Wall clock time and date at job start Mon Mar 30 2020 04:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46900 * 262.31039 * 3 2 1 5 5 C 1.37098 * 119.99772 * 91.52890 * 4 3 2 6 6 H 1.08004 * 119.99660 * 165.25981 * 5 4 3 7 7 C 1.38953 * 120.00561 * 345.53402 * 5 4 3 8 8 N 1.31411 * 119.99347 * 334.11404 * 7 5 4 9 9 Si 1.86795 * 120.00223 * 154.10955 * 7 5 4 10 10 H 1.48499 * 109.46909 * 60.00515 * 9 7 5 11 11 H 1.48504 * 109.46926 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47434 * 300.00301 * 9 7 5 13 13 C 1.34773 * 119.99696 * 271.52253 * 4 3 2 14 14 O 1.21290 * 119.99403 * 180.02562 * 13 4 3 15 15 C 1.50693 * 120.00437 * 0.02562 * 13 4 3 16 16 C 1.53005 * 109.87603 * 276.03033 * 15 13 4 17 17 C 1.54312 * 109.89176 * 154.99965 * 15 13 4 18 18 C 1.55145 * 103.01900 * 262.87604 * 17 15 13 19 19 H 1.09005 * 110.99175 * 82.43648 * 18 17 15 20 20 O 1.42893 * 110.99307 * 206.21684 * 18 17 15 21 21 C 1.42904 * 114.00318 * 209.99805 * 20 18 17 22 22 C 1.54908 * 101.65072 * 324.34788 * 18 17 15 23 23 N 1.47444 * 109.88869 * 37.22431 * 15 13 4 24 24 H 4.40636 * 5.51421 * 179.97438 * 4 1 2 25 25 H 1.08993 * 109.47116 * 142.30514 * 3 2 1 26 26 H 1.09003 * 109.46773 * 22.30924 * 3 2 1 27 27 H 0.97006 * 119.99568 * 179.97438 * 8 7 5 28 28 H 1.08995 * 109.47131 * 59.29966 * 16 15 13 29 29 H 1.09006 * 109.46579 * 179.29802 * 16 15 13 30 30 H 1.08996 * 109.47188 * 299.29203 * 16 15 13 31 31 H 1.08998 * 110.70840 * 21.25830 * 17 15 13 32 32 H 1.09004 * 110.71127 * 144.49529 * 17 15 13 33 33 H 1.09001 * 109.46622 * 59.99777 * 21 20 18 34 34 H 1.08994 * 109.47522 * 179.97438 * 21 20 18 35 35 H 1.09000 * 109.47079 * 300.00637 * 21 20 18 36 36 H 1.09000 * 110.37243 * 155.89882 * 22 18 17 37 37 H 1.09005 * 110.37231 * 278.12413 * 22 18 17 38 38 H 1.00899 * 111.00520 * 242.66529 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1342 0.1857 1.3688 5 6 3.3931 -0.9054 2.1576 6 1 3.9688 -0.7918 3.0643 7 6 2.9196 -2.1583 1.7877 8 7 1.8518 -2.2591 1.0284 9 14 3.8009 -3.6990 2.3696 10 1 3.7997 -3.7391 3.8541 11 1 3.1024 -4.8982 1.8411 12 1 5.2014 -3.6846 1.8759 13 6 3.3290 1.4285 1.8525 14 8 3.7337 1.5816 2.9856 15 6 3.0441 2.6277 0.9856 16 6 4.2525 2.9249 0.0954 17 6 2.7300 3.8524 1.8704 18 6 1.1790 3.8749 1.8981 19 1 0.7917 3.1821 2.6453 20 8 0.6902 5.1977 2.1285 21 6 -0.5609 5.2434 2.8175 22 6 0.8335 3.3963 0.4659 23 7 1.8541 2.3735 0.1531 24 1 -1.0500 0.0002 -0.0001 25 1 3.0090 0.8139 -0.6283 26 1 3.0097 -0.9500 -0.3901 27 1 1.5215 -3.1338 0.7698 28 1 4.4647 2.0582 -0.5304 29 1 4.0347 3.7854 -0.5373 30 1 5.1189 3.1432 0.7198 31 1 3.1315 3.7156 2.8745 32 1 3.1206 4.7644 1.4190 33 1 -0.4571 4.7648 3.7912 34 1 -0.8630 6.2818 2.9538 35 1 -1.3167 4.7184 2.2333 36 1 -0.1637 2.9568 0.4429 37 1 0.8978 4.2266 -0.2375 38 1 2.0897 2.3860 -0.8280 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701613045.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:11 Heat of formation + Delta-G solvation = -2.979489 kcal Electronic energy + Delta-G solvation = -21675.879593 eV Core-core repulsion = 18520.932281 eV Total energy + Delta-G solvation = -3154.947312 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.48932 -39.34636 -37.49366 -37.04388 -33.82131 -32.81670 -31.97377 -30.79613 -28.06294 -27.38979 -26.86824 -26.25319 -23.20218 -22.20256 -20.13349 -19.51299 -18.33884 -18.05664 -17.70073 -16.98787 -16.41091 -16.11625 -15.84301 -15.68538 -15.33002 -14.97297 -14.59229 -14.24551 -14.05100 -13.76776 -13.52296 -13.35184 -13.15192 -12.83160 -12.79297 -12.56074 -12.51395 -12.35996 -12.14353 -12.06499 -11.69196 -11.08650 -10.85258 -10.60644 -10.38923 -10.07364 -9.74153 -9.15697 -8.23569 -5.82319 1.38581 1.43833 1.53330 1.97483 2.28982 2.52420 2.62506 2.86897 3.10249 3.26392 3.32908 3.62312 3.80323 3.97927 4.08603 4.22175 4.26402 4.33530 4.49666 4.51191 4.62678 4.69856 4.79481 4.86367 4.89718 4.90872 4.94893 5.08223 5.13806 5.20493 5.52613 5.72771 5.76816 6.11973 6.17344 6.46136 6.55213 7.22610 7.54055 7.63350 8.12641 8.69754 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.024745 B = 0.006775 C = 0.006404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.266868 B = 4132.134413 C = 4371.343484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.293 4.293 2 C -0.074 4.074 3 C 0.255 3.745 4 N -0.435 5.435 5 C -0.362 4.362 6 H 0.069 0.931 7 C 0.008 3.992 8 N -0.857 5.857 9 Si 0.976 3.024 10 H -0.282 1.282 11 H -0.273 1.273 12 H -0.267 1.267 13 C 0.453 3.547 14 O -0.641 6.641 15 C 0.100 3.900 16 C -0.151 4.151 17 C -0.114 4.114 18 C 0.083 3.917 19 H 0.045 0.955 20 O -0.389 6.389 21 C 0.025 3.975 22 C 0.042 3.958 23 N -0.659 5.659 24 H 0.211 0.789 25 H 0.097 0.903 26 H 0.067 0.933 27 H 0.271 0.729 28 H 0.070 0.930 29 H 0.098 0.902 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.103 0.897 33 H 0.035 0.965 34 H 0.110 0.890 35 H 0.050 0.950 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.356 0.644 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.906 10.513 -7.045 12.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.312 4.312 2 C -0.076 4.076 3 C 0.133 3.867 4 N -0.151 5.151 5 C -0.489 4.489 6 H 0.087 0.913 7 C -0.197 4.197 8 N -0.493 5.493 9 Si 0.800 3.200 10 H -0.208 1.208 11 H -0.197 1.197 12 H -0.192 1.192 13 C 0.242 3.758 14 O -0.529 6.529 15 C 0.006 3.994 16 C -0.210 4.210 17 C -0.153 4.153 18 C 0.024 3.976 19 H 0.063 0.937 20 O -0.307 6.307 21 C -0.071 4.071 22 C -0.087 4.087 23 N -0.294 5.294 24 H 0.228 0.772 25 H 0.114 0.886 26 H 0.085 0.915 27 H 0.081 0.919 28 H 0.089 0.911 29 H 0.116 0.884 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.121 0.879 33 H 0.054 0.946 34 H 0.128 0.872 35 H 0.069 0.931 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -2.993 10.057 -6.264 12.221 hybrid contribution 0.182 -0.651 0.547 0.870 sum -2.811 9.407 -5.716 11.361 Atomic orbital electron populations 1.24449 0.95758 1.08976 1.02044 1.22543 0.93862 0.93006 0.98196 1.18200 0.85521 1.00062 0.82956 1.43742 1.54928 1.04360 1.12044 1.19472 1.34493 0.86506 1.08471 0.91261 1.25876 0.95072 1.01084 0.97648 1.70258 1.17534 1.25537 1.35989 0.85282 0.79024 0.77547 0.78142 1.20807 1.19738 1.19240 1.20704 0.82802 0.84983 0.87331 1.90449 1.54087 1.86155 1.22200 1.21372 0.92704 0.91577 0.93781 1.22268 0.96185 1.03405 0.99124 1.22693 0.94614 0.97120 1.00869 1.23095 0.94166 0.83696 0.96613 0.93716 1.87809 1.38833 1.25968 1.78121 1.22994 0.84673 1.04117 0.95343 1.23100 0.96651 0.93540 0.95435 1.62289 1.08486 1.48663 1.09952 0.77237 0.88564 0.91540 0.91910 0.91089 0.88368 0.91891 0.91790 0.87874 0.94619 0.87152 0.93121 0.90485 0.90729 0.82322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -12.04 19.21 74.32 1.43 -10.61 16 2 C -0.07 -3.23 8.62 31.12 0.27 -2.96 16 3 C 0.25 11.13 4.75 84.57 0.40 11.53 16 4 N -0.44 -22.42 2.59 -645.42 -1.67 -24.09 16 5 C -0.36 -20.83 9.34 84.04 0.78 -20.05 16 6 H 0.07 4.34 7.38 -2.91 -0.02 4.32 16 7 C 0.01 0.43 4.79 84.93 0.41 0.83 16 8 N -0.86 -45.21 9.43 21.66 0.20 -45.01 16 9 Si 0.98 42.60 29.62 68.60 2.03 44.63 16 10 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 11 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 12 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 13 C 0.45 22.43 6.59 87.66 0.58 23.01 16 14 O -0.64 -37.30 15.19 -3.06 -0.05 -37.35 16 15 C 0.10 3.54 0.77 3.12 0.00 3.55 16 16 C -0.15 -4.15 8.03 71.98 0.58 -3.57 16 17 C -0.11 -3.92 5.69 31.77 0.18 -3.74 16 18 C 0.08 2.71 3.54 31.98 0.11 2.82 16 19 H 0.04 1.74 7.83 -2.38 -0.02 1.72 16 20 O -0.39 -11.22 10.51 -148.98 -1.57 -12.79 16 21 C 0.02 0.55 10.85 113.37 1.23 1.78 16 22 C 0.04 1.18 7.31 86.77 0.63 1.82 16 23 N -0.66 -20.79 2.37 -464.89 -1.10 -21.90 16 24 H 0.21 7.21 7.80 -4.42 -0.03 7.17 16 25 H 0.10 3.38 3.92 -2.39 -0.01 3.37 16 26 H 0.07 3.12 6.66 -2.39 -0.02 3.10 16 27 H 0.27 13.56 8.31 -92.70 -0.77 12.79 16 28 H 0.07 1.88 6.72 -2.39 -0.02 1.87 16 29 H 0.10 1.95 8.14 -2.38 -0.02 1.93 16 30 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.06 2.63 6.76 -2.39 -0.02 2.62 16 32 H 0.10 2.94 7.85 -2.38 -0.02 2.92 16 33 H 0.04 0.84 8.12 -2.39 -0.02 0.82 16 34 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 38 H 0.36 9.16 7.11 -89.69 -0.64 8.52 16 Total: -1.00 -70.36 307.84 4.88 -65.48 By element: Atomic # 1 Polarization: 26.21 SS G_CDS: 0.43 Total: 26.63 kcal Atomic # 6 Polarization: -2.20 SS G_CDS: 6.60 Total: 4.40 kcal Atomic # 7 Polarization: -88.43 SS G_CDS: -2.57 Total: -91.00 kcal Atomic # 8 Polarization: -48.53 SS G_CDS: -1.61 Total: -50.14 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -70.36 4.88 -65.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701613045.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.496 kcal (2) G-P(sol) polarization free energy of solvation -70.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds