Wall clock time and date at job start Mon Mar 30 2020 04:35:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47266 * 240.00644 * 3 2 1 5 5 H 1.48504 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47383 * 120.00051 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 N 1.46499 * 109.47260 * 180.27562 * 9 7 2 11 11 C 1.34775 * 120.00180 * 180.02562 * 10 9 7 12 12 O 1.21273 * 120.00002 * 0.02562 * 11 10 9 13 13 C 1.50703 * 120.00072 * 180.02562 * 11 10 9 14 14 H 1.09004 * 109.87052 * 300.44085 * 13 11 10 15 15 C 1.54324 * 109.88642 * 61.45185 * 13 11 10 16 16 C 1.55150 * 102.94334 * 141.61014 * 15 13 11 17 17 C 1.54907 * 101.58499 * 324.50362 * 16 15 13 18 18 N 1.47020 * 109.88227 * 179.26416 * 13 11 10 19 19 C 1.34774 * 125.64876 * 61.61721 * 18 13 11 20 20 O 1.21279 * 120.00232 * 0.02562 * 19 18 13 21 21 C 1.50699 * 120.00036 * 179.97438 * 19 18 13 22 22 C 1.53004 * 117.50368 * 248.62541 * 21 19 18 23 23 C 1.53000 * 117.50147 * 180.02562 * 21 19 18 24 24 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 26 26 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 27 27 H 0.97002 * 119.99779 * 0.02562 * 10 9 7 28 28 H 1.08998 * 110.72152 * 259.97879 * 15 13 11 29 29 H 1.09007 * 110.71443 * 23.06993 * 15 13 11 30 30 H 1.09000 * 111.00182 * 82.57421 * 16 15 13 31 31 H 1.08994 * 111.00632 * 206.42507 * 16 15 13 32 32 H 1.08992 * 110.37271 * 155.84719 * 17 16 15 33 33 H 1.09003 * 110.36547 * 278.17191 * 17 16 15 34 34 H 1.09000 * 115.54730 * 34.33329 * 21 19 18 35 35 H 1.08996 * 117.49314 * 0.02562 * 22 21 19 36 36 H 1.08995 * 117.49539 * 145.02103 * 22 21 19 37 37 H 1.08995 * 117.49809 * 214.98643 * 23 21 19 38 38 H 1.09001 * 117.49697 * 359.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 7 2.2032 -3.6125 0.0102 11 6 1.7540 -4.8832 0.0154 12 8 0.5617 -5.1049 0.0156 13 6 2.7333 -6.0286 0.0209 14 1 3.3694 -5.9765 -0.8627 15 6 3.6008 -5.9714 1.2960 16 6 3.7470 -7.4665 1.6842 17 6 2.3623 -8.0300 1.2786 18 7 2.0075 -7.3070 0.0437 19 6 1.1582 -7.7451 -0.9066 20 8 0.9398 -7.0635 -1.8857 21 6 0.4808 -9.0825 -0.7532 22 6 0.8930 -10.1979 -1.7160 23 6 -0.4717 -9.5238 -1.8664 24 1 -0.4850 0.8400 0.0004 25 1 0.6245 -2.5529 0.8956 26 1 0.6244 -2.5609 -0.8844 27 1 3.1568 -3.4352 0.0096 28 1 4.5747 -5.5319 1.0805 29 1 3.0932 -5.4136 2.0830 30 1 4.5447 -7.9420 1.1136 31 1 3.9154 -7.5773 2.7553 32 1 2.4302 -9.1005 1.0852 33 1 1.6281 -7.8305 2.0591 34 1 0.2277 -9.3668 0.2681 35 1 1.6546 -9.9644 -2.4600 36 1 0.9113 -11.2163 -1.3280 37 1 -1.3515 -10.0985 -1.5774 38 1 -0.6086 -8.8466 -2.7094 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701243729.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:29 Heat of formation + Delta-G solvation = -74.428122 kcal Electronic energy + Delta-G solvation = -20407.764747 eV Core-core repulsion = 17249.719190 eV Total energy + Delta-G solvation = -3158.045558 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.72763 -40.12327 -38.38723 -36.94180 -36.17875 -34.44136 -32.65946 -31.04638 -28.94975 -26.24804 -25.16176 -23.57837 -23.31667 -22.56067 -21.35501 -20.14610 -19.09877 -18.44443 -17.98542 -17.22738 -16.82178 -16.31076 -16.08147 -15.99345 -15.62189 -15.04458 -14.63593 -14.32999 -14.23071 -14.04097 -13.87300 -13.60962 -13.15482 -12.93748 -12.75833 -12.64883 -12.46830 -12.25889 -12.15424 -11.77374 -11.57157 -11.55503 -11.43542 -10.92825 -10.87060 -10.82179 -9.89605 -9.70132 -8.31663 -6.50012 1.40336 1.44149 1.46274 1.54567 1.70213 1.88599 2.31694 2.57592 2.90877 3.02655 3.40150 3.55380 3.74019 3.80517 3.88621 3.97146 4.13090 4.20878 4.23533 4.53709 4.70563 4.74331 4.79759 4.87536 4.90832 5.00109 5.03354 5.09271 5.16239 5.20266 5.26185 5.33723 5.44083 5.65040 5.79962 6.48480 6.60510 6.84222 7.17211 7.20492 7.45104 8.80803 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.028945 B = 0.004389 C = 0.003965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.123101 B = 6378.448326 C = 7060.401364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.001 3.999 3 Si 0.990 3.010 4 H -0.262 1.262 5 H -0.285 1.285 6 H -0.257 1.257 7 C -0.557 4.557 8 H 0.088 0.912 9 C 0.271 3.729 10 N -0.704 5.704 11 C 0.483 3.517 12 O -0.593 6.593 13 C 0.119 3.881 14 H 0.103 0.897 15 C -0.118 4.118 16 C -0.113 4.113 17 C 0.090 3.910 18 N -0.604 5.604 19 C 0.547 3.453 20 O -0.589 6.589 21 C -0.198 4.198 22 C -0.120 4.120 23 C -0.163 4.163 24 H 0.269 0.731 25 H -0.014 1.014 26 H -0.026 1.026 27 H 0.409 0.591 28 H 0.122 0.878 29 H 0.069 0.931 30 H 0.101 0.899 31 H 0.116 0.884 32 H 0.113 0.887 33 H 0.064 0.936 34 H 0.147 0.853 35 H 0.089 0.911 36 H 0.145 0.855 37 H 0.129 0.871 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.595 -21.726 4.753 25.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.813 3.187 4 H -0.187 1.187 5 H -0.211 1.211 6 H -0.181 1.181 7 C -0.595 4.595 8 H 0.106 0.894 9 C 0.148 3.852 10 N -0.355 5.355 11 C 0.269 3.731 12 O -0.473 6.473 13 C 0.011 3.989 14 H 0.121 0.879 15 C -0.157 4.157 16 C -0.150 4.150 17 C -0.031 4.031 18 N -0.336 5.336 19 C 0.338 3.662 20 O -0.469 6.469 21 C -0.218 4.218 22 C -0.157 4.157 23 C -0.201 4.201 24 H 0.078 0.922 25 H 0.004 0.996 26 H -0.008 1.008 27 H 0.244 0.756 28 H 0.140 0.860 29 H 0.088 0.912 30 H 0.120 0.880 31 H 0.134 0.866 32 H 0.131 0.869 33 H 0.082 0.918 34 H 0.165 0.835 35 H 0.107 0.893 36 H 0.162 0.838 37 H 0.147 0.853 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 10.423 -21.441 4.191 24.206 hybrid contribution -0.295 1.607 -0.308 1.663 sum 10.128 -19.833 3.883 22.606 Atomic orbital electron populations 1.70158 1.08524 1.28722 1.49834 1.26163 0.95792 1.04205 0.93637 0.85131 0.77844 0.76090 0.79674 1.18689 1.21080 1.18091 1.21582 0.94389 0.90298 1.53193 0.89443 1.18480 0.88686 0.84625 0.93429 1.46106 1.11081 1.05234 1.73060 1.21833 0.90179 0.85406 0.75664 1.90627 1.19569 1.85403 1.51708 1.21675 0.91609 0.82138 1.03431 0.87909 1.22740 0.99907 1.00159 0.92857 1.22823 0.95657 0.92255 1.04314 1.22730 0.97595 0.98331 0.84474 1.48319 1.44557 1.18156 1.22617 1.20152 0.77389 0.87625 0.81081 1.90685 1.63451 1.59453 1.33261 1.22186 1.07131 0.92637 0.99886 1.23049 0.97189 0.96652 0.98820 1.23008 0.95588 1.02857 0.98626 0.92217 0.99616 1.00828 0.75557 0.85991 0.91225 0.88014 0.86565 0.86865 0.91803 0.83547 0.89269 0.83755 0.85305 0.90833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.71 13.29 21.45 0.28 -58.43 16 2 C 0.00 0.08 5.46 84.65 0.46 0.54 16 3 Si 0.99 43.33 29.54 68.60 2.03 45.36 16 4 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 5 H -0.29 -12.39 7.11 99.48 0.71 -11.68 16 6 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 7 C -0.56 -31.61 9.28 25.60 0.24 -31.37 16 8 H 0.09 4.41 7.60 -2.91 -0.02 4.39 16 9 C 0.27 16.01 5.43 85.63 0.46 16.48 16 10 N -0.70 -32.54 5.48 -466.79 -2.56 -35.09 16 11 C 0.48 22.01 6.68 87.66 0.59 22.60 16 12 O -0.59 -33.73 15.03 10.79 0.16 -33.57 16 13 C 0.12 3.72 3.26 44.60 0.15 3.86 16 14 H 0.10 3.05 8.14 -2.38 -0.02 3.03 16 15 C -0.12 -2.31 6.38 31.78 0.20 -2.10 16 16 C -0.11 -1.33 7.08 31.98 0.23 -1.10 16 17 C 0.09 1.56 6.48 86.85 0.56 2.12 16 18 N -0.60 -17.90 2.84 -792.19 -2.25 -20.16 16 19 C 0.55 19.27 6.79 87.66 0.60 19.87 16 20 O -0.59 -27.78 15.52 10.78 0.17 -27.61 16 21 C -0.20 -4.69 5.26 -11.54 -0.06 -4.75 16 22 C -0.12 -2.00 10.23 30.58 0.31 -1.69 16 23 C -0.16 -3.70 10.04 30.58 0.31 -3.40 16 24 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 25 H -0.01 -0.93 8.14 -2.39 -0.02 -0.95 16 26 H -0.03 -1.79 8.14 -2.38 -0.02 -1.81 16 27 H 0.41 15.29 8.29 -92.71 -0.77 14.52 16 28 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.07 1.61 7.84 -2.38 -0.02 1.59 16 30 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.11 1.23 7.67 -2.39 -0.02 1.21 16 33 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.15 2.65 7.78 -2.39 -0.02 2.63 16 35 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.14 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.13 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.07 2.19 7.67 -2.39 -0.02 2.17 16 Total: -1.00 -91.03 321.93 2.17 -88.87 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: 0.29 Total: 19.58 kcal Atomic # 6 Polarization: 17.01 SS G_CDS: 4.04 Total: 21.05 kcal Atomic # 7 Polarization: -109.15 SS G_CDS: -4.52 Total: -113.68 kcal Atomic # 8 Polarization: -61.51 SS G_CDS: 0.33 Total: -61.18 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -91.03 2.17 -88.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701243729.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.441 kcal (2) G-P(sol) polarization free energy of solvation -91.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds