 6 3.7470 -7.4665 1.6842 17 6 2.3623 -8.0300 1.2786 18 7 2.0075 -7.3070 0.0437 19 6 1.1582 -7.7451 -0.9066 20 8 0.9398 -7.0635 -1.8857 21 6 0.4808 -9.0825 -0.7532 22 6 0.8930 -10.1979 -1.7160 23 6 -0.4717 -9.5238 -1.8664 24 1 -0.4850 0.8400 0.0004 25 1 0.6245 -2.5529 0.8956 26 1 0.6244 -2.5609 -0.8844 27 1 3.1568 -3.4352 0.0096 28 1 4.5747 -5.5319 1.0805 29 1 3.0932 -5.4136 2.0830 30 1 4.5447 -7.9420 1.1136 31 1 3.9154 -7.5773 2.7553 32 1 2.4302 -9.1005 1.0852 33 1 1.6281 -7.8305 2.0591 34 1 0.2277 -9.3668 0.2681 35 1 1.6546 -9.9644 -2.4600 36 1 0.9113 -11.2163 -1.3280 37 1 -1.3515 -10.0985 -1.5774 38 1 -0.6086 -8.8466 -2.7094 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701243729.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:29 Heat of formation + Delta-G solvation = -46.749286 kcal Electronic energy + Delta-G solvation = -20406.564503 eV Core-core repulsion = 17249.719190 eV Total energy + Delta-G solvation = -3156.845313 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.42818 -38.60924 -37.11756 -35.84680 -34.10715 -32.38169 -31.52960 -29.76063 -26.97491 -25.19524 -23.39943 -22.53504 -22.16722 -21.43583 -19.79864 -18.80117 -17.67465 -17.13346 -16.36076 -15.59758 -15.13014 -14.99377 -14.71222 -14.40119 -14.12240 -13.80341 -13.33144 -13.17029 -12.94684 -12.47965 -12.13521 -12.02606 -11.83476 -11.64224 -11.42777 -11.36768 -10.98535 -10.95479 -10.81485 -10.69394 -10.52991 -10.28008 -9.62159 -9.36632 -9.22608 -8.68702 -8.35819 -7.80424 -6.12300 -4.19434 2.65496 2.98154 3.27522 3.32120 3.33808 3.42658 3.81499 4.14555 4.35260 4.39982 4.45714 4.70111 4.70948 4.81365 4.85977 5.11404 5.17807 5.23278 5.28172 5.41656 5.44326 5.60043 5.62653 5.70914 5.74415 5.80282 5.84231 6.05500 6.07388 6.33869 7.36657 7.50845 7.58433 7.63711 7.71593 8.01841 8.41553 8.68879 8.83495 9.18103 9.47139 10.97937 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.028945 B = 0.004389 C = 0.003965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.123101 B = 6378.448326 C = 7060.401364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.543 4.543 8 H 0.062 0.938 9 C 0.252 3.748 10 N -0.712 5.712 11 C 0.492 3.508 12 O -0.536 6.536 13 C 0.117 3.883 14 H 0.095 0.905 15 C -0.124 4.124 16 C -0.130 4.130 17 C 0.101 3.899 18 N -0.600 5.600 19 C 0.564 3.436 20 O -0.520 6.520 21 C -0.185 4.185 22 C -0.156 4.156 23 C -0.147 4.147 24 H 0.266 0.734 25 H 0.025 0.975 26 H 0.026 0.974 27 H 0.389 0.611 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.121 0.879 35 H 0.098 0.902 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.260 -20.088 3.242 21.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.581 4.581 8 H 0.080 0.920 9 C 0.132 3.868 10 N -0.361 5.361 11 C 0.274 3.726 12 O -0.413 6.413 13 C 0.009 3.991 14 H 0.113 0.887 15 C -0.162 4.162 16 C -0.168 4.168 17 C -0.022 4.022 18 N -0.335 5.335 19 C 0.352 3.648 20 O -0.395 6.395 21 C -0.206 4.206 22 C -0.193 4.193 23 C -0.185 4.185 24 H 0.076 0.924 25 H 0.043 0.957 26 H 0.044 0.956 27 H 0.221 0.779 28 H 0.109 0.891 29 H 0.103 0.897 30 H 0.097 0.903 31 H 0.105 0.895 32 H 0.097 0.903 33 H 0.087 0.913 34 H 0.139 0.861 35 H 0.116 0.884 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 7.011 -19.750 2.631 21.122 hybrid contribution 0.816 1.141 0.174 1.413 sum 7.826 -18.609 2.805 20.381 Atomic orbital electron populations 1.69971 1.06129 1.27359 1.48847 1.24954 0.94899 0.99422 0.94743 0.86475 0.79405 0.82352 0.78655 1.20056 1.21087 1.20086 1.21189 0.93195 0.90468 1.53253 0.91954 1.19068 0.88285 0.81866 0.97623 1.46380 1.10927 1.05900 1.72922 1.20564 0.89668 0.84389 0.77931 1.90663 1.16570 1.84522 1.49580 1.21551 0.92879 0.84305 1.00325 0.88707 1.22651 0.99995 0.97416 0.96118 1.22771 0.96571 0.95310 1.02170 1.22330 0.96391 0.96705 0.86807 1.48021 1.45479 1.18394 1.21576 1.19151 0.77599 0.86315 0.81692 1.90728 1.61131 1.57214 1.30426 1.22114 1.06260 0.94107 0.98096 1.22916 0.99453 0.95920 1.01006 1.22942 0.93258 1.02431 0.99830 0.92421 0.95724 0.95642 0.77908 0.89058 0.89660 0.90318 0.89490 0.90277 0.91277 0.86133 0.88385 0.87974 0.87982 0.87330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.80 13.29 55.43 0.74 -26.07 16 2 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 3 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 7 C -0.54 -15.11 9.28 -34.44 -0.32 -15.43 16 8 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 9 C 0.25 7.00 5.43 -5.19 -0.03 6.97 16 10 N -0.71 -15.78 5.48 -61.47 -0.34 -16.12 16 11 C 0.49 10.67 6.68 -10.98 -0.07 10.59 16 12 O -0.54 -14.20 15.03 -8.87 -0.13 -14.33 16 13 C 0.12 1.84 3.26 -68.10 -0.22 1.62 16 14 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 15 C -0.12 -1.36 6.38 -24.90 -0.16 -1.52 16 16 C -0.13 -1.06 7.08 -24.59 -0.17 -1.23 16 17 C 0.10 1.02 6.48 -2.53 -0.02 1.01 16 18 N -0.60 -9.06 2.84 -164.32 -0.47 -9.53 16 19 C 0.56 9.69 6.79 -10.99 -0.07 9.61 16 20 O -0.52 -11.46 15.52 -8.88 -0.14 -11.60 16 21 C -0.18 -2.29 5.26 -91.77 -0.48 -2.77 16 22 C -0.16 -1.49 10.23 -26.75 -0.27 -1.76 16 23 C -0.15 -1.69 10.04 -26.75 -0.27 -1.95 16 24 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 25 H 0.02 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.39 7.26 8.29 -40.82 -0.34 6.92 16 28 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.08 1.05 7.84 -51.93 -0.41 0.64 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.61 7.67 -51.93 -0.40 0.21 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.12 1.24 7.78 -51.93 -0.40 0.84 16 35 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.11 1.48 7.67 -51.93 -0.40 1.09 16 LS Contribution 321.93 15.07 4.85 4.85 Total: -1.00 -37.33 321.93 -8.40 -45.73 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -5.71 Total: 4.04 kcal Atomic # 6 Polarization: 9.03 SS G_CDS: -2.19 Total: 6.84 kcal Atomic # 7 Polarization: -51.64 SS G_CDS: -0.07 Total: -51.71 kcal Atomic # 8 Polarization: -25.66 SS G_CDS: -0.27 Total: -25.93 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -37.33 -8.40 -45.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701243729.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.019 kcal (2) G-P(sol) polarization free energy of solvation -37.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds