Wall clock time and date at job start Mon Mar 30 2020 04:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47134 * 265.64933 * 3 2 1 5 5 C 1.37096 * 120.00495 * 270.00107 * 4 3 2 6 6 H 1.08003 * 119.99512 * 35.66282 * 5 4 3 7 7 C 1.38948 * 120.00302 * 215.66247 * 5 4 3 8 8 N 1.31415 * 119.99847 * 22.79796 * 7 5 4 9 9 Si 1.86794 * 120.00034 * 202.79378 * 7 5 4 10 10 H 1.48499 * 109.46950 * 90.00548 * 9 7 5 11 11 H 1.48507 * 109.47389 * 209.99947 * 9 7 5 12 12 H 1.48501 * 109.47365 * 330.00092 * 9 7 5 13 13 C 1.34775 * 119.99528 * 90.00678 * 4 3 2 14 14 O 1.21294 * 120.00031 * 184.99399 * 13 4 3 15 15 C 1.50699 * 120.00320 * 4.99891 * 13 4 3 16 16 C 1.52996 * 110.01128 * 78.07531 * 15 13 4 17 17 C 1.54316 * 109.89038 * 199.19424 * 15 13 4 18 18 C 1.55144 * 103.02065 * 97.11793 * 17 15 13 19 19 H 1.08995 * 110.98941 * 277.56245 * 18 17 15 20 20 O 1.42897 * 110.98911 * 153.78390 * 18 17 15 21 21 C 1.42902 * 114.00067 * 153.14382 * 20 18 17 22 22 C 1.54899 * 101.68569 * 35.67328 * 18 17 15 23 23 N 1.47450 * 109.88560 * 316.96008 * 15 13 4 24 24 H 4.40636 * 5.51484 * 179.97438 * 4 1 2 25 25 H 1.09012 * 109.46820 * 145.65545 * 3 2 1 26 26 H 1.09001 * 109.47659 * 25.65830 * 3 2 1 27 27 H 0.97000 * 119.99557 * 183.46694 * 8 7 5 28 28 H 1.09010 * 109.47259 * 181.11714 * 16 15 13 29 29 H 1.08998 * 109.47517 * 301.11540 * 16 15 13 30 30 H 1.08994 * 109.47500 * 61.12480 * 16 15 13 31 31 H 1.09003 * 110.70510 * 338.73428 * 17 15 13 32 32 H 1.09006 * 110.85664 * 215.57339 * 17 15 13 33 33 H 1.09003 * 109.47328 * 179.97438 * 21 20 18 34 34 H 1.08995 * 109.47180 * 300.00561 * 21 20 18 35 35 H 1.09004 * 109.46998 * 59.99676 * 21 20 18 36 36 H 1.09008 * 110.37748 * 81.74271 * 22 18 17 37 37 H 1.09004 * 110.37504 * 204.08343 * 22 18 17 38 38 H 1.00896 * 110.99577 * 117.34028 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1343 0.1057 1.3772 5 6 3.3622 1.3386 1.9317 6 1 2.7183 2.1695 1.6838 7 6 4.4216 1.5192 2.8125 8 7 5.4465 0.6972 2.7849 9 14 4.3889 2.9306 4.0357 10 1 3.7437 2.4795 5.2948 11 1 5.7783 3.3702 4.3215 12 1 3.6189 4.0641 3.4633 13 6 3.3595 -1.0099 2.0991 14 8 3.6764 -0.9231 3.2667 15 6 3.2177 -2.3653 1.4558 16 6 4.4514 -2.6725 0.6047 17 6 3.0471 -3.4472 2.5428 18 6 1.5093 -3.6429 2.6029 19 1 1.0429 -2.8812 3.2275 20 8 1.1778 -4.9537 3.0654 21 6 -0.0933 -5.0374 3.7131 22 6 1.1116 -3.4618 1.1168 23 7 2.0073 -2.3969 0.6143 24 1 -1.0500 0.0002 0.0000 25 1 3.0089 0.8494 -0.5799 26 1 3.0098 -0.9255 -0.4450 27 1 6.1622 0.7926 3.4326 28 1 4.3310 -3.6454 0.1280 29 1 4.5654 -1.9046 -0.1605 30 1 5.3369 -2.6866 1.2401 31 1 3.4285 -3.0943 3.5010 32 1 3.5423 -4.3731 2.2500 33 1 -0.2706 -6.0639 4.0342 34 1 -0.1029 -4.3781 4.5810 35 1 -0.8760 -4.7341 3.0178 36 1 1.2753 -4.3873 0.5646 37 1 0.0698 -3.1510 1.0379 38 1 2.2442 -2.5510 -0.3542 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701613043.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:04 Heat of formation + Delta-G solvation = -6.151070 kcal Electronic energy + Delta-G solvation = -21714.118839 eV Core-core repulsion = 18559.033997 eV Total energy + Delta-G solvation = -3155.084843 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.37972 -39.28128 -37.46686 -36.48117 -34.21771 -32.81181 -31.89079 -30.83402 -28.00889 -27.35343 -26.78171 -26.18898 -23.14555 -22.19387 -20.54688 -19.17263 -18.45575 -17.97362 -17.43233 -16.92233 -16.46211 -16.12892 -15.80965 -15.59321 -15.22071 -14.96105 -14.62639 -14.17626 -14.00003 -13.73723 -13.43424 -13.36846 -13.09701 -12.87707 -12.74212 -12.58506 -12.57548 -12.42283 -12.09795 -12.04818 -11.66396 -11.23019 -10.78277 -10.73763 -10.54539 -10.11968 -9.33924 -9.02776 -8.20188 -5.89245 1.37200 1.45220 1.49643 2.11039 2.32600 2.40288 2.51227 2.66356 3.17217 3.31266 3.38525 3.63956 3.81460 3.95890 4.02718 4.13671 4.32224 4.35925 4.50321 4.50531 4.60954 4.68307 4.78701 4.82769 4.85882 4.88759 4.93445 4.97325 5.16268 5.21179 5.44318 5.50198 5.75974 6.17577 6.19665 6.45290 7.05259 7.13708 7.27373 7.76276 8.44227 8.87974 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.019765 B = 0.007530 C = 0.006811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.298332 B = 3717.738560 C = 4109.846214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.166 4.166 3 C 0.220 3.780 4 N -0.454 5.454 5 C -0.364 4.364 6 H 0.075 0.925 7 C 0.024 3.976 8 N -0.856 5.856 9 Si 0.960 3.040 10 H -0.296 1.296 11 H -0.280 1.280 12 H -0.256 1.256 13 C 0.489 3.511 14 O -0.591 6.591 15 C 0.098 3.902 16 C -0.146 4.146 17 C -0.117 4.117 18 C 0.086 3.914 19 H 0.049 0.951 20 O -0.393 6.393 21 C 0.025 3.975 22 C 0.040 3.960 23 N -0.657 5.657 24 H 0.235 0.765 25 H 0.075 0.925 26 H 0.106 0.894 27 H 0.258 0.742 28 H 0.094 0.906 29 H 0.067 0.933 30 H 0.047 0.953 31 H 0.058 0.942 32 H 0.094 0.906 33 H 0.108 0.892 34 H 0.035 0.965 35 H 0.055 0.945 36 H 0.072 0.928 37 H 0.086 0.914 38 H 0.355 0.645 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.924 -10.025 -6.980 15.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.167 4.167 3 C 0.097 3.903 4 N -0.174 5.174 5 C -0.491 4.491 6 H 0.093 0.907 7 C -0.182 4.182 8 N -0.492 5.492 9 Si 0.786 3.214 10 H -0.223 1.223 11 H -0.206 1.206 12 H -0.180 1.180 13 C 0.277 3.723 14 O -0.472 6.472 15 C 0.004 3.996 16 C -0.204 4.204 17 C -0.156 4.156 18 C 0.027 3.973 19 H 0.068 0.932 20 O -0.311 6.311 21 C -0.071 4.071 22 C -0.089 4.089 23 N -0.292 5.292 24 H 0.251 0.749 25 H 0.093 0.907 26 H 0.123 0.877 27 H 0.067 0.933 28 H 0.113 0.887 29 H 0.086 0.914 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.112 0.888 33 H 0.126 0.874 34 H 0.054 0.946 35 H 0.074 0.926 36 H 0.090 0.910 37 H 0.104 0.896 38 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -8.742 -9.596 -6.070 14.330 hybrid contribution 0.420 0.316 0.847 0.997 sum -8.323 -9.280 -5.223 13.516 Atomic orbital electron populations 1.25163 0.96196 1.03677 1.00136 1.23599 0.94930 0.97989 1.00202 1.18535 0.84664 1.02149 0.84903 1.43323 1.58835 1.04637 1.10594 1.19269 1.11370 0.88448 1.30003 0.90749 1.25755 0.93083 0.99446 0.99963 1.69988 1.06878 1.39428 1.32859 0.85462 0.77305 0.79391 0.79281 1.22276 1.20573 1.18029 1.20248 0.80378 0.85802 0.85912 1.90450 1.51011 1.86719 1.19067 1.21412 0.91924 0.92397 0.93884 1.22172 0.96079 1.02832 0.99305 1.22654 0.95665 0.97911 0.99341 1.23079 0.94846 0.84107 0.95269 0.93246 1.87825 1.38065 1.28270 1.76974 1.22996 0.84260 1.03682 0.96200 1.23190 0.98146 0.93843 0.93765 1.62307 1.13404 1.47262 1.06221 0.74864 0.90670 0.87658 0.93300 0.88743 0.91413 0.93355 0.92296 0.88796 0.87409 0.94613 0.92643 0.90983 0.89565 0.82485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -7.31 19.25 74.32 1.43 -5.88 16 2 C -0.17 -6.02 11.57 31.12 0.36 -5.66 16 3 C 0.22 8.66 5.36 84.57 0.45 9.11 16 4 N -0.45 -23.08 2.52 -645.41 -1.63 -24.71 16 5 C -0.36 -20.73 9.31 84.04 0.78 -19.95 16 6 H 0.07 4.16 7.93 -2.91 -0.02 4.14 16 7 C 0.02 1.42 4.24 84.93 0.36 1.78 16 8 N -0.86 -52.12 11.44 21.66 0.25 -51.87 16 9 Si 0.96 46.93 29.61 68.60 2.03 48.97 16 10 H -0.30 -15.11 7.11 99.48 0.71 -14.40 16 11 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 12 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 13 C 0.49 25.07 5.89 87.66 0.52 25.58 16 14 O -0.59 -36.38 12.85 -3.07 -0.04 -36.42 16 15 C 0.10 3.70 0.77 3.12 0.00 3.70 16 16 C -0.15 -4.74 8.01 71.98 0.58 -4.16 16 17 C -0.12 -4.33 5.67 31.78 0.18 -4.15 16 18 C 0.09 2.79 3.51 31.98 0.11 2.90 16 19 H 0.05 1.86 7.86 -2.39 -0.02 1.84 16 20 O -0.39 -11.46 10.51 -148.98 -1.57 -13.03 16 21 C 0.02 0.53 10.87 113.37 1.23 1.76 16 22 C 0.04 1.06 7.31 86.75 0.63 1.69 16 23 N -0.66 -19.94 3.02 -464.65 -1.40 -21.35 16 24 H 0.23 5.31 7.80 -4.42 -0.03 5.28 16 25 H 0.08 2.91 8.04 -2.38 -0.02 2.90 16 26 H 0.11 3.50 3.52 -2.39 -0.01 3.49 16 27 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 28 H 0.09 2.27 8.14 -2.38 -0.02 2.25 16 29 H 0.07 2.17 6.57 -2.39 -0.02 2.15 16 30 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.06 2.67 6.71 -2.39 -0.02 2.65 16 32 H 0.09 3.03 7.86 -2.38 -0.02 3.01 16 33 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.04 0.81 8.11 -2.39 -0.02 0.79 16 35 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 36 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 37 H 0.09 2.15 8.14 -2.38 -0.02 2.13 16 38 H 0.35 8.75 7.08 -89.70 -0.63 8.11 16 Total: -1.00 -74.77 311.69 4.71 -70.07 By element: Atomic # 1 Polarization: 21.19 SS G_CDS: 0.43 Total: 21.61 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: 6.64 Total: 6.73 kcal Atomic # 7 Polarization: -95.14 SS G_CDS: -2.78 Total: -97.92 kcal Atomic # 8 Polarization: -47.84 SS G_CDS: -1.61 Total: -49.45 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 2.03 Total: 48.97 kcal Total: -74.77 4.71 -70.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701613043.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.915 kcal (2) G-P(sol) polarization free energy of solvation -74.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds