Wall clock time and date at job start Mon Mar 30 2020 04:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52990 * 115.56335 * 2 1 4 4 C 1.53008 * 117.49557 * 214.30865 * 2 1 3 5 5 C 1.53000 * 59.99900 * 252.51163 * 4 2 1 6 6 C 1.53006 * 117.49497 * 107.49228 * 5 4 2 7 7 C 1.50701 * 117.49743 * 252.48351 * 5 4 2 8 8 N 1.29942 * 126.28519 * 68.77723 * 7 5 4 9 9 O 1.21306 * 110.25142 * 179.97438 * 8 7 5 10 10 C 1.33643 * 109.81013 * 0.02562 * 9 8 7 11 11 C 1.50701 * 126.55146 * 179.97438 * 10 9 8 12 12 C 1.53003 * 109.46691 * 269.97462 * 11 10 9 13 13 H 1.09000 * 109.47249 * 54.99903 * 12 11 10 14 14 O 1.42901 * 109.47159 * 294.99923 * 12 11 10 15 15 C 1.50696 * 109.46731 * 174.99916 * 12 11 10 16 16 H 1.08006 * 119.99993 * 0.02562 * 15 12 11 17 17 C 1.37874 * 120.00017 * 179.97438 * 15 12 11 18 18 N 1.31514 * 120.00075 * 0.02562 * 17 15 12 19 19 Si 1.86801 * 120.00145 * 180.02562 * 17 15 12 20 20 H 1.48505 * 109.47237 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47281 * 120.00117 * 19 17 15 22 22 H 1.48503 * 109.47095 * 239.99939 * 19 17 15 23 23 N 1.31134 * 106.89521 * 359.76399 * 10 9 8 24 24 H 1.08999 * 109.46826 * 274.31390 * 1 2 3 25 25 H 1.09003 * 109.46704 * 34.30712 * 1 2 3 26 26 H 1.08995 * 109.47437 * 154.31472 * 1 2 3 27 27 H 1.09007 * 109.47305 * 205.68601 * 3 2 1 28 28 H 1.09002 * 109.47481 * 325.68754 * 3 2 1 29 29 H 1.09001 * 109.47294 * 85.69127 * 3 2 1 30 30 H 1.08998 * 117.49499 * 145.02287 * 4 2 1 31 31 H 1.08998 * 117.51868 * 359.97438 * 4 2 1 32 32 H 1.09002 * 109.46876 * 111.38735 * 6 5 4 33 33 H 1.08998 * 109.46939 * 231.38745 * 6 5 4 34 34 H 1.08998 * 109.47133 * 351.38988 * 6 5 4 35 35 H 1.08996 * 109.46624 * 29.97007 * 11 10 9 36 36 H 1.08998 * 109.46950 * 149.97768 * 11 10 9 37 37 H 0.96707 * 113.99642 * 300.00342 * 14 12 11 38 38 H 0.97006 * 120.00220 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3801 0.0000 4 6 2.2364 -1.1211 -0.7650 5 6 2.2364 -1.1210 0.7650 6 6 1.3587 -2.1563 1.4714 7 6 3.5295 -0.7818 1.4608 8 7 4.1108 0.3802 1.4794 9 8 5.1360 0.3264 2.1257 10 6 5.3115 -0.9128 2.5945 11 6 6.4597 -1.3977 3.4414 12 6 7.5811 -1.9098 2.5352 13 1 7.8619 -1.1293 1.8280 14 8 7.1271 -3.0602 1.8193 15 6 8.7761 -2.2802 3.3752 16 1 8.7393 -2.1625 4.4482 17 6 9.9161 -2.7702 2.7741 18 7 9.9607 -2.9140 1.4676 19 14 11.3972 -3.2300 3.8155 20 1 11.0937 -2.9767 5.2470 21 1 11.7099 -4.6689 3.6234 22 1 12.5652 -2.4104 3.4040 23 7 4.2911 -1.6249 2.1804 24 1 -0.3633 0.0773 1.0248 25 1 -0.3633 0.8489 -0.5793 26 1 -0.3634 -0.9261 -0.4454 27 1 3.1825 1.3083 -0.4455 28 1 1.5813 2.0742 -0.5793 29 1 2.2773 1.7413 1.0248 30 1 3.1715 -0.8753 -1.2683 31 1 1.6115 -1.8590 -1.2680 32 1 1.9921 -2.8889 1.9716 33 1 0.7293 -1.6569 2.2080 34 1 0.7296 -2.6604 0.7379 35 1 6.8330 -0.5758 4.0523 36 1 6.1181 -2.2055 4.0885 37 1 6.8600 -3.7964 2.3866 38 1 10.7626 -3.2592 1.0448 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702179914.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:06 Heat of formation + Delta-G solvation = 10.465464 kcal Electronic energy + Delta-G solvation = -20430.075355 eV Core-core repulsion = 17275.711060 eV Total energy + Delta-G solvation = -3154.364296 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -46.48928 -40.27321 -38.19268 -36.44067 -34.29296 -34.00911 -31.60284 -31.09119 -28.94513 -27.95897 -27.63984 -25.51181 -24.18440 -22.79755 -21.60049 -19.77149 -19.03011 -18.92363 -17.92012 -16.66721 -16.57357 -16.34637 -16.05084 -15.52250 -14.98347 -14.88966 -14.58715 -14.23724 -13.99008 -13.61190 -13.30261 -13.17054 -13.08193 -13.00501 -12.85215 -12.76559 -12.66119 -12.62739 -12.52054 -12.12591 -11.99387 -11.87265 -11.56439 -11.05078 -10.72939 -10.68009 -10.45745 -10.14025 -8.14209 -6.40756 0.17976 1.24130 1.44764 1.46727 1.58570 1.91729 2.40923 2.48436 2.66215 3.13897 3.15371 3.52587 3.68673 3.74978 4.07736 4.11041 4.30533 4.37661 4.46032 4.52755 4.65586 4.73412 4.75094 4.80981 4.84087 4.93482 4.94873 5.00663 5.02888 5.05496 5.12176 5.22618 5.31520 5.46725 5.55312 5.69111 5.99103 6.71015 7.21330 7.33088 7.51169 8.91284 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.042774 B = 0.004077 C = 0.004019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.442523 B = 6865.968933 C = 6965.503397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.093 4.093 3 C -0.109 4.109 4 C -0.148 4.148 5 C -0.068 4.068 6 C -0.099 4.099 7 C 0.200 3.800 8 N -0.401 5.401 9 O 0.047 5.953 10 C 0.207 3.793 11 C -0.046 4.046 12 C 0.236 3.764 13 H 0.021 0.979 14 O -0.578 6.578 15 C -0.580 4.580 16 H 0.078 0.922 17 C 0.024 3.976 18 N -0.903 5.903 19 Si 0.965 3.035 20 H -0.255 1.255 21 H -0.283 1.283 22 H -0.283 1.283 23 N -0.495 5.495 24 H 0.066 0.934 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.038 0.962 28 H 0.080 0.920 29 H 0.050 0.950 30 H 0.073 0.927 31 H 0.134 0.866 32 H 0.054 0.946 33 H 0.070 0.930 34 H 0.092 0.908 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.360 0.640 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.776 4.113 0.287 18.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.094 4.094 3 C -0.166 4.166 4 C -0.186 4.186 5 C -0.069 4.069 6 C -0.156 4.156 7 C -0.072 4.072 8 N -0.115 5.115 9 O -0.005 6.005 10 C -0.013 4.013 11 C -0.085 4.085 12 C 0.178 3.822 13 H 0.039 0.961 14 O -0.383 6.383 15 C -0.618 4.618 16 H 0.096 0.904 17 C -0.178 4.178 18 N -0.540 5.540 19 Si 0.790 3.210 20 H -0.179 1.179 21 H -0.209 1.209 22 H -0.209 1.209 23 N -0.228 5.228 24 H 0.085 0.915 25 H 0.096 0.904 26 H 0.096 0.904 27 H 0.057 0.943 28 H 0.099 0.901 29 H 0.069 0.931 30 H 0.091 0.909 31 H 0.152 0.848 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.111 0.889 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.206 0.794 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -18.086 4.809 -0.781 18.730 hybrid contribution 1.575 -0.525 0.751 1.822 sum -16.510 4.284 -0.030 17.057 Atomic orbital electron populations 1.21391 0.88500 1.03716 1.02883 1.21949 0.96798 0.90394 1.00264 1.21375 0.99222 0.94338 1.01673 1.23544 1.02389 1.02214 0.90485 1.19731 0.89733 1.03854 0.93627 1.21232 0.97753 0.96039 1.00609 1.25309 0.98913 0.85170 0.97830 1.74697 0.97943 1.23312 1.15526 1.85258 1.32660 1.33281 1.49295 1.29337 0.96658 0.80214 0.95056 1.21281 0.88068 1.03160 0.95965 1.19208 0.88598 0.84947 0.89489 0.96137 1.86549 1.86588 1.26375 1.38750 1.21995 0.99034 1.46087 0.94637 0.90400 1.25947 1.01643 0.94452 0.95780 1.70247 1.28850 1.44120 1.10821 0.85419 0.78554 0.77530 0.79506 1.17878 1.20899 1.20918 1.71821 1.04723 1.30876 1.15411 0.91515 0.90408 0.90417 0.94281 0.90099 0.93066 0.90868 0.84797 0.92680 0.91154 0.88916 0.86225 0.86287 0.79430 0.93029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.56 8.88 71.98 0.64 -0.93 16 2 C -0.09 -2.07 2.70 -52.18 -0.14 -2.21 16 3 C -0.11 -2.71 8.12 71.98 0.58 -2.12 16 4 C -0.15 -3.58 9.17 30.60 0.28 -3.30 16 5 C -0.07 -1.86 2.65 -52.92 -0.14 -2.00 16 6 C -0.10 -2.19 8.86 71.98 0.64 -1.55 16 7 C 0.20 7.27 7.31 138.46 1.01 8.28 16 8 N -0.40 -15.21 8.68 -60.31 -0.52 -15.73 16 9 O 0.05 1.86 11.31 74.83 0.85 2.70 16 10 C 0.21 8.14 7.54 88.38 0.67 8.81 16 11 C -0.05 -1.71 5.46 29.85 0.16 -1.55 16 12 C 0.24 11.58 2.81 29.85 0.08 11.66 16 13 H 0.02 1.17 8.14 -2.39 -0.02 1.15 16 14 O -0.58 -29.87 12.48 -148.98 -1.86 -31.73 16 15 C -0.58 -29.69 8.76 25.60 0.22 -29.46 16 16 H 0.08 3.67 7.74 -2.91 -0.02 3.65 16 17 C 0.02 1.30 5.40 84.65 0.46 1.76 16 18 N -0.90 -53.27 12.84 21.45 0.28 -53.00 16 19 Si 0.97 41.64 29.54 68.60 2.03 43.67 16 20 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 21 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 22 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 23 N -0.49 -19.51 11.20 -303.18 -3.39 -22.90 16 24 H 0.07 0.93 8.02 -2.39 -0.02 0.91 16 25 H 0.08 0.93 7.92 -2.39 -0.02 0.91 16 26 H 0.08 0.88 7.78 -2.39 -0.02 0.86 16 27 H 0.04 1.15 7.09 -2.38 -0.02 1.13 16 28 H 0.08 1.56 7.92 -2.39 -0.02 1.54 16 29 H 0.05 1.41 7.32 -2.39 -0.02 1.39 16 30 H 0.07 2.10 8.05 -2.39 -0.02 2.08 16 31 H 0.13 2.40 7.96 -2.39 -0.02 2.38 16 32 H 0.05 1.44 7.78 -2.39 -0.02 1.43 16 33 H 0.07 1.38 8.02 -2.39 -0.02 1.36 16 34 H 0.09 1.50 7.77 -2.39 -0.02 1.48 16 35 H 0.12 3.93 8.14 -2.39 -0.02 3.91 16 36 H 0.12 4.02 8.14 -2.39 -0.02 4.00 16 37 H 0.36 16.34 9.04 -74.05 -0.67 15.67 16 38 H 0.26 14.59 8.31 -92.70 -0.77 13.82 16 Total: -1.00 -66.61 320.16 2.23 -64.38 By element: Atomic # 1 Polarization: 24.83 SS G_CDS: 0.40 Total: 25.22 kcal Atomic # 6 Polarization: -17.08 SS G_CDS: 4.47 Total: -12.61 kcal Atomic # 7 Polarization: -87.99 SS G_CDS: -3.64 Total: -91.63 kcal Atomic # 8 Polarization: -28.01 SS G_CDS: -1.01 Total: -29.02 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.67 kcal Total: -66.61 2.23 -64.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702179914.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.847 kcal (2) G-P(sol) polarization free energy of solvation -66.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds