Wall clock time and date at job start Mon Mar 30 2020 04:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52990 * 115.56335 * 2 1 4 4 C 1.53008 * 117.49557 * 214.30865 * 2 1 3 5 5 C 1.53000 * 59.99900 * 252.51163 * 4 2 1 6 6 C 1.53006 * 117.49497 * 107.49228 * 5 4 2 7 7 C 1.50701 * 117.49743 * 252.48351 * 5 4 2 8 8 N 1.29942 * 126.28519 * 68.77723 * 7 5 4 9 9 O 1.21306 * 110.25142 * 179.97438 * 8 7 5 10 10 C 1.33643 * 109.81013 * 0.02562 * 9 8 7 11 11 C 1.50701 * 126.55146 * 179.97438 * 10 9 8 12 12 C 1.53003 * 109.46691 * 269.97462 * 11 10 9 13 13 H 1.09000 * 109.47249 * 54.99903 * 12 11 10 14 14 O 1.42901 * 109.47159 * 294.99923 * 12 11 10 15 15 C 1.50696 * 109.46731 * 174.99916 * 12 11 10 16 16 H 1.08006 * 119.99993 * 0.02562 * 15 12 11 17 17 C 1.37874 * 120.00017 * 179.97438 * 15 12 11 18 18 N 1.31514 * 120.00075 * 0.02562 * 17 15 12 19 19 Si 1.86801 * 120.00145 * 180.02562 * 17 15 12 20 20 H 1.48505 * 109.47237 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47281 * 120.00117 * 19 17 15 22 22 H 1.48503 * 109.47095 * 239.99939 * 19 17 15 23 23 N 1.31134 * 106.89521 * 359.76399 * 10 9 8 24 24 H 1.08999 * 109.46826 * 274.31390 * 1 2 3 25 25 H 1.09003 * 109.46704 * 34.30712 * 1 2 3 26 26 H 1.08995 * 109.47437 * 154.31472 * 1 2 3 27 27 H 1.09007 * 109.47305 * 205.68601 * 3 2 1 28 28 H 1.09002 * 109.47481 * 325.68754 * 3 2 1 29 29 H 1.09001 * 109.47294 * 85.69127 * 3 2 1 30 30 H 1.08998 * 117.49499 * 145.02287 * 4 2 1 31 31 H 1.08998 * 117.51868 * 359.97438 * 4 2 1 32 32 H 1.09002 * 109.46876 * 111.38735 * 6 5 4 33 33 H 1.08998 * 109.46939 * 231.38745 * 6 5 4 34 34 H 1.08998 * 109.47133 * 351.38988 * 6 5 4 35 35 H 1.08996 * 109.46624 * 29.97007 * 11 10 9 36 36 H 1.08998 * 109.46950 * 149.97768 * 11 10 9 37 37 H 0.96707 * 113.99642 * 300.00342 * 14 12 11 38 38 H 0.97006 * 120.00220 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3801 0.0000 4 6 2.2364 -1.1211 -0.7650 5 6 2.2364 -1.1210 0.7650 6 6 1.3587 -2.1563 1.4714 7 6 3.5295 -0.7818 1.4608 8 7 4.1108 0.3802 1.4794 9 8 5.1360 0.3264 2.1257 10 6 5.3115 -0.9128 2.5945 11 6 6.4597 -1.3977 3.4414 12 6 7.5811 -1.9098 2.5352 13 1 7.8619 -1.1293 1.8280 14 8 7.1271 -3.0602 1.8193 15 6 8.7761 -2.2802 3.3752 16 1 8.7393 -2.1625 4.4482 17 6 9.9161 -2.7702 2.7741 18 7 9.9607 -2.9140 1.4676 19 14 11.3972 -3.2300 3.8155 20 1 11.0937 -2.9767 5.2470 21 1 11.7099 -4.6689 3.6234 22 1 12.5652 -2.4104 3.4040 23 7 4.2911 -1.6249 2.1804 24 1 -0.3633 0.0773 1.0248 25 1 -0.3633 0.8489 -0.5793 26 1 -0.3634 -0.9261 -0.4454 27 1 3.1825 1.3083 -0.4455 28 1 1.5813 2.0742 -0.5793 29 1 2.2773 1.7413 1.0248 30 1 3.1715 -0.8753 -1.2683 31 1 1.6115 -1.8590 -1.2680 32 1 1.9921 -2.8889 1.9716 33 1 0.7293 -1.6569 2.2080 34 1 0.7296 -2.6604 0.7379 35 1 6.8330 -0.5758 4.0523 36 1 6.1181 -2.2055 4.0885 37 1 6.8600 -3.7964 2.3866 38 1 10.7626 -3.2592 1.0448 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702179914.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:07 Heat of formation + Delta-G solvation = 31.453892 kcal Electronic energy + Delta-G solvation = -20429.165229 eV Core-core repulsion = 17275.711060 eV Total energy + Delta-G solvation = -3153.454169 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -45.01848 -39.24898 -36.32298 -34.94435 -32.51083 -32.17537 -30.61060 -29.43021 -28.06321 -26.96107 -25.75774 -24.17248 -22.52982 -21.18807 -20.40747 -18.47144 -17.51799 -17.11709 -16.48731 -15.40020 -14.72966 -14.65512 -14.39411 -14.23409 -14.00948 -13.40307 -13.22151 -12.84867 -12.67288 -12.62274 -12.21729 -12.13133 -11.88392 -11.64693 -11.44349 -11.24933 -11.16290 -11.05792 -10.91521 -10.80621 -10.47280 -10.21963 -10.08742 -9.63552 -9.38201 -9.02614 -8.67434 -8.26011 -6.09855 -4.30252 1.67938 2.66829 3.23460 3.31712 3.34248 3.42746 3.57813 3.87353 4.32500 4.40471 4.55338 4.72190 4.84581 4.98012 5.18054 5.43462 5.50395 5.54570 5.67155 5.72927 5.73932 5.79388 5.83383 5.86141 5.93297 5.98336 6.03677 6.07376 6.16202 6.25383 6.34575 6.41275 6.52968 6.62388 7.52033 7.72841 7.99801 8.70098 8.72321 9.29501 9.47657 10.94485 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.042774 B = 0.004077 C = 0.004019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.442523 B = 6865.968933 C = 6965.503397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.108 4.108 3 C -0.109 4.109 4 C -0.149 4.149 5 C -0.039 4.039 6 C -0.106 4.106 7 C 0.203 3.797 8 N -0.394 5.394 9 O 0.060 5.940 10 C 0.215 3.785 11 C -0.062 4.062 12 C 0.237 3.763 13 H 0.061 0.939 14 O -0.558 6.558 15 C -0.575 4.575 16 H 0.062 0.938 17 C 0.081 3.919 18 N -0.856 5.856 19 Si 0.894 3.106 20 H -0.271 1.271 21 H -0.282 1.282 22 H -0.282 1.282 23 N -0.482 5.482 24 H 0.060 0.940 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.096 0.904 31 H 0.105 0.895 32 H 0.075 0.925 33 H 0.059 0.941 34 H 0.064 0.936 35 H 0.098 0.902 36 H 0.100 0.900 37 H 0.349 0.651 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.084 4.318 -0.560 16.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.109 4.109 3 C -0.166 4.166 4 C -0.187 4.187 5 C -0.041 4.041 6 C -0.163 4.163 7 C -0.070 4.070 8 N -0.105 5.105 9 O 0.005 5.995 10 C -0.004 4.004 11 C -0.101 4.101 12 C 0.178 3.822 13 H 0.079 0.921 14 O -0.361 6.361 15 C -0.613 4.613 16 H 0.080 0.920 17 C -0.126 4.126 18 N -0.491 5.491 19 Si 0.721 3.279 20 H -0.195 1.195 21 H -0.208 1.208 22 H -0.208 1.208 23 N -0.215 5.215 24 H 0.079 0.921 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.115 0.885 31 H 0.123 0.877 32 H 0.094 0.906 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.116 0.884 36 H 0.118 0.882 37 H 0.193 0.807 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -16.396 5.001 -1.660 17.222 hybrid contribution 1.095 -0.627 1.074 1.657 sum -15.302 4.373 -0.586 15.925 Atomic orbital electron populations 1.21343 0.91460 1.02061 1.02010 1.21793 0.94903 0.91707 1.02470 1.21394 0.99871 0.92928 1.02417 1.23455 1.02671 1.00972 0.91616 1.19310 0.90498 1.01432 0.92861 1.21239 0.98167 0.97001 0.99938 1.24534 0.98028 0.85782 0.98609 1.74678 0.97912 1.22747 1.15205 1.85277 1.32101 1.33159 1.48938 1.29272 0.96339 0.79977 0.94832 1.21533 0.89755 1.01912 0.96923 1.19406 0.86824 0.86070 0.89924 0.92149 1.86603 1.86393 1.25478 1.37623 1.21564 0.98649 1.47327 0.93783 0.91952 1.25038 0.98430 0.94374 0.94798 1.70093 1.27946 1.42328 1.08744 0.86538 0.82537 0.78247 0.80596 1.19539 1.20830 1.20819 1.71813 1.04338 1.30387 1.14915 0.92063 0.91867 0.92167 0.91771 0.92646 0.91657 0.88532 0.87693 0.90584 0.92200 0.91671 0.88396 0.88176 0.80660 0.92829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 8.88 37.16 0.33 -0.68 16 2 C -0.11 -1.30 2.70 -154.51 -0.42 -1.72 16 3 C -0.11 -1.40 8.12 37.15 0.30 -1.09 16 4 C -0.15 -1.90 9.17 -26.73 -0.25 -2.15 16 5 C -0.04 -0.56 2.65 -155.66 -0.41 -0.97 16 6 C -0.11 -1.28 8.86 37.16 0.33 -0.95 16 7 C 0.20 3.66 7.31 -156.38 -1.14 2.52 16 8 N -0.39 -7.31 8.68 30.90 0.27 -7.04 16 9 O 0.06 1.16 11.31 18.10 0.20 1.36 16 10 C 0.22 4.19 7.54 -13.05 -0.10 4.09 16 11 C -0.06 -1.17 5.46 -27.88 -0.15 -1.32 16 12 C 0.24 5.70 2.81 -27.88 -0.08 5.63 16 13 H 0.06 1.63 8.14 -51.93 -0.42 1.20 16 14 O -0.56 -14.13 12.48 -35.23 -0.44 -14.57 16 15 C -0.58 -14.83 8.76 -34.44 -0.30 -15.13 16 16 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 17 C 0.08 2.17 5.40 -17.82 -0.10 2.07 16 18 N -0.86 -24.71 12.84 55.43 0.71 -23.99 16 19 Si 0.89 20.35 29.54 -169.99 -5.02 15.33 16 20 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 N -0.48 -9.43 11.20 -9.87 -0.11 -9.54 16 24 H 0.06 0.54 8.02 -51.93 -0.42 0.12 16 25 H 0.06 0.50 7.92 -51.93 -0.41 0.09 16 26 H 0.06 0.48 7.78 -51.93 -0.40 0.07 16 27 H 0.06 0.93 7.09 -51.92 -0.37 0.57 16 28 H 0.05 0.58 7.92 -51.93 -0.41 0.17 16 29 H 0.06 0.91 7.32 -51.93 -0.38 0.53 16 30 H 0.10 1.37 8.05 -51.93 -0.42 0.96 16 31 H 0.10 1.09 7.96 -51.93 -0.41 0.68 16 32 H 0.08 1.04 7.78 -51.93 -0.40 0.63 16 33 H 0.06 0.66 8.02 -51.93 -0.42 0.24 16 34 H 0.06 0.64 7.77 -51.93 -0.40 0.23 16 35 H 0.10 1.66 8.14 -51.93 -0.42 1.24 16 36 H 0.10 1.76 8.14 -51.93 -0.42 1.34 16 37 H 0.35 7.84 9.04 45.56 0.41 8.25 16 38 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 320.16 15.07 4.82 4.82 Total: -1.00 -30.34 320.16 -6.39 -36.72 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -4.84 Total: 6.61 kcal Atomic # 6 Polarization: -7.73 SS G_CDS: -1.98 Total: -9.71 kcal Atomic # 7 Polarization: -41.44 SS G_CDS: 0.87 Total: -40.57 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: -0.24 Total: -13.21 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.34 -6.39 -36.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702179914.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.178 kcal (2) G-P(sol) polarization free energy of solvation -30.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds