Wall clock time and date at job start Mon Mar 30 2020 04:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47134 * 265.64933 * 3 2 1 5 5 C 1.37096 * 120.00495 * 270.00107 * 4 3 2 6 6 H 1.08003 * 119.99512 * 35.66282 * 5 4 3 7 7 C 1.38948 * 120.00302 * 215.66247 * 5 4 3 8 8 N 1.31415 * 119.99847 * 22.79796 * 7 5 4 9 9 Si 1.86794 * 120.00034 * 202.79378 * 7 5 4 10 10 H 1.48499 * 109.46950 * 90.00548 * 9 7 5 11 11 H 1.48507 * 109.47389 * 209.99947 * 9 7 5 12 12 H 1.48501 * 109.47365 * 330.00092 * 9 7 5 13 13 C 1.34775 * 119.99528 * 90.00678 * 4 3 2 14 14 O 1.21294 * 120.00031 * 184.99399 * 13 4 3 15 15 C 1.50699 * 120.00320 * 4.99891 * 13 4 3 16 16 C 1.52996 * 110.01128 * 78.07531 * 15 13 4 17 17 C 1.54316 * 109.89038 * 199.19424 * 15 13 4 18 18 C 1.55144 * 103.02065 * 97.11793 * 17 15 13 19 19 H 1.08995 * 110.98941 * 277.56245 * 18 17 15 20 20 O 1.42897 * 110.98911 * 153.78390 * 18 17 15 21 21 C 1.42902 * 114.00067 * 153.14382 * 20 18 17 22 22 C 1.54899 * 101.68569 * 35.67328 * 18 17 15 23 23 N 1.47450 * 109.88560 * 316.96008 * 15 13 4 24 24 H 4.40636 * 5.51484 * 179.97438 * 4 1 2 25 25 H 1.09012 * 109.46820 * 145.65545 * 3 2 1 26 26 H 1.09001 * 109.47659 * 25.65830 * 3 2 1 27 27 H 0.97000 * 119.99557 * 183.46694 * 8 7 5 28 28 H 1.09010 * 109.47259 * 181.11714 * 16 15 13 29 29 H 1.08998 * 109.47517 * 301.11540 * 16 15 13 30 30 H 1.08994 * 109.47500 * 61.12480 * 16 15 13 31 31 H 1.09003 * 110.70510 * 338.73428 * 17 15 13 32 32 H 1.09006 * 110.85664 * 215.57339 * 17 15 13 33 33 H 1.09003 * 109.47328 * 179.97438 * 21 20 18 34 34 H 1.08995 * 109.47180 * 300.00561 * 21 20 18 35 35 H 1.09004 * 109.46998 * 59.99676 * 21 20 18 36 36 H 1.09008 * 110.37748 * 81.74271 * 22 18 17 37 37 H 1.09004 * 110.37504 * 204.08343 * 22 18 17 38 38 H 1.00896 * 110.99577 * 117.34028 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1343 0.1057 1.3772 5 6 3.3622 1.3386 1.9317 6 1 2.7183 2.1695 1.6838 7 6 4.4216 1.5192 2.8125 8 7 5.4465 0.6972 2.7849 9 14 4.3889 2.9306 4.0357 10 1 3.7437 2.4795 5.2948 11 1 5.7783 3.3702 4.3215 12 1 3.6189 4.0641 3.4633 13 6 3.3595 -1.0099 2.0991 14 8 3.6764 -0.9231 3.2667 15 6 3.2177 -2.3653 1.4558 16 6 4.4514 -2.6725 0.6047 17 6 3.0471 -3.4472 2.5428 18 6 1.5093 -3.6429 2.6029 19 1 1.0429 -2.8812 3.2275 20 8 1.1778 -4.9537 3.0654 21 6 -0.0933 -5.0374 3.7131 22 6 1.1116 -3.4618 1.1168 23 7 2.0073 -2.3969 0.6143 24 1 -1.0500 0.0002 0.0000 25 1 3.0089 0.8494 -0.5799 26 1 3.0098 -0.9255 -0.4450 27 1 6.1622 0.7926 3.4326 28 1 4.3310 -3.6454 0.1280 29 1 4.5654 -1.9046 -0.1605 30 1 5.3369 -2.6866 1.2401 31 1 3.4285 -3.0943 3.5010 32 1 3.5423 -4.3731 2.2500 33 1 -0.2706 -6.0639 4.0342 34 1 -0.1029 -4.3781 4.5810 35 1 -0.8760 -4.7341 3.0178 36 1 1.2753 -4.3873 0.5646 37 1 0.0698 -3.1510 1.0379 38 1 2.2442 -2.5510 -0.3542 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701613043.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:04 Heat of formation + Delta-G solvation = 16.789272 kcal Electronic energy + Delta-G solvation = -21713.124072 eV Core-core repulsion = 18559.033997 eV Total energy + Delta-G solvation = -3154.090075 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.81939 -37.79800 -36.01916 -34.63438 -32.32044 -31.19301 -30.39678 -29.47260 -26.41505 -26.14512 -25.22885 -24.51262 -21.39101 -20.90647 -18.81160 -17.62778 -16.76190 -16.70717 -15.76341 -15.32963 -14.84398 -14.57229 -14.50831 -13.99239 -13.65955 -13.43355 -13.15268 -12.75278 -12.47526 -12.23657 -11.95146 -11.71630 -11.43811 -11.36704 -11.23086 -11.04376 -10.84782 -10.74316 -10.41687 -10.25465 -10.15344 -9.65827 -9.47455 -9.18793 -8.78154 -8.40334 -7.70274 -7.07705 -6.07633 -3.74361 3.37512 3.43688 3.46791 3.63777 3.75170 3.82048 4.23368 4.43525 4.69246 4.89061 5.01987 5.18791 5.28497 5.34493 5.41879 5.43177 5.45433 5.56987 5.68057 5.74979 5.84422 5.86011 6.08765 6.12964 6.18775 6.31266 6.44141 6.48382 6.58133 6.67241 6.81212 7.11270 7.36927 7.62328 7.68482 8.28928 8.55461 9.11470 9.25239 9.74267 10.38660 11.01266 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.019765 B = 0.007530 C = 0.006811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.298332 B = 3717.738560 C = 4109.846214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.264 4.264 2 C -0.122 4.122 3 C 0.219 3.781 4 N -0.439 5.439 5 C -0.347 4.347 6 H 0.079 0.921 7 C 0.071 3.929 8 N -0.826 5.826 9 Si 0.905 3.095 10 H -0.280 1.280 11 H -0.288 1.288 12 H -0.275 1.275 13 C 0.500 3.500 14 O -0.535 6.535 15 C 0.087 3.913 16 C -0.152 4.152 17 C -0.117 4.117 18 C 0.079 3.921 19 H 0.077 0.923 20 O -0.383 6.383 21 C 0.032 3.968 22 C 0.029 3.971 23 N -0.654 5.654 24 H 0.200 0.800 25 H 0.077 0.923 26 H 0.081 0.919 27 H 0.263 0.737 28 H 0.051 0.949 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.099 0.901 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.042 0.958 35 H 0.039 0.961 36 H 0.046 0.954 37 H 0.074 0.926 38 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.982 -8.849 -5.262 12.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.283 4.283 2 C -0.124 4.124 3 C 0.095 3.905 4 N -0.159 5.159 5 C -0.474 4.474 6 H 0.096 0.904 7 C -0.139 4.139 8 N -0.460 5.460 9 Si 0.733 3.267 10 H -0.206 1.206 11 H -0.215 1.215 12 H -0.200 1.200 13 C 0.286 3.714 14 O -0.412 6.412 15 C -0.006 4.006 16 C -0.211 4.211 17 C -0.155 4.155 18 C 0.021 3.979 19 H 0.095 0.905 20 O -0.301 6.301 21 C -0.065 4.065 22 C -0.101 4.101 23 N -0.287 5.287 24 H 0.217 0.783 25 H 0.095 0.905 26 H 0.099 0.901 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.117 0.883 32 H 0.091 0.909 33 H 0.100 0.900 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.065 0.935 37 H 0.093 0.907 38 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -6.776 -8.431 -4.293 11.637 hybrid contribution -0.046 -0.010 0.316 0.319 sum -6.821 -8.441 -3.978 11.559 Atomic orbital electron populations 1.24353 0.95410 1.05844 1.02678 1.23713 0.94787 0.95921 0.97969 1.18464 0.83613 1.00872 0.87531 1.43072 1.58896 1.05380 1.08588 1.19048 1.11749 0.87198 1.29355 0.90360 1.24991 0.93194 0.97214 0.98508 1.69907 1.06325 1.37482 1.32306 0.86313 0.76936 0.81353 0.82125 1.20570 1.21464 1.19965 1.19198 0.82156 0.83747 0.86294 1.90495 1.48923 1.85364 1.16464 1.21737 0.89730 0.96005 0.93170 1.22215 0.98313 1.00472 1.00053 1.22730 0.93891 0.97490 1.01413 1.23297 0.96460 0.84010 0.94145 0.90472 1.87854 1.36116 1.29529 1.76573 1.22752 0.85413 1.02082 0.96241 1.23216 0.98166 0.93315 0.95400 1.62514 1.14608 1.45985 1.05619 0.78338 0.90476 0.90140 0.92700 0.92987 0.91519 0.90867 0.88266 0.90852 0.89983 0.93959 0.94191 0.93516 0.90733 0.84391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -4.57 19.25 29.55 0.57 -4.00 16 2 C -0.12 -2.34 11.57 -37.12 -0.43 -2.77 16 3 C 0.22 4.39 5.36 -6.83 -0.04 4.35 16 4 N -0.44 -11.00 2.52 -117.93 -0.30 -11.30 16 5 C -0.35 -9.67 9.31 -14.93 -0.14 -9.81 16 6 H 0.08 2.15 7.93 -52.48 -0.42 1.73 16 7 C 0.07 2.02 4.24 -17.47 -0.07 1.94 16 8 N -0.83 -24.23 11.44 55.50 0.63 -23.60 16 9 Si 0.91 22.29 29.61 -169.99 -5.03 17.26 16 10 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 12 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 13 C 0.50 12.53 5.89 -10.99 -0.06 12.47 16 14 O -0.54 -15.70 12.85 5.55 0.07 -15.63 16 15 C 0.09 1.68 0.77 -131.76 -0.10 1.58 16 16 C -0.15 -2.58 8.01 37.16 0.30 -2.28 16 17 C -0.12 -2.16 5.67 -24.91 -0.14 -2.31 16 18 C 0.08 1.33 3.51 -24.60 -0.09 1.25 16 19 H 0.08 1.43 7.86 -51.93 -0.41 1.03 16 20 O -0.38 -5.95 10.51 -35.23 -0.37 -6.32 16 21 C 0.03 0.38 10.87 101.05 1.10 1.48 16 22 C 0.03 0.43 7.31 -2.25 -0.02 0.41 16 23 N -0.65 -10.75 3.02 -98.22 -0.30 -11.05 16 24 H 0.20 2.73 7.80 -54.09 -0.42 2.31 16 25 H 0.08 1.50 8.04 -51.92 -0.42 1.08 16 26 H 0.08 1.40 3.52 -51.93 -0.18 1.22 16 27 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 28 H 0.05 0.71 8.14 -51.92 -0.42 0.29 16 29 H 0.07 1.12 6.57 -51.93 -0.34 0.77 16 30 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 31 H 0.10 2.13 6.71 -51.93 -0.35 1.79 16 32 H 0.07 1.23 7.86 -51.93 -0.41 0.83 16 33 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.04 0.50 8.11 -51.93 -0.42 0.08 16 35 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.05 0.64 8.14 -51.92 -0.42 0.22 16 37 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.34 4.80 7.08 -39.29 -0.28 4.52 16 LS Contribution 311.69 15.07 4.70 4.70 Total: -1.00 -32.98 311.69 -5.04 -38.02 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -5.31 Total: 5.62 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: 0.88 Total: 2.30 kcal Atomic # 7 Polarization: -45.99 SS G_CDS: 0.04 Total: -45.95 kcal Atomic # 8 Polarization: -21.65 SS G_CDS: -0.30 Total: -21.95 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.03 Total: 17.26 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.98 -5.04 -38.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701613043.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.805 kcal (2) G-P(sol) polarization free energy of solvation -32.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds